@nahisaho/satori 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. package/LICENCE +0 -0
  2. package/README.md +191 -0
  3. package/bin/satori.js +95 -0
  4. package/package.json +29 -0
  5. package/src/.github/skills/scientific-academic-writing/SKILL.md +361 -0
  6. package/src/.github/skills/scientific-academic-writing/assets/acs_article.md +199 -0
  7. package/src/.github/skills/scientific-academic-writing/assets/elsevier_article.md +244 -0
  8. package/src/.github/skills/scientific-academic-writing/assets/ieee_transactions.md +212 -0
  9. package/src/.github/skills/scientific-academic-writing/assets/imrad_standard.md +181 -0
  10. package/src/.github/skills/scientific-academic-writing/assets/nature_article.md +179 -0
  11. package/src/.github/skills/scientific-academic-writing/assets/qiita_technical_article.md +385 -0
  12. package/src/.github/skills/scientific-academic-writing/assets/science_research_article.md +169 -0
  13. package/src/.github/skills/scientific-bioinformatics/SKILL.md +220 -0
  14. package/src/.github/skills/scientific-biosignal-processing/SKILL.md +357 -0
  15. package/src/.github/skills/scientific-causal-inference/SKILL.md +347 -0
  16. package/src/.github/skills/scientific-cheminformatics/SKILL.md +196 -0
  17. package/src/.github/skills/scientific-data-preprocessing/SKILL.md +413 -0
  18. package/src/.github/skills/scientific-data-simulation/SKILL.md +244 -0
  19. package/src/.github/skills/scientific-doe/SKILL.md +360 -0
  20. package/src/.github/skills/scientific-eda-correlation/SKILL.md +141 -0
  21. package/src/.github/skills/scientific-feature-importance/SKILL.md +208 -0
  22. package/src/.github/skills/scientific-image-analysis/SKILL.md +310 -0
  23. package/src/.github/skills/scientific-materials-characterization/SKILL.md +368 -0
  24. package/src/.github/skills/scientific-meta-analysis/SKILL.md +352 -0
  25. package/src/.github/skills/scientific-metabolomics/SKILL.md +326 -0
  26. package/src/.github/skills/scientific-ml-classification/SKILL.md +265 -0
  27. package/src/.github/skills/scientific-ml-regression/SKILL.md +215 -0
  28. package/src/.github/skills/scientific-multi-omics/SKILL.md +303 -0
  29. package/src/.github/skills/scientific-network-analysis/SKILL.md +257 -0
  30. package/src/.github/skills/scientific-pca-tsne/SKILL.md +235 -0
  31. package/src/.github/skills/scientific-pipeline-scaffold/SKILL.md +331 -0
  32. package/src/.github/skills/scientific-process-optimization/SKILL.md +215 -0
  33. package/src/.github/skills/scientific-publication-figures/SKILL.md +208 -0
  34. package/src/.github/skills/scientific-sequence-analysis/SKILL.md +389 -0
  35. package/src/.github/skills/scientific-spectral-signal/SKILL.md +227 -0
  36. package/src/.github/skills/scientific-statistical-testing/SKILL.md +240 -0
  37. package/src/.github/skills/scientific-survival-clinical/SKILL.md +239 -0
  38. package/src/.github/skills/scientific-time-series/SKILL.md +291 -0
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+ # IMRaD 標準テンプレート
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+
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+ > 対象: PLoS ONE, Scientific Reports, 一般的な学術論文
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+ > 構成: Introduction → Methods → Results → Discussion
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+ > 語数目安: 3,000–6,000 words (ジャーナルにより異なる)
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+
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+ ---
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+
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+ # [論文タイトル — 簡潔・具体的・結果を反映]
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+
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+ Author A¹*, Author B², Author C¹
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+
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+ ¹ Department of XXX, University of YYY, City, Country
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+ ² Department of XXX, University of ZZZ, City, Country
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+ \* Corresponding author: email@example.com
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+
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+ ---
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+
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+ ## Abstract
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+
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+ <!-- 150–300 words, 構造化推奨 -->
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+
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+ **Background**: [研究分野の背景と課題を 1-2 文で記述]
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+
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+ **Objective**: [本研究の目的を 1 文で記述]
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+
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+ **Methods**: [使用した材料・手法・解析方法を 2-3 文で記述]
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+
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+ **Results**: [主要な定量的結果を 2-3 文で記述。p 値・効果量を含む]
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+
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+ **Conclusions**: [結論と意義を 1-2 文で記述]
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+
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+ **Keywords**: keyword1, keyword2, keyword3, keyword4, keyword5
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+
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+ ---
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+
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+ ## 1. Introduction
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+
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+ <!-- 800–1,500 words -->
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+
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+ ### 研究分野の重要性
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+ [この分野がなぜ重要か、社会的・科学的意義を述べる]
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+
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+ ### 先行研究の概観
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+ [主要な先行研究を時系列または主題別にレビュー]
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+
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+ ### 研究ギャップの特定
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+ [先行研究で解決されていない課題を明示する]
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+
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+ ### 本研究の目的
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+ [目的を明確に述べ、仮説があれば提示する]
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+
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+ ---
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+
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+ ## 2. Methods
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+
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+ ### 2.1 Materials / Datasets
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+
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+ [使用した材料・試薬・データセットの詳細]
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+
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+ ### 2.2 Experimental Procedure
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+
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+ [実験手順を再現可能な詳細度で記述]
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+
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+ ### 2.3 Characterization / Measurements
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+
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+ [分析手法・装置・測定条件の詳細]
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+
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+ ### 2.4 Statistical Analysis
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+
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+ [統計手法・ソフトウェア・有意水準]
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+
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+ ---
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+
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+ ## 3. Results
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+
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+ ### 3.1 [Result 1 のタイトル]
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+
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+ [客観的な結果の記述。図表を参照しながら定量的に述べる]
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+ (Figure 1, Table 1)
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+
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+ ### 3.2 [Result 2 のタイトル]
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+
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+ [客観的な結果の記述]
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+ (Figure 2, Table 2)
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+
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+ ### 3.3 [Result 3 のタイトル]
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+
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+ [客観的な結果の記述]
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+ (Figure 3)
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+
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+ ---
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+
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+ ## 4. Discussion
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+
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+ ### 主要な発見の要約
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+ [Results の解釈を述べる(再述ではない)]
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+
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+ ### 先行研究との比較
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+ [本研究の結果を先行研究と対比する]
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+
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+ ### メカニズムの考察
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+ [観察された結果の背景にあるメカニズムを議論する]
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+
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+ ### 研究の限界
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+ [本研究の限界を正直に述べる]
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+
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+ ### 将来の展望
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+ [今後の研究方向を提案する]
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+
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+ ---
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+
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+ ## 5. Conclusions
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+
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+ [主要な結論を 1 段落で簡潔にまとめる]
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+
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+ ---
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+
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+ ## Acknowledgments
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+
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+ [資金援助、技術支援、議論への貢献者への謝辞]
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+
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+ ---
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+
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+ ## Funding
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+
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+ This work was supported by [funding agency] (Grant No. XXXXX).
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+
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+ ---
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+
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+ ## Author Contributions
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+
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+ **Author A**: Conceptualization, Methodology, Writing – original draft.
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+ **Author B**: Investigation, Data curation.
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+ **Author C**: Supervision, Writing – review & editing.
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+
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+ ---
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+
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+ ## Conflicts of Interest
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+
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+ The authors declare no competing interests.
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+
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+ ---
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+
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+ ## Data Availability Statement
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+
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+ The data that support the findings of this study are available from the corresponding author upon reasonable request.
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+ <!-- or: available at [repository URL] (DOI: XXXXX) -->
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+
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+ ---
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+
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+ ## References
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+
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+ <!-- 番号順 or 著者名-年方式(ジャーナルに従う) -->
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+
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+ 1. [Reference 1]
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+ 2. [Reference 2]
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+
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+ ---
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+
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+ ## Figure Captions
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+
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+ **Figure 1.** [一文目: 図全体の説明(太字推奨)] [パネルごとの説明: (a) ..., (b) ..., (c) ...]
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+
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+ **Figure 2.** [キャプション]
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+
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+ ---
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+
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+ ## Tables
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+
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+ **Table 1.** [表タイトル]
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+
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+ | Column A | Column B | Column C |
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+ |---|---|---|
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+ | Data | Data | Data |
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+
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+ ---
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+
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+ ## Supplementary Information
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+
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+ See Supplementary Information for additional figures, tables, and methods.
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+ # Nature Article テンプレート
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+
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+ > 対象: Nature, Nature Communications, Nature Materials, Nature Chemistry 等
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+ > 構成: Abstract → Introduction → Results → Discussion → Methods
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+ > 特徴: Methods は末尾配置。Extended Data(最大 10 図表)を利用可。
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+ > 語数目安: Article 3,000–5,000 words / Letter ≤ 1,500 words (本文のみ)
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+
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+ ---
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+
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+ # [タイトル — 発見を端的に伝える。動詞を含む積極的な表現推奨]
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+
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+ Author A¹*, Author B¹,², Author C³
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+
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+ ¹ Affiliation 1
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+ ² Affiliation 2
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+ ³ Affiliation 3
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+ \* e-mail: corresponding@example.com
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+
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+ ---
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+
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+ ## Abstract
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+
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+ <!-- Nature: 最大 150 words。段落分けなし(非構造化)。 -->
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+
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+ [一文目: 研究の背景・動機。「Here we ...」で本研究の内容に入る。
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+ 主要な結果を定量的に示し、最後に意義・インパクトを述べる。]
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+
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+ ---
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+
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+ ## Introduction
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+
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+ <!-- 簡潔に。背景→ギャップ→目的。通常 3–5 段落。参照は上付き番号¹。 -->
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+
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+ [研究分野の背景]¹,².
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+
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+ [先行研究のレビューとギャップの特定]³⁻⁵.
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+
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+ Here we report [本研究のアプローチと主要な発見を 1-2 文で予告].
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+
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+ ---
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+
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+ ## Results
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+
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+ <!-- 小見出し付き。図表は Fig. 1a, Fig. 2b の形式で参照。 -->
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+
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+ ### [Result 1 のタイトル — 発見内容を反映]
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+
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+ [結果の記述。Fig. 1a を参照。定量値 ± 誤差を明記。]
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+
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+ ### [Result 2 のタイトル]
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+
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+ [結果の記述。Fig. 1b,c を参照。]
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+
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+ ### [Result 3 のタイトル]
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+
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+ [結果の記述。Fig. 2 を参照。統計情報: mean ± s.e.m., n = XX, P = X.XX。]
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+
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+ ---
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+
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+ ## Discussion
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+
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+ <!-- 結果の解釈、先行研究との比較、限界、展望。通常 3–5 段落。 -->
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+
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+ [主要な発見の解釈]
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+
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+ [先行研究との比較・位置づけ]
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+
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+ [メカニズムの考察]
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+
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+ [限界と今後の展望]
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+
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+ [結論: 1-2 文で締めくくる]
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+
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+ ---
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+
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+ ## Methods
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+
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+ <!-- 本文末尾に配置。再現に必要な詳細を記述。小見出し付き。 -->
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+
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+ ### Sample preparation / Data collection
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+
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+ [材料・データの詳細]
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+
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+ ### Experimental setup
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+
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+ [装置・条件の詳細]
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+
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+ ### Data analysis
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+
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+ [解析手法・ソフトウェアの詳細]
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+
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+ ### Statistical analysis
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+
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+ [統計手法。サンプルサイズの決定根拠も含む。]
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+ All statistical tests were two-sided unless otherwise stated.
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+ No statistical methods were used to predetermine sample size.
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+
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+ ---
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+
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+ ## Data availability
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+
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+ The data that support the findings of this study are available at [repository] (DOI: XXXXX).
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+ <!-- or: from the corresponding author upon reasonable request. -->
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+
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+ ---
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+
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+ ## Code availability
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+
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+ The code used in this study is available at [GitHub URL] (DOI: XXXXX).
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+
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+ ---
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+
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+ ## References
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+
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+ <!-- 上付き番号順。著者名 & で繋ぐ。ジャーナル名はイタリック。 -->
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+
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+ 1. Author, A. B., Author, C. D. & Author, E. F. Title of article. *Nature* **vol**, pages (year).
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+ 2. [Reference 2]
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+
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+ ---
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+
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+ ## Acknowledgements
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+
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+ [資金、技術支援、議論への謝辞]
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+
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+ ---
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+
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+ ## Author contributions
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+
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+ A.B.A. conceived the project. C.D.A. performed the experiments.
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+ E.F.A. analysed the data. All authors contributed to writing the manuscript.
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+
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+ ---
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+
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+ ## Competing interests
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+
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+ The authors declare no competing interests.
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+
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+ ---
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+
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+ ## Additional information
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+
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+ **Supplementary information** The online version contains supplementary material.
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+
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+ **Correspondence and requests for materials** should be addressed to [corresponding author].
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+
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+ ---
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+
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+ ## Figure Legends
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+ **Fig. 1 | [タイトル(太字・簡潔)].** [詳細な説明。]
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+ **a**, [パネル a の説明].
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+ **b**, [パネル b の説明].
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+ [統計情報: Data are mean ± s.e.m. (n = XX). P values by two-tailed t-test.]
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+ [Scale bar: XX µm.]
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+
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+ **Fig. 2 | [タイトル].** [説明]
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+
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+ ---
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+
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+ ## Extended Data
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+
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+ <!-- 最大 10 点(図 + 表の合計)。本文で Extended Data Fig. 1 として参照。 -->
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+ **Extended Data Fig. 1 | [タイトル].** [説明]
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+ **Extended Data Table 1 | [タイトル].**
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+
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+ | Column A | Column B |
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+ |---|---|
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+ | Data | Data |
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+
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+ ---
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+
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+ ## Supplementary Information
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+
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+ <!-- Extended Data に収まらない追加データ。ページ制限なし。 -->
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+
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+ See Supplementary Information for additional details.