@nfdi4plants/arctrl 1.0.0-alpha9 → 1.0.0-beta.2

package/ISA/ISA/ArcTypes/CompositeCell.js

@@ -1,9 +1,9 @@
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../JsonTypes/OntologyAnnotation.js";
 import { AnnotationValue } from "../JsonTypes/AnnotationValue.js";
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class CompositeCell extends Union {
     constructor(tag, fields) {

package/ISA/ISA/ArcTypes/CompositeColumn.js

@@ -1,9 +1,9 @@
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty, singleton, collect, delay, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty, singleton, collect, delay, toArray } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { CompositeHeader_$reflection } from "./CompositeHeader.js";
 import { CompositeCell_$reflection } from "./CompositeCell.js";
-import { record_type, array_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, array_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class CompositeColumn extends Record {
     constructor(Header, Cells) {

package/ISA/ISA/ArcTypes/CompositeHeader.js

@@ -1,9 +1,9 @@
-import { map } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { union_type, string_type, getUnionCases, name } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { map } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { union_type, string_type, getUnionCases, name } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { ActivePatterns_$007CTermColumn$007C_$007C, Pattern_OutputPattern, Pattern_InputPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseIOTypeHeader } from "../Regex.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../JsonTypes/OntologyAnnotation.js";
 import { ProtocolParameter_create_Z6C54B221 } from "../JsonTypes/ProtocolParameter.js";
 import { Factor } from "../JsonTypes/Factor.js";

package/ISA/ISA/ArcTypes/CompositeRow.js

@@ -1,4 +1,4 @@
-import { fold } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { fold } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
 import { Protocol_create_Z7DFD6E67, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType } from "../JsonTypes/Protocol.js";
 import { ProtocolParameter_create_Z6C54B221 } from "../JsonTypes/ProtocolParameter.js";
 import { Component_create_61502994 } from "../JsonTypes/Component.js";

package/ISA/ISA/Builder/Types.js

@@ -1,15 +1,15 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { list_type, union_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { list_type, union_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation_$reflection } from "../JsonTypes/OntologyAnnotation.js";
 import { Protocol_get_empty, Protocol } from "../JsonTypes/Protocol.js";
 import { ProcessParameterValue_$reflection } from "../JsonTypes/ProcessParameterValue.js";
 import { MaterialAttributeValue_$reflection } from "../JsonTypes/MaterialAttributeValue.js";
 import { FactorValue_$reflection } from "../JsonTypes/FactorValue.js";
-import { map as map_1, exists, fold, singleton, empty, append } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { map, value as value_4, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map as map_1, exists, fold, singleton, empty, append } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { map, value as value_4, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Process_get_empty, Process } from "../JsonTypes/Process.js";
 import { Assay_get_empty, Assay } from "../JsonTypes/Assay.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { Study } from "../JsonTypes/Study.js";
 
 export class ProtocolTransformation extends Union {

package/ISA/ISA/Fable.js

@@ -1,8 +1,8 @@
-import { toString } from "../../fable_modules/fable-library.4.1.4/Types.js";
-import { append } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { append as append_1 } from "../../fable_modules/fable-library.4.1.4/Array.js";
-import { Array_distinct, List_distinct } from "../../fable_modules/fable-library.4.1.4/Seq2.js";
-import { structuralHash, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { toString } from "../../fable_modules/fable-library.4.4.1/Types.js";
+import { append } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { append as append_1 } from "../../fable_modules/fable-library.4.4.1/Array.js";
+import { Array_distinct, List_distinct } from "../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { structuralHash, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
 
 export function isMap_generic(l1) {
     let copyOfStruct;

package/ISA/ISA/Helper.js

@@ -1,13 +1,13 @@
-import { some, value as value_1 } from "../../fable_modules/fable-library.4.1.4/Option.js";
-import { isIterable, defaultOf, structuralHash, equals, numberHash, identityHash } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { exactlyOne, partition, fold } from "../../fable_modules/fable-library.4.1.4/Array.js";
-import { empty, singleton, append, head, tail, isEmpty } from "../../fable_modules/fable-library.4.1.4/List.js";
-import { Dictionary } from "../../fable_modules/fable-library.4.1.4/MutableMap.js";
-import { isEmpty as isEmpty_1, iterate } from "../../fable_modules/fable-library.4.1.4/Seq.js";
-import { tryGetValue, addToDict } from "../../fable_modules/fable-library.4.1.4/MapUtil.js";
-import { Union, toString, FSharpRef } from "../../fable_modules/fable-library.4.1.4/Types.js";
+import { some, value as value_1 } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { isIterable, defaultOf, structuralHash, equals, numberHash, identityHash } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { exactlyOne, partition, fold } from "../../fable_modules/fable-library.4.4.1/Array.js";
+import { empty, singleton, append, head, tail, isEmpty } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { Dictionary } from "../../fable_modules/fable-library.4.4.1/MutableMap.js";
+import { isEmpty as isEmpty_1, iterate } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { tryGetValue, addToDict } from "../../fable_modules/fable-library.4.4.1/MapUtil.js";
+import { Union, toString, FSharpRef } from "../../fable_modules/fable-library.4.4.1/Types.js";
 import { append_generic, distinct_generic, isList_generic, isMap_generic } from "./Fable.js";
-import { union_type, makeUnion, option_type, makeGenericType, getUnionCases, name, obj_type } from "../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { union_type, makeUnion, option_type, makeGenericType, getUnionCases, name, obj_type } from "../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export function HashCodes_boxHashOption(a) {
     let copyOfStruct, copyOfStruct_1;

package/ISA/ISA/Identifier.js

@@ -1,5 +1,5 @@
-import { match, isMatch } from "../../fable_modules/fable-library.4.1.4/RegExp.js";
-import { newGuid } from "../../fable_modules/fable-library.4.1.4/Guid.js";
+import { match, isMatch } from "../../fable_modules/fable-library.4.4.1/RegExp.js";
+import { newGuid } from "../../fable_modules/fable-library.4.4.1/Guid.js";
 import { combineMany } from "../../FileSystem/Path.js";
 
 export function checkValidCharacters(identifier) {

package/ISA/ISA/JsonTypes/AnnotationValue.js

@@ -1,8 +1,8 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type, int32_type, float64_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { parse } from "../../../fable_modules/fable-library.4.1.4/Double.js";
-import { parse as parse_1 } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type, int32_type, float64_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { parse } from "../../../fable_modules/fable-library.4.4.1/Double.js";
+import { parse as parse_1 } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 
 export class AnnotationValue extends Union {
     constructor(tag, fields) {

package/ISA/ISA/JsonTypes/Assay.js

@@ -1,22 +1,22 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
 import { Data_$reflection } from "./Data.js";
 import { AssayMaterials_get_empty, AssayMaterials_make, AssayMaterials_$reflection } from "./AssayMaterials.js";
 import { MaterialAttribute_$reflection } from "./MaterialAttribute.js";
 import { Process_$reflection } from "./Process.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { empty, filter, map, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Dict_tryFind, Dict_ofSeqWithMerge, Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
 import { Option_fromValueWithDefault, Update_UpdateOptions, Option_mapDefault } from "../Helper.js";
 import { updateProtocols, getProtocols, getFactors, getOutputsWithFactorBy, getOutputsWithCharacteristicBy, getInputsWithCharacteristicBy, getParameters, getOutputsWithParameterBy, getInputsWithParameterBy, getMaterials, getSamples, getSources, getCharacteristics, getUnits, getData } from "./ProcessSequence.js";
-import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
+import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
 import { Sample_$reflection } from "./Sample.js";
 import { Material_$reflection } from "./Material.js";
-import { toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Assay extends Record {
     constructor(ID, FileName, MeasurementType, TechnologyType, TechnologyPlatform, DataFiles, Materials, CharacteristicCategories, UnitCategories, ProcessSequence, Comments) {
@@ -148,10 +148,10 @@ export function Assay_getData_722A269D(assay) {
     const list1 = defaultArg(assay.DataFiles, empty());
     const list2 = processSequenceData;
     try {
-        const map1 = Dict_ofSeqWithMerge((arg, arg_1) => {
+        const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
             const this$ = updateOptions;
-            const recordType_1 = arg;
-            const recordType_2 = arg_1;
+            const recordType_1 = recordType_;
+            const recordType_2 = recordType__1;
             switch (this$.tag) {
                 case 2:
                     return makeRecord(Data_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -163,10 +163,10 @@ export function Assay_getData_722A269D(assay) {
                     return recordType_2;
             }
         }, map((v) => [mapping(v), v], list1));
-        const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+        const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
             const this$_1 = updateOptions;
-            const recordType_1_1 = arg_2;
-            const recordType_2_1 = arg_3;
+            const recordType_1_1 = recordType__2;
+            const recordType_2_1 = recordType__3;
             switch (this$_1.tag) {
                 case 2:
                     return makeRecord(Data_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -373,10 +373,10 @@ export function Assay_getMaterials_722A269D(assay) {
         const list1 = defaultArg(mat.Samples, empty());
         const list2 = processSequenceSamples;
         try {
-            const map1 = Dict_ofSeqWithMerge((arg, arg_1) => {
+            const map1 = Dict_ofSeqWithMerge((recordType_, recordType__1) => {
                 const this$ = updateOptions;
-                const recordType_1 = arg;
-                const recordType_2 = arg_1;
+                const recordType_1 = recordType_;
+                const recordType_2 = recordType__1;
                 switch (this$.tag) {
                     case 2:
                         return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1), getRecordFields(recordType_2)));
@@ -388,10 +388,10 @@ export function Assay_getMaterials_722A269D(assay) {
                         return recordType_2;
                 }
             }, map((v) => [mapping(v), v], list1));
-            const map2 = Dict_ofSeqWithMerge((arg_2, arg_3) => {
+            const map2 = Dict_ofSeqWithMerge((recordType__2, recordType__3) => {
                 const this$_1 = updateOptions;
-                const recordType_1_1 = arg_2;
-                const recordType_2_1 = arg_3;
+                const recordType_1_1 = recordType__2;
+                const recordType_2_1 = recordType__3;
                 switch (this$_1.tag) {
                     case 2:
                         return makeRecord(Sample_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_1), getRecordFields(recordType_2_1)));
@@ -451,10 +451,10 @@ ${err.message}`);
         const list1_1 = defaultArg(mat.OtherMaterials, empty());
         const list2_1 = processSequenceMaterials;
         try {
-            const map1_1 = Dict_ofSeqWithMerge((arg_6, arg_1_1) => {
+            const map1_1 = Dict_ofSeqWithMerge((recordType__6, recordType__1_1) => {
                 const this$_3 = updateOptions_1;
-                const recordType_1_3 = arg_6;
-                const recordType_2_3 = arg_1_1;
+                const recordType_1_3 = recordType__6;
+                const recordType_2_3 = recordType__1_1;
                 switch (this$_3.tag) {
                     case 2:
                         return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_3), getRecordFields(recordType_2_3)));
@@ -466,10 +466,10 @@ ${err.message}`);
                         return recordType_2_3;
                 }
             }, map((v_2) => [mapping_5(v_2), v_2], list1_1));
-            const map2_1 = Dict_ofSeqWithMerge((arg_2_1, arg_3_1) => {
+            const map2_1 = Dict_ofSeqWithMerge((recordType__2_1, recordType__3_1) => {
                 const this$_4 = updateOptions_1;
-                const recordType_1_4 = arg_2_1;
-                const recordType_2_4 = arg_3_1;
+                const recordType_1_4 = recordType__2_1;
+                const recordType_2_4 = recordType__3_1;
                 switch (this$_4.tag) {
                     case 2:
                         return makeRecord(Material_$reflection(), map2_2(Update_updateAppend, getRecordFields(recordType_1_4), getRecordFields(recordType_2_4)));

package/ISA/ISA/JsonTypes/AssayMaterials.js

@@ -1,9 +1,9 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Sample_$reflection } from "./Sample.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 
 export class AssayMaterials extends Record {
     constructor(Samples, OtherMaterials) {

package/ISA/ISA/JsonTypes/ColumnIndex.js

@@ -1,10 +1,10 @@
-import { tryParse } from "../../../fable_modules/fable-library.4.1.4/Int32.js";
-import { FSharpRef } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { tryParse } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
+import { FSharpRef } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 import { Comment$ } from "./Comment.js";
-import { value, bind } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { value as value_1, bind } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { tryItem } from "./CommentList.js";
-import { append } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { append } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { OntologyAnnotation } from "./OntologyAnnotation.js";
 import { Factor } from "./Factor.js";
 import { MaterialAttribute_fromString_Z2304A83C } from "./MaterialAttribute.js";
@@ -28,8 +28,8 @@ function tryInt(str) {
 export const orderName = "ColumnIndex";
 
 export function createOrderComment(index) {
-    const arg_1 = int32ToString(index);
-    return Comment$.fromString(orderName, arg_1);
+    const value = int32ToString(index);
+    return Comment$.fromString(orderName, value);
 }
 
 export function tryGetIndex(comments) {
@@ -81,11 +81,11 @@ export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_fromStringWith
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_Z4C0FE73C(f) {
-    return value(tryGetOntologyAnnotationIndex(f));
+    return value_1(tryGetOntologyAnnotationIndex(f));
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$) {
-    return value(tryGetOntologyAnnotationIndex(this$));
+    return value_1(tryGetOntologyAnnotationIndex(this$));
 }
 
 export function ARCtrl_ISA_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_Z4C0FE73C(f) {
@@ -112,11 +112,11 @@ export function ARCtrl_ISA_Factor__Factor_fromStringWithColumnIndex_Static(name,
 }
 
 export function ARCtrl_ISA_Factor__Factor_getColumnIndex_Static_Z55333BD7(f) {
-    return value(tryGetFactorIndex(f));
+    return value_1(tryGetFactorIndex(f));
 }
 
 export function ARCtrl_ISA_Factor__Factor_GetColumnIndex(this$) {
-    return value(tryGetFactorIndex(this$));
+    return value_1(tryGetFactorIndex(this$));
 }
 
 export function ARCtrl_ISA_Factor__Factor_tryGetColumnIndex_Static_Z55333BD7(f) {
@@ -128,11 +128,11 @@ export function ARCtrl_ISA_Factor__Factor_TryGetColumnIndex(this$) {
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_getColumnIndex_Static_Z2623397E(f) {
-    return value(tryGetFactorColumnIndex(f));
+    return value_1(tryGetFactorColumnIndex(f));
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_GetColumnIndex(this$) {
-    return value(tryGetFactorColumnIndex(this$));
+    return value_1(tryGetFactorColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_FactorValue__FactorValue_tryGetColumnIndex_Static_Z2623397E(f) {
@@ -151,11 +151,11 @@ export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_fromStringWithCo
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z5F39696D(m) {
-    return value(tryGetCharacteristicIndex(m));
+    return value_1(tryGetCharacteristicIndex(m));
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicIndex(this$));
+    return value_1(tryGetCharacteristicIndex(this$));
 }
 
 export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z5F39696D(m) {
@@ -167,11 +167,11 @@ export function ARCtrl_ISA_MaterialAttribute__MaterialAttribute_TryGetColumnInde
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_43A5B238(m) {
-    return value(tryGetCharacteristicColumnIndex(m));
+    return value_1(tryGetCharacteristicColumnIndex(m));
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicColumnIndex(this$));
+    return value_1(tryGetCharacteristicColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_43A5B238(m) {
@@ -190,11 +190,11 @@ export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_fromStringWithCo
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z3A4310A5(p) {
-    return value(tryGetParameterIndex(p));
+    return value_1(tryGetParameterIndex(p));
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$) {
-    return value(tryGetParameterIndex(this$));
+    return value_1(tryGetParameterIndex(this$));
 }
 
 export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z3A4310A5(p) {
@@ -206,11 +206,11 @@ export function ARCtrl_ISA_ProtocolParameter__ProtocolParameter_TryGetColumnInde
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_5FD7232D(p) {
-    return value(tryGetParameterColumnIndex(p));
+    return value_1(tryGetParameterColumnIndex(p));
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$) {
-    return value(tryGetParameterColumnIndex(this$));
+    return value_1(tryGetParameterColumnIndex(this$));
 }
 
 export function ARCtrl_ISA_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_5FD7232D(p) {
@@ -229,11 +229,11 @@ export function ARCtrl_ISA_Component__Component_fromStringWithColumnIndex_Static
 }
 
 export function ARCtrl_ISA_Component__Component_getColumnIndex_Static_Z609B8895(f) {
-    return value(tryGetComponentIndex(f));
+    return value_1(tryGetComponentIndex(f));
 }
 
 export function ARCtrl_ISA_Component__Component_GetColumnIndex(this$) {
-    return value(tryGetComponentIndex(this$));
+    return value_1(tryGetComponentIndex(this$));
 }
 
 export function ARCtrl_ISA_Component__Component_tryGetColumnIndex_Static_Z609B8895(f) {

package/ISA/ISA/JsonTypes/Comment.js

@@ -1,6 +1,6 @@
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { int32_type, record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { int32_type, record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class Comment$ extends Record {
     constructor(ID, Name, Value) {

package/ISA/ISA/JsonTypes/CommentList.js

@@ -1,7 +1,7 @@
-import { map, append, choose, tryPick } from "../../../fable_modules/fable-library.4.1.4/Array.js";
-import { value } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { ofArray } from "../../../fable_modules/fable-library.4.1.4/Map.js";
-import { equals, comparePrimitives } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { map, append, choose, tryPick } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { value } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { ofArray } from "../../../fable_modules/fable-library.4.4.1/Map.js";
+import { equals, comparePrimitives } from "../../../fable_modules/fable-library.4.4.1/Util.js";
 
 /**
  * If a comment with the given key exists in the [], return its value, else return None

package/ISA/ISA/JsonTypes/Component.js

@@ -1,12 +1,12 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Value as Value_1, Value_fromString_Z721C83C5, Value__get_Text, Value_$reflection } from "./Value.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { create, match } from "../../../fable_modules/fable-library.4.1.4/RegExp.js";
+import { create, match } from "../../../fable_modules/fable-library.4.4.1/RegExp.js";
 import { AnnotationValue } from "./AnnotationValue.js";
-import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Component extends Record {
     constructor(ComponentName, ComponentValue, ComponentUnit, ComponentType) {
@@ -72,14 +72,14 @@ export function Component_decomposeName_Z721C83C5(name) {
     const unitr = match(create("(?<value>[\\d\\.]+) (?<unit>.+) \\((?<ontology>[^(]*:[^)]*)\\)"), name);
     if (unitr != null) {
         let oa;
-        const arg = (unitr.groups && unitr.groups.ontology) || "";
-        oa = OntologyAnnotation.fromTermAnnotation(arg);
+        const termAnnotation = (unitr.groups && unitr.groups.ontology) || "";
+        oa = OntologyAnnotation.fromTermAnnotation(termAnnotation);
         return [Value_fromString_Z721C83C5((unitr.groups && unitr.groups.value) || ""), new OntologyAnnotation(oa.ID, new AnnotationValue(0, [(unitr.groups && unitr.groups.unit) || ""]), oa.TermSourceREF, oa.TermAccessionNumber, oa.Comments)];
     }
     else if (r != null) {
         let oa_1;
-        const arg_2 = (r.groups && r.groups.ontology) || "";
-        oa_1 = OntologyAnnotation.fromTermAnnotation(arg_2);
+        const termAnnotation_1 = (r.groups && r.groups.ontology) || "";
+        oa_1 = OntologyAnnotation.fromTermAnnotation(termAnnotation_1);
         return [new Value_1(0, [new OntologyAnnotation(oa_1.ID, new AnnotationValue(0, [Value__get_Text(Value_fromString_Z721C83C5((r.groups && r.groups.value) || ""))]), oa_1.TermSourceREF, oa_1.TermAccessionNumber, oa_1.Comments)]), void 0];
     }
     else {
@@ -111,14 +111,14 @@ export function Component_fromOptions(value, unit, header) {
  * Get ISATab string entries from an ISAJson Component object
  */
 export function Component_toString_Z609B8895(c) {
-    let oa;
+    let oa_1;
     const value = {
         TermAccessionNumber: "",
         TermName: "",
         TermSourceREF: "",
     };
-    oa = defaultArg(map((arg) => OntologyAnnotation.toString(arg), c.ComponentType), value);
-    return [defaultArg(c.ComponentName, ""), oa];
+    oa_1 = defaultArg(map((oa) => OntologyAnnotation.toString(oa), c.ComponentType), value);
+    return [defaultArg(c.ComponentName, ""), oa_1];
 }
 
 export function Component__get_NameText(this$) {

package/ISA/ISA/JsonTypes/Data.js

@@ -1,9 +1,9 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 import { DataFile_$reflection, DataFile__get_AsString } from "./DataFile.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 
 export class Data extends Record {
     constructor(ID, Name, DataType, Comments) {

package/ISA/ISA/JsonTypes/DataFile.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { union_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { union_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 
 export class DataFile extends Union {
     constructor(tag, fields) {

package/ISA/ISA/JsonTypes/Factor.js

@@ -1,12 +1,12 @@
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "./OntologyAnnotation.js";
-import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { map, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.4.1/Option.js";
 import { Option_fromValueWithDefault } from "../Helper.js";
-import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.1.4/List.js";
-import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { filter, map as map_1, singleton, append, exists, tryFind } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { record_type, array_type, option_type, string_type, getRecordFields, makeRecord } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { map as map_2, map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
 import { Comment$_$reflection } from "./Comment.js";
 
 export class Factor extends Record {
@@ -28,9 +28,9 @@ export class Factor extends Record {
     }
     static fromString(name, term, source, accession, comments) {
         const oa = OntologyAnnotation.fromString(term, source, accession, unwrap(comments));
-        const arg_1 = Option_fromValueWithDefault("", name);
-        const arg_2 = Option_fromValueWithDefault(OntologyAnnotation.empty, oa);
-        return Factor.make(void 0, arg_1, arg_2, void 0);
+        const name_1 = Option_fromValueWithDefault("", name);
+        const factorType = Option_fromValueWithDefault(OntologyAnnotation.empty, oa);
+        return Factor.make(void 0, name_1, factorType, void 0);
     }
     static toString(factor) {
         const value = {
@@ -38,7 +38,7 @@ export class Factor extends Record {
             TermName: "",
             TermSourceREF: "",
         };
-        return defaultArg(map((arg) => OntologyAnnotation.toString(arg), factor.FactorType), value);
+        return defaultArg(map((oa) => OntologyAnnotation.toString(oa), factor.FactorType), value);
     }
     get NameText() {
         const this$ = this;
@@ -109,8 +109,8 @@ export class Factor extends Record {
     }
     Copy() {
         const this$ = this;
-        const arg_3 = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
-        return Factor.make(this$.ID, this$.Name, this$.FactorType, arg_3);
+        const comments = map((array) => map_2((c) => c.Copy(), array), this$.Comments);
+        return Factor.make(this$.ID, this$.Name, this$.FactorType, comments);
     }
     Print() {
         const this$ = this;

package/ISA/ISA/JsonTypes/FactorValue.js

@@ -1,11 +1,11 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { defaultArg, map } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { defaultArg, map } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { record_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { Factor, Factor_$reflection } from "./Factor.js";
 import { Value_$reflection } from "./Value.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class FactorValue extends Record {
     constructor(ID, Category, Value, Unit) {

package/ISA/ISA/JsonTypes/Investigation.js

@@ -1,16 +1,16 @@
-import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
 import { OntologySourceReference_$reflection } from "./OntologySourceReference.js";
 import { Publication_$reflection } from "./Publication.js";
 import { Person_$reflection } from "./Person.js";
 import { Study_update_7312BC8B, Study_$reflection } from "./Study.js";
 import { Remark_$reflection, Comment$_$reflection } from "./Comment.js";
-import { map, defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { map as map_1, empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { map as map_1, empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
 import { Option_mapDefault } from "../Helper.js";
-import { map2 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { map2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
 import { Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
 
 export class Investigation extends Record {
     constructor(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, OntologySourceReferences, Publications, Contacts, Studies, Comments, Remarks) {