@nahisaho/satori 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. package/LICENCE +0 -0
  2. package/README.md +191 -0
  3. package/bin/satori.js +95 -0
  4. package/package.json +29 -0
  5. package/src/.github/skills/scientific-academic-writing/SKILL.md +361 -0
  6. package/src/.github/skills/scientific-academic-writing/assets/acs_article.md +199 -0
  7. package/src/.github/skills/scientific-academic-writing/assets/elsevier_article.md +244 -0
  8. package/src/.github/skills/scientific-academic-writing/assets/ieee_transactions.md +212 -0
  9. package/src/.github/skills/scientific-academic-writing/assets/imrad_standard.md +181 -0
  10. package/src/.github/skills/scientific-academic-writing/assets/nature_article.md +179 -0
  11. package/src/.github/skills/scientific-academic-writing/assets/qiita_technical_article.md +385 -0
  12. package/src/.github/skills/scientific-academic-writing/assets/science_research_article.md +169 -0
  13. package/src/.github/skills/scientific-bioinformatics/SKILL.md +220 -0
  14. package/src/.github/skills/scientific-biosignal-processing/SKILL.md +357 -0
  15. package/src/.github/skills/scientific-causal-inference/SKILL.md +347 -0
  16. package/src/.github/skills/scientific-cheminformatics/SKILL.md +196 -0
  17. package/src/.github/skills/scientific-data-preprocessing/SKILL.md +413 -0
  18. package/src/.github/skills/scientific-data-simulation/SKILL.md +244 -0
  19. package/src/.github/skills/scientific-doe/SKILL.md +360 -0
  20. package/src/.github/skills/scientific-eda-correlation/SKILL.md +141 -0
  21. package/src/.github/skills/scientific-feature-importance/SKILL.md +208 -0
  22. package/src/.github/skills/scientific-image-analysis/SKILL.md +310 -0
  23. package/src/.github/skills/scientific-materials-characterization/SKILL.md +368 -0
  24. package/src/.github/skills/scientific-meta-analysis/SKILL.md +352 -0
  25. package/src/.github/skills/scientific-metabolomics/SKILL.md +326 -0
  26. package/src/.github/skills/scientific-ml-classification/SKILL.md +265 -0
  27. package/src/.github/skills/scientific-ml-regression/SKILL.md +215 -0
  28. package/src/.github/skills/scientific-multi-omics/SKILL.md +303 -0
  29. package/src/.github/skills/scientific-network-analysis/SKILL.md +257 -0
  30. package/src/.github/skills/scientific-pca-tsne/SKILL.md +235 -0
  31. package/src/.github/skills/scientific-pipeline-scaffold/SKILL.md +331 -0
  32. package/src/.github/skills/scientific-process-optimization/SKILL.md +215 -0
  33. package/src/.github/skills/scientific-publication-figures/SKILL.md +208 -0
  34. package/src/.github/skills/scientific-sequence-analysis/SKILL.md +389 -0
  35. package/src/.github/skills/scientific-spectral-signal/SKILL.md +227 -0
  36. package/src/.github/skills/scientific-statistical-testing/SKILL.md +240 -0
  37. package/src/.github/skills/scientific-survival-clinical/SKILL.md +239 -0
  38. package/src/.github/skills/scientific-time-series/SKILL.md +291 -0
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+ # ACS Article テンプレート
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+
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+ > 対象: ACS Nano, JACS, Chemistry of Materials, ACS Applied Materials & Interfaces 等
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+ > 構成: Abstract → Introduction → Experimental Section → Results and Discussion → Conclusions
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+ > 特徴: Results and Discussion が統合可。TOC/Abstract Graphic 必須。SI は Figure S1 形式。
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+ > 語数目安: Article 4,000–8,000 words / Communication ≤ 2,500 words
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+
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+ ---
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+
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+ # [タイトル — 具体的で描写的。略語は使用しない]
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+
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+ Author A,†,* Author B,‡ and Author C†
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+
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+ † Department of XXX, University of YYY, Address, City, State ZIP, Country
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+ ‡ Department of XXX, University of ZZZ, Address, City, State ZIP, Country
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+ \* E-mail: corresponding@example.com
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+
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+ ---
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+
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+ ## Abstract / TOC Graphic
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+
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+ <!-- TOC Graphic: 3.25 × 1.75 inch, 高解像度。研究の核心を視覚的に要約。 -->
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+
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+ [TOC Graphic をここに配置]
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+
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+ ---
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+
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+ ## Abstract
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+
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+ <!-- 最大 200 words。段落分けなし。 -->
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+
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+ [研究の背景→目的→手法→主要な結果(定量的)→結論を一段落で簡潔に記述。]
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+
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+ **Keywords**: keyword1, keyword2, keyword3, keyword4, keyword5
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+
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+ ---
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+
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+ ## Introduction
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+
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+ <!-- 参照は上付き番号¹ または括弧番号(1)。ジャーナルにより異なる。 -->
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+
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+ [研究分野の背景と重要性]¹,²
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+
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+ [先行研究のレビュー]³⁻⁵
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+
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+ [研究ギャップの特定]
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+
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+ Herein, we report [本研究のアプローチと目的].
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+ [主要な発見の予告を 1-2 文で述べる]
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+
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+ ---
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+
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+ ## Experimental Section
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+
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+ <!-- ACS ではこのセクション名が標準。「Methods」ではない。 -->
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+
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+ ### Materials
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+
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+ All chemicals were purchased from [supplier] and used as received
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+ unless otherwise noted. [材料の詳細: 純度、グレード、供給元]
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+
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+ ### Synthesis / Sample Preparation
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+
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+ [合成手順を詳細に記述。温度、時間、濃度を含む]
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+
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+ ### Characterization
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+
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+ [分析手法の詳細]
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+ X-ray diffraction (XRD) patterns were recorded on a [instrument]
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+ using Cu Kα radiation (λ = 1.5406 Å).
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+ Scanning electron microscopy (SEM) images were obtained using a [instrument]
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+ at an accelerating voltage of XX kV.
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+
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+ ### Computational Details
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+
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+ [計算手法を使用した場合。DFT 汎関数、基底関数等]
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+
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+ ---
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+
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+ ## Results and Discussion
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+
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+ <!-- 統合形式が標準。サブセクションで整理。 -->
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+
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+ ### [Subsection 1: 結果のテーマ]
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+
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+ [結果の記述と解釈を織り交ぜる。Figure 1a,b を参照。]
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+
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+ As shown in Figure 1a, [結果の記述].
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+ This result is consistent with [先行研究の結果],⁶ suggesting that
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+ [解釈/メカニズム].
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+
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+ ### [Subsection 2: 結果のテーマ]
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+
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+ [結果の記述と解釈。Figure 2 を参照。]
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+
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+ ### [Subsection 3: 結果のテーマ]
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+
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+ [結果の記述と解釈。Figure 3 を参照。]
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+ Additional characterization data are provided in the
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+ Supporting Information (Figure S1, Table S1).
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+
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+ ---
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+
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+ ## Conclusions
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+
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+ <!-- 簡潔に。新規性・意義を強調。1–2 段落。 -->
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+
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+ In summary, we have demonstrated [主要な成果].
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+ [定量的なハイライト結果を再掲].
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+ [研究の意義・インパクト].
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+ [将来の展望を 1-2 文で述べる].
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+
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+ ---
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+
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+ ## Associated Content
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+
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+ ### Supporting Information
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+
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+ The Supporting Information is available free of charge at [URL].
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+
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+ [SI の内容を箇条書きで列挙]
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+ - Additional characterization data (XRD, SEM, TEM)
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+ - Supplementary figures (Figure S1–SX)
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+ - Supplementary tables (Table S1–SX)
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+
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+ ---
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+
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+ ## Author Information
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+
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+ ### Corresponding Author
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+ \* E-mail: corresponding@example.com
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+
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+ ### ORCID
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+ Author A: 0000-0000-0000-0000
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+ Author B: 0000-0000-0000-0000
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+
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+ ### Author Contributions
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+ [CRediT 形式 or 自由記述]
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+ A.A. and C.C. conceived the idea. A.A. performed the experiments.
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+ B.B. conducted the computational analysis. All authors discussed the
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+ results and commented on the manuscript.
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+
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+ ### Notes
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+ The authors declare no competing financial interest.
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+
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+ ---
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+
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+ ## Acknowledgments
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+
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+ This work was supported by [funding agency] (Grant No. XXXXX).
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+ The authors thank [謝辞の対象] for [貢献内容].
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+
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+ ---
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+
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+ ## References
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+
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+ <!-- ACS 番号順引用。セミコロンで著者を区切る。 -->
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+
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+ (1) Author, A. B.; Author, C. D.; Author, E. F. Title of Article.
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+ *J. Am. Chem. Soc.* **2024**, *146*, 1234–1245.
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+ (2) [Reference 2]
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+
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+ ---
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+
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+ ## Figure Captions
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+
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+ **Figure 1.** [タイトル(太字)。] [詳細な説明。]
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+ (a) [パネル a の説明。]
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+ (b) [パネル b の説明。]
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+ [Scale bar: XX nm.]
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+
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+ **Figure 2.** [タイトル。] [説明]
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+
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+ ---
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+
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+ ## Tables
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+
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+ **Table 1.** [タイトル]ᵃ
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+
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+ | Entry | Condition | Result A | Result B |
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+ |---|---|---|---|
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+ | 1 | XX | YY | ZZ |
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+ | 2 | XX | YY | ZZ |
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+
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+ ᵃ [実験条件の脚注]
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+ ᵇ [略語の説明]
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+
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+ ---
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+
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+ ## TOC Graphic 作成ガイド
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+
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+ ```
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+ サイズ: 3.25 × 1.75 inches (8.25 × 4.45 cm)
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+ 解像度: 300 DPI 以上
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+ 形式: TIFF, EPS, or high-resolution PDF
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+ 内容: 研究のコアコンセプトを図解
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+ テキスト: 最小限(フォント 8 pt 以上)
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+ 色: フルカラー推奨
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+ ```
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+ # Elsevier Article テンプレート
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+
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+ > 対象: Acta Materialia, Biomaterials, Chemical Engineering Journal, Applied Surface Science 等
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+ > 構成: Abstract → Introduction → Materials and methods → Results → Discussion → Conclusions
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+ > 特徴: Highlights (3-5 bullets) 必須。Graphical Abstract 推奨。著者名-年引用。CRediT 必須。
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+ > 語数目安: Full-length Article 5,000–8,000 words (ジャーナルにより異なる)
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+
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+ ---
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+
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+ # [タイトル — 簡潔・情報的。略語はフルスペルで記述]
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+
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+ Author Aᵃ,*, Author Bᵇ, Author Cᵃ
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+
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+ ᵃ Department of XXX, University of YYY, Address, City, Postal Code, Country
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+ ᵇ Department of XXX, University of ZZZ, Address, City, Postal Code, Country
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+ \* Corresponding author. Tel.: +XX-XXX-XXXX; E-mail: corresponding@example.com
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+
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+ ---
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+
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+ ## Highlights
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+
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+ <!-- 必須。3–5 箇条書き。各 85 characters 以内。研究の核心を要約。 -->
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+
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+ - [Highlight 1: 主要な発見を一文で]
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+ - [Highlight 2: 手法の新規性を一文で]
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+ - [Highlight 3: 定量的なインパクトを一文で]
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+ - [Highlight 4: 応用上の意義を一文で]
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+
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+ ---
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+
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+ ## Graphical Abstract
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+
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+ <!-- 推奨。研究の全体像を一枚の図で視覚的に要約。 -->
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+ <!-- サイズ: 幅 531 pixels 以上。フォント: Arial or Times, 最小 8 pt。 -->
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+
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+ [Graphical Abstract をここに配置]
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+
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+ ---
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+
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+ ## Abstract
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+
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+ <!-- 最大 300 words。段落分けなし。 -->
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+
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+ [研究の背景と目的を述べる。]
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+ [使用した材料・手法を述べる。]
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+ [主要な結果を定量的に示す。]
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+ [結論と意義を述べる。]
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+
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+ **Keywords**: keyword1; keyword2; keyword3; keyword4; keyword5
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+ <!-- セミコロン区切り。最大 6 語。 -->
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+
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+ ---
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+
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+ ## 1. Introduction
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+
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+ <!-- 著者名-年方式で引用: (Author et al., 2024) or Author et al. (2024) -->
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+
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+ [研究分野の背景と意義] (Author and Author, 2023).
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+
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+ [先行研究のレビュー] (Author et al., 2024a, 2024b; Author and Author, 2023).
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+
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+ [研究ギャップの特定]
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+
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+ [本研究の目的と新規性を明確に述べる。]
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+ The objectives of this study are: (i) [目的 1], (ii) [目的 2], and
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+ (iii) [目的 3].
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+
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+ ---
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+
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+ ## 2. Materials and methods
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+
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+ ### 2.1. Materials
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+
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+ [材料の詳細: 名称、純度、供給元]
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+
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+ ### 2.2. Sample preparation
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+
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+ [試料作製の手順を再現可能な詳細度で記述]
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+
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+ ### 2.3. Characterization
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+
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+ [分析手法と測定条件の詳細]
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+
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+ X-ray diffraction (XRD, [instrument], [manufacturer]) was performed using
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+ Cu Kα radiation (λ = 1.5406 Å, 40 kV, 40 mA) with a scan rate of
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+ 2°/min over the 2θ range of 20–80°.
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+
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+ ### 2.4. Statistical analysis
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+
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+ [統計手法・ソフトウェア。]
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+ All data were expressed as mean ± standard deviation (SD) from at least
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+ three independent experiments. Statistical significance was determined
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+ by [検定名] using [ソフトウェア] (ver. X.X). A value of p < 0.05 was
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+ considered statistically significant.
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+
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+ ---
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+
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+ ## 3. Results
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+
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+ ### 3.1. [Result 1 のタイトル]
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+
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+ [結果の客観的な記述。Fig. 1(a) を参照。]
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+
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+ Fig. 1(a) shows [測定対象の説明].
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+ The [パラメータ] increased from XX to YY with increasing [条件]
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+ (Fig. 1(b)), indicating [客観的な傾向の記述].
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+
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+ ### 3.2. [Result 2 のタイトル]
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+
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+ [結果の記述。Fig. 2 を参照。]
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+
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+ ### 3.3. [Result 3 のタイトル]
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+
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+ [結果の記述。Table 1 を参照。]
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+
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+ ---
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+
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+ ## 4. Discussion
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+
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+ ### 4.1. [Discussion テーマ 1]
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+
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+ [結果の解釈。先行研究との比較を含む。]
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+
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+ ### 4.2. [Discussion テーマ 2]
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+
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+ [メカニズムの考察。]
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+
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+ ### 4.3. Implications and limitations
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+
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+ [研究の意義、実用的インプリケーション、限界を述べる。]
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+
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+ ---
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+
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+ ## 5. Conclusions
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+
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+ <!-- 簡潔に。箇条書きも可。1 段落 or 箇条書き。 -->
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+
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+ The main conclusions can be summarized as follows:
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+
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+ 1. [結論 1]
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+ 2. [結論 2]
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+ 3. [結論 3]
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+
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+ [将来の展望を 1-2 文で述べる。]
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+
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+ ---
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+
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+ ## CRediT authorship contribution statement
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+
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+ <!-- Elsevier 必須。14 の CRediT ロールから選択。 -->
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+
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+ **Author A**: Conceptualization, Methodology, Investigation,
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+ Writing – original draft, Visualization.
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+ **Author B**: Investigation, Formal analysis, Validation.
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+ **Author C**: Supervision, Funding acquisition,
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+ Writing – review & editing.
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+
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+ ---
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+
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+ ## Declaration of competing interest
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+
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+ The authors declare that they have no known competing financial interests
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+ or personal relationships that could have appeared to influence the work
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+ reported in this paper.
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+
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+ ---
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+
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+ ## Data availability
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+
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+ Data will be made available on request.
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+ <!-- or: The raw data required to reproduce these findings are available
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+ to download from [repository]. -->
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+
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+ ---
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+
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+ ## Acknowledgments
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+
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+ This work was supported by [funding agency] under Grant [番号].
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+ The authors would like to thank [謝辞の対象] for [貢献内容].
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+
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+ ---
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+
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+ ## Appendix A. [Supplementary data タイトル]
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+
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+ <!-- 必要に応じて。数式導出、追加データ等。 -->
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+
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+ Supplementary data to this article can be found online at
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+ https://doi.org/10.1016/j.XXXX.XXXX.XXXXXX
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+
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+ ---
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+
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+ ## References
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+
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+ <!-- 著者名-年方式(本文内)。References リストはアルファベット順。 -->
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+
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+ Author, A.B., Author, C.D., 2023. Title of article. Journal Name Vol,
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+ pages. https://doi.org/10.XXXX/XXXXX
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+
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+ Author, A.B., Author, C.D., Author, E.F., 2024. Title of article.
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+ Journal Name Vol, pages. https://doi.org/10.XXXX/XXXXX
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+
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+ ---
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+
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+ ## Figure Captions
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+
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+ **Fig. 1.** [タイトル。] (a) [パネル a の説明。] (b) [パネル b の説明。]
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+
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+ **Fig. 2.** [タイトル。] [説明]
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+
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+ ---
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+
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+ ## Tables
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+
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+ **Table 1**
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+ [タイトル]
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+
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+ | Parameter | Condition A | Condition B | Condition C |
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+ |---|---|---|---|
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+ | [Metric 1] | XX ± YY | XX ± YY | XX ± YY |
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+ | [Metric 2] | XX ± YY | XX ± YY | XX ± YY |
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+
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+ Values are expressed as mean ± SD (n = X).
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+ [略語の脚注]
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+
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+ ---
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+
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+ ## CRediT ロール一覧(参考)
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+
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+ ```
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+ 1. Conceptualization
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+ 2. Data curation
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+ 3. Formal analysis
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+ 4. Funding acquisition
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+ 5. Investigation
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+ 6. Methodology
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+ 7. Project administration
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+ 8. Resources
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+ 9. Software
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+ 10. Supervision
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+ 11. Validation
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+ 12. Visualization
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+ 13. Writing – original draft
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+ 14. Writing – review & editing
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+ ```
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+ # IEEE Transactions テンプレート
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+
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+ > 対象: IEEE Transactions on XXX, IEEE Access, IEEE Journal of XXX 等
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+ > 構成: Abstract → Index Terms → I. Introduction → II–IV. Body → V. Conclusion
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+ > 特徴: ローマ数字セクション番号。TABLE I (大文字ローマ数字)。Fig. 1(a) 形式。
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+ > 語数目安: Regular Paper 6,000–8,000 words / Short Paper/Letter ≤ 4,000 words
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+
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+ ---
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+
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+ # [タイトル — Title Case。略語はフルスペル後に括弧で定義]
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+
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+ Author A, *Member, IEEE*, Author B, *Senior Member, IEEE*,
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+ and Author C, *Fellow, IEEE*
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+
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+ ---
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+
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+ ## Abstract
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+
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+ <!-- 最大 250 words。段落分けなし。一人称を避ける。 -->
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+
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+ [背景と課題を述べる。]
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+ [提案手法を述べる。]
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+ [実験結果を定量的に示す。]
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+ [結論と意義を述べる。]
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+
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+ ---
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+
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+ ## Index Terms
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+
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+ <!-- IEEE Thesaurus から選択。アルファベット順。各語を大文字開始。 -->
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+
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+ Index Term 1, Index Term 2, Index Term 3, Index Term 4.
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+
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+ ---
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+
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+ ## I. Introduction
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+
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+ <!-- 参照は角括弧 [1]。本文と括弧の間にスペースなし。 -->
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+
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+ [研究分野の背景と重要性] [1], [2].
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+
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+ [先行研究のレビュー] [3]–[5].
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+
44
+ [先行研究の課題・限界を述べる].
45
+
46
+ [本論文の貢献を明示する]:
47
+ 1) [貢献 1]
48
+ 2) [貢献 2]
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+ 3) [貢献 3]
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+
51
+ The remainder of this paper is organized as follows.
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+ Section II describes [内容]. Section III presents [内容].
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+ Section IV discusses [内容]. Finally, Section V concludes the paper.
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+
55
+ ---
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+
57
+ ## II. [Related Work / System Model / Problem Formulation]
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+
59
+ ### *A. [Subsection タイトル]*
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+
61
+ [関連研究のレビューまたはシステムモデルの記述]
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+
63
+ ### *B. [Subsection タイトル]*
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+
65
+ [問題定式化または理論的背景]
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+
67
+ The objective function can be expressed as
68
+ $$
69
+ \min_{x} f(x) = \sum_{i=1}^{N} g_i(x_i)
70
+ $$
71
+ subject to $h(x) \leq 0$.
72
+
73
+ ---
74
+
75
+ ## III. [Proposed Method / Methodology]
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+
77
+ ### *A. [Subsection タイトル]*
78
+
79
+ [提案手法の詳細な説明]
80
+
81
+ **Algorithm 1** [アルゴリズム名]
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+
83
+ ```
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+ Input: [入力パラメータ]
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+ Output: [出力]
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+ 1: Initialize parameters
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+ 2: for t = 1 to T do
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+ 3: Compute [ステップの説明]
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+ 4: Update [パラメータの更新]
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+ 5: end for
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+ 6: return [結果]
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+ ```
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+
94
+ ### *B. [Subsection タイトル]*
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+
96
+ [手法の詳細の続き]
97
+
98
+ ---
99
+
100
+ ## IV. [Experimental Results / Performance Evaluation]
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+
102
+ ### *A. Experimental Setup*
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+
104
+ [データセット、ハードウェア、ソフトウェア環境の詳細]
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+
106
+ The experiments were conducted on [hardware spec].
107
+ The proposed method was implemented in [language/framework].
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+
109
+ ### *B. [実験 1 のタイトル]*
110
+
111
+ [結果の記述。Fig. 1(a) を参照。]
112
+
113
+ As shown in Fig. 1, the proposed method achieves [結果].
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+ TABLE I summarizes the quantitative comparison.
115
+
116
+ ### *C. [実験 2 のタイトル]*
117
+
118
+ [結果の記述。Fig. 2 を参照。]
119
+
120
+ ### *D. Computational Complexity*
121
+
122
+ [計算量の分析。O(n log n) 等の表記を含む。]
123
+
124
+ ---
125
+
126
+ ## V. Conclusion
127
+
128
+ [主要な貢献を再掲する。]
129
+ [結果のハイライトを述べる。]
130
+ [今後の課題を 1-2 文で述べる。]
131
+
132
+ ---
133
+
134
+ ## Appendix
135
+
136
+ <!-- 必要に応じて。定理の証明、追加の数式展開等。 -->
137
+
138
+ ### A. [Proof of Theorem 1]
139
+
140
+ [証明の詳細]
141
+
142
+ ---
143
+
144
+ ## Acknowledgment
145
+
146
+ <!-- "Acknowledgments" ではなく単数形 "Acknowledgment" -->
147
+
148
+ The authors would like to thank [謝辞の対象] for [貢献内容].
149
+
150
+ ---
151
+
152
+ ## References
153
+
154
+ <!-- 角括弧番号順。著者名はイニシャル先行。ジャーナル名はイタリック。 -->
155
+
156
+ [1] A. B. Author, C. D. Author, and E. F. Author, "Title of article,"
157
+ *IEEE Trans. XXX*, vol. XX, no. Y, pp. 123–135, Mon. Year.
158
+
159
+ [2] A. B. Author and C. D. Author, "Title of conference paper," in
160
+ *Proc. IEEE Conf. XXX*, City, Country, Year, pp. 100–105.
161
+
162
+ [3] A. B. Author, *Title of Book*, Xth ed. City, State: Publisher, Year.
163
+
164
+ ---
165
+
166
+ ## Figure Captions
167
+
168
+ **Fig. 1.** [タイトル。] (a) [パネル a の説明。] (b) [パネル b の説明。]
169
+
170
+ **Fig. 2.** [タイトル。] [説明]
171
+
172
+ ---
173
+
174
+ ## Tables
175
+
176
+ **TABLE I**
177
+ [タイトル — 大文字]
178
+
179
+ | Method | Metric A | Metric B | Metric C |
180
+ |---|---|---|---|
181
+ | Baseline [3] | XX.X | YY.Y | ZZ.Z |
182
+ | Method A [5] | XX.X | YY.Y | ZZ.Z |
183
+ | **Proposed** | **XX.X** | **YY.Y** | **ZZ.Z** |
184
+
185
+ <!-- ベスト値は太字で強調 -->
186
+
187
+ ---
188
+
189
+ ## Author Biography
190
+
191
+ <!-- IEEE Transactions では著者略歴が必要 -->
192
+
193
+ **Author A** (M'XX–SM'YY) received the B.S. degree in [分野] from
194
+ [大学], [国], in [年], and the Ph.D. degree from [大学] in [年].
195
+ [現在の所属と研究分野を記述。]
196
+
197
+ **Author B** [略歴]
198
+
199
+ ---
200
+
201
+ ## IEEE 数式表記規約
202
+
203
+ ```
204
+ - スカラー: イタリック (x, y, α)
205
+ - ベクトル: 太字小文字 (𝐱, 𝐲)
206
+ - 行列: 太字大文字 (𝐀, 𝐁)
207
+ - 集合: カリグラフィック (𝒜, ℬ)
208
+ - 確率: Pr{·} or P(·)
209
+ - 期待値: E[·]
210
+ - 数式番号: 右寄せ (1), (2), ...
211
+ - 参照: as shown in (1) or from (1)
212
+ ```