@morscherlab/mint-sdk 1.2.0-beta.2 → 1.2.0-beta.3

package/src/__tests__/docs/frontendDocsCatalog.test.ts

@@ -1,425 +0,0 @@
-import { execFileSync } from 'node:child_process'
-import { existsSync, readFileSync } from 'node:fs'
-import { dirname, join, resolve } from 'node:path'
-import { fileURLToPath } from 'node:url'
-import { describe, expect, it } from 'vitest'
-import { compile } from 'vue'
-import {
-  DiagnosticCategory,
-  ModuleKind,
-  ScriptTarget,
-  transpileModule,
-} from 'typescript'
-
-interface FrontendManifest {
-  categories: {
-    components: Array<{
-      name: string
-      deprecated?: boolean
-      replacement?: string
-      examples?: Array<{ title: string; language: string; code: string }>
-      props?: Array<{ name: string }>
-    }>
-    composables: Array<{
-      name: string
-      members?: Array<{ name: string }>
-      examples?: Array<{ title: string; language: string; code: string }>
-    }>
-    templateExports: Array<{ name: string }>
-    templatePacks: Array<{ name: string }>
-  }
-  exports: Array<{ name: string }>
-}
-
-const TEST_DIR = dirname(fileURLToPath(import.meta.url))
-const SDK_ROOT = resolve(TEST_DIR, '../../..')
-const CORE_USAGE_NAMES = [
-  'ArtifactSelectorModal',
-  'ControlWorkspaceView',
-  'ExperimentSelectorModal',
-  'GeneratedPluginView',
-  'GeneratedResultRenderer',
-  'JobsStatusTray',
-  'PluginWorkspaceView',
-  'useAnalysisArtifacts',
-  'useAppExperiment',
-  'usePluginJobs',
-]
-
-function extractFrontendManifest(): FrontendManifest {
-  const output = execFileSync('bun', ['run', 'scripts/extract-docs.ts'], {
-    cwd: SDK_ROOT,
-    encoding: 'utf8',
-  })
-  return JSON.parse(output) as FrontendManifest
-}
-
-function parseComponentExports(): string[] {
-  const componentsDir = join(SDK_ROOT, 'src', 'components')
-  const content = readFileSync(join(componentsDir, 'index.ts'), 'utf8')
-  return [...content.matchAll(
-    /export\s+\{\s*default\s+as\s+(\w+)(?:\s*,\s*[^}]*)?\s*\}\s+from\s+['"]\.\/([\w-]+)\.vue['"]/g,
-  )]
-    .filter((match) => existsSync(join(componentsDir, `${match[2]}.vue`)))
-    .map(match => match[1])
-    .sort()
-}
-
-function parseRootComponentExports(): string[] {
-  const content = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-  if (/export\s+\*\s+from\s+['"]\.\/components['"]/.test(content)) {
-    return parseComponentExports()
-  }
-
-  const names = new Set<string>()
-
-  for (const match of content.matchAll(/export\s+\{([^}]*)\}\s+from\s+['"]\.\/components['"]/g)) {
-    const body = match[1].replace(/\/\/.*$/gm, '')
-    for (const item of body.split(',')) {
-      const spec = item.trim()
-      if (!spec || spec.startsWith('type ')) continue
-      const name = spec.split(/\s+as\s+/, 1)[0].trim()
-      if (/^[A-Z]\w*$/.test(name)) names.add(name)
-    }
-  }
-
-  return [...names].sort()
-}
-
-function parseDeprecatedComponentExports(): Record<string, string> {
-  const componentsDir = join(SDK_ROOT, 'src', 'components')
-  const content = readFileSync(join(componentsDir, 'index.ts'), 'utf8')
-  const deprecated = new Map<string, string>()
-  let pendingJsdoc = ''
-  let jsdocLines: string[] = []
-  let inJsdoc = false
-
-  for (const line of content.split('\n')) {
-    const trimmed = line.trim()
-
-    if (inJsdoc) {
-      jsdocLines.push(line)
-      if (trimmed.includes('*/')) {
-        pendingJsdoc = jsdocLines.join('\n')
-        jsdocLines = []
-        inJsdoc = false
-      }
-      continue
-    }
-
-    if (trimmed.startsWith('/**')) {
-      jsdocLines = [line]
-      if (trimmed.includes('*/')) {
-        pendingJsdoc = jsdocLines.join('\n')
-        jsdocLines = []
-      } else {
-        inJsdoc = true
-      }
-      continue
-    }
-
-    const exportMatch = line.match(
-      /export\s+\{\s*default\s+as\s+(\w+)(?:\s*,\s*[^}]*)?\s*\}\s+from\s+['"]\.\/([\w-]+)\.vue['"]/,
-    )
-    if (!exportMatch) continue
-
-    if (/@deprecated\b/i.test(pendingJsdoc)) {
-      const replacement = pendingJsdoc.match(
-        /@deprecated[\s\S]*?\b(?:use|prefer)\s+`?([A-Za-z_][A-Za-z0-9_]*)\(?\)?`?\s+instead/i,
-      )?.[1] ?? ''
-      deprecated.set(exportMatch[1], replacement)
-    }
-    pendingJsdoc = ''
-  }
-
-  return Object.fromEntries([...deprecated.entries()].sort(([a], [b]) => a.localeCompare(b)))
-}
-
-function parseDocumentedComposableExports(): string[] {
-  const scriptContent = readFileSync(join(SDK_ROOT, 'scripts', 'extract-docs-composables.ts'), 'utf8')
-  const helperNames = new Set(
-    [...(scriptContent.match(
-      /const DOCUMENTED_COMPOSABLE_EXPORTS = new Set\(\[([\s\S]*?)\]\);/,
-    )?.[1] ?? '').matchAll(/"(\w+)"/g)].map(match => match[1]),
-  )
-  const indexContent = readFileSync(join(SDK_ROOT, 'src', 'composables', 'index.ts'), 'utf8')
-  const names: string[] = []
-
-  for (const match of indexContent.matchAll(/export\s+\{([\s\S]*?)\}\s+from\s+['"]\.\/[\w-]+['"]/g)) {
-    for (const item of match[1].split(',')) {
-      const spec = item.trim()
-      if (!spec || spec.startsWith('type ')) continue
-      const name = spec.split(/\s+as\s+/, 1)[0].trim()
-      if (name.startsWith('use') || helperNames.has(name)) {
-        names.push(name)
-      }
-    }
-  }
-
-  return [...new Set(names)].sort()
-}
-
-function parseRootComposableExports(): string[] {
-  const rootContent = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-  const composableExports = parseDocumentedComposableExports()
-
-  if (/export\s+\*\s+from\s+['"]\.\/composables['"]/.test(rootContent)) {
-    return composableExports
-  }
-
-  const names: string[] = []
-  for (const match of rootContent.matchAll(/export\s+\{([^}]*)\}\s+from\s+['"]\.\/composables['"]/g)) {
-    for (const item of match[1].split(',')) {
-      const spec = item.trim()
-      if (!spec || spec.startsWith('type ')) continue
-      const name = spec.split(/\s+as\s+/, 1)[0].trim()
-      if (name) names.push(name)
-    }
-  }
-
-  return [...new Set(names)].sort()
-}
-
-function parseTemplateExports(): string[] {
-  const indexContent = readFileSync(join(SDK_ROOT, 'src', 'templates', 'index.ts'), 'utf8')
-  const names = new Set<string>()
-
-  for (const match of indexContent.matchAll(/export\s+(?:type\s+)?\{(?<body>[\s\S]*?)\}\s+from\s+['"][^'"]+['"]/g)) {
-    const body = match.groups?.body ?? ''
-    for (const item of body.split(',')) {
-      const spec = item.trim()
-      if (!spec) continue
-      const normalized = spec.startsWith('type ') ? spec.slice(5).trim() : spec
-      const name = normalized.split(/\s+as\s+/, 1)[0].trim()
-      if (/^[A-Za-z]\w*$/.test(name)) names.add(name)
-    }
-  }
-
-  return [...names].sort()
-}
-
-function missingFromManifest(expected: string[], actual: string[]): string[] {
-  const actualNames = new Set(actual)
-  return expected.filter(name => !actualNames.has(name))
-}
-
-describe('frontend docs catalog coverage', () => {
-  it('documents every public component export', () => {
-    const manifest = extractFrontendManifest()
-    const publicComponents = parseComponentExports()
-    const documentedComponents = manifest.categories.components.map(item => item.name).sort()
-
-    expect(missingFromManifest(publicComponents, documentedComponents)).toEqual([])
-    expect(missingFromManifest(documentedComponents, publicComponents)).toEqual([])
-  })
-
-  it('keeps source-owned examples for the core frontend documentation contract', () => {
-    const manifest = extractFrontendManifest()
-    const documented = [
-      ...manifest.categories.components,
-      ...manifest.categories.composables,
-    ]
-    const byName = new Map(documented.map(item => [item.name, item]))
-    expect(CORE_USAGE_NAMES.filter(name => !byName.get(name)?.examples?.length)).toEqual([])
-  })
-
-  it('keeps core frontend examples syntactically valid', () => {
-    const manifest = extractFrontendManifest()
-    const documented = [
-      ...manifest.categories.components,
-      ...manifest.categories.composables,
-    ]
-    const byName = new Map(documented.map(item => [item.name, item]))
-    const invalid: string[] = []
-
-    for (const name of CORE_USAGE_NAMES) {
-      for (const example of byName.get(name)?.examples ?? []) {
-        if (example.language === 'vue') {
-          try {
-            compile(example.code)
-          } catch {
-            invalid.push(name)
-          }
-          continue
-        }
-        const result = transpileModule(example.code, {
-          compilerOptions: {
-            module: ModuleKind.ESNext,
-            target: ScriptTarget.ESNext,
-          },
-          reportDiagnostics: true,
-        })
-        if (result.diagnostics?.some(diagnostic => diagnostic.category === DiagnosticCategory.Error)) {
-          invalid.push(name)
-        }
-      }
-    }
-
-    expect(invalid).toEqual([])
-  })
-
-  it('documents required props for generated high-level components', () => {
-    const manifest = extractFrontendManifest()
-    const byName = new Map(manifest.categories.components.map(item => [item.name, item]))
-
-    expect({
-      GeneratedPluginView: byName.get('GeneratedPluginView')?.props?.map(prop => prop.name),
-      GeneratedResultRenderer: byName.get('GeneratedResultRenderer')?.props?.map(prop => prop.name),
-    }).toEqual({
-      GeneratedPluginView: ['baseUrl', 'showStandaloneLabel', 'transport'],
-      GeneratedResultRenderer: ['result'],
-    })
-  })
-
-  it('documents only the source-driven JobsStatusTray props', () => {
-    const manifest = extractFrontendManifest()
-    const jobsStatusTray = manifest.categories.components.find(item => item.name === 'JobsStatusTray')
-
-    expect(jobsStatusTray?.props?.map(prop => prop.name).sort()).toEqual([
-      'loadOnMount',
-      'source',
-      'teleportTo',
-      'title',
-    ])
-  })
-
-  it('re-exports every public component from the root SDK entrypoint', () => {
-    const publicComponents = parseComponentExports()
-    const rootComponents = parseRootComponentExports()
-
-    expect(missingFromManifest(publicComponents, rootComponents)).toEqual([])
-  })
-
-  it('marks every deprecated public component export with its replacement', () => {
-    const manifest = extractFrontendManifest()
-    const expected = parseDeprecatedComponentExports()
-    const documented = Object.fromEntries(
-      manifest.categories.components
-        .filter(item => item.deprecated === true)
-        .map(item => [item.name, item.replacement ?? ''])
-        .sort(([a], [b]) => a.localeCompare(b)),
-    )
-
-    expect(documented).toEqual(expected)
-  })
-
-  it('keeps retired compatibility APIs out of public SDK entrypoints', () => {
-    const rootIndex = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-    const componentsIndex = readFileSync(join(SDK_ROOT, 'src', 'components', 'index.ts'), 'utf8')
-    const composablesIndex = readFileSync(join(SDK_ROOT, 'src', 'composables', 'index.ts'), 'utf8')
-    const composableExports = composablesIndex.replace(/from\s+['"][^'"]+['"]/g, '')
-
-    const retiredNames = [
-      'ToastNotification',
-      'SettingsButton',
-      'GroupingModal',
-      'FormSection',
-      'FormFieldRenderer',
-      'AppPageSelector',
-      'AppPillNav',
-      'usePluginApi',
-      'UsePluginApiOptions',
-      'useJobsStatusTray',
-      'UseJobsStatusTrayOptions',
-      'UseJobsStatusTrayReturn',
-      'JobsStatusTrayAdapter',
-      'JobStreamMessage',
-      'usePluginConfig',
-      'UsePluginConfigReturn',
-      'usePluginClient',
-    ]
-
-    for (const name of retiredNames) {
-      expect(rootIndex).not.toMatch(new RegExp(`\\b${name}\\b`))
-      expect(componentsIndex).not.toMatch(new RegExp(`\\b${name}\\b`))
-      expect(composableExports).not.toMatch(new RegExp(`\\b${name}\\b`))
-    }
-  })
-
-  it('documents every public composable/helper export used by docs and doctor', () => {
-    const manifest = extractFrontendManifest()
-    const publicComposables = parseDocumentedComposableExports()
-    const documentedComposables = manifest.categories.composables.map(item => item.name).sort()
-
-    expect(missingFromManifest(publicComposables, documentedComposables)).toEqual([])
-    expect(missingFromManifest(documentedComposables, publicComposables)).toEqual([])
-  })
-
-  it('documents generated component binding helpers for control models', () => {
-    const manifest = extractFrontendManifest()
-    const documentedComposables = new Set(manifest.categories.composables.map(item => item.name))
-
-    expect(documentedComposables.has('defineControlComponentBindings')).toBe(true)
-    expect(documentedComposables.has('controlValuesToComponentBindings')).toBe(true)
-    expect(documentedComposables.has('controlValuesToComponentBindingsById')).toBe(true)
-    expect(documentedComposables.has('defineWellPlateDoseComponentBindings')).toBe(true)
-  })
-
-  it('re-exports every documented composable/helper from the root SDK entrypoint', () => {
-    const publicComposables = parseDocumentedComposableExports()
-    const rootComposables = parseRootComposableExports()
-
-    expect(missingFromManifest(publicComposables, rootComposables)).toEqual([])
-  })
-
-  it('re-exports the public types barrel from the root SDK entrypoint', () => {
-    const rootIndex = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-
-    expect(rootIndex).toMatch(/export\s+type\s+\*\s+from\s+['"]\.\/types['"]/)
-  })
-
-  it('re-exports the public stores barrel from the root SDK entrypoint', () => {
-    const rootIndex = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-
-    expect(rootIndex).toMatch(/export\s+\*\s+from\s+['"]\.\/stores['"]/)
-  })
-
-  it('re-exports the public templates barrel from the root SDK entrypoint', () => {
-    const rootIndex = readFileSync(join(SDK_ROOT, 'src', 'index.ts'), 'utf8')
-
-    expect(rootIndex).toMatch(/export\s+\*\s+from\s+['"]\.\/templates['"]/)
-  })
-
-  it('expands root barrel exports into the docs manifest', () => {
-    const manifest = extractFrontendManifest()
-    const rootExports = manifest.exports.map(item => item.name)
-
-    expect(rootExports).toEqual(expect.arrayContaining([
-      'BaseButton',
-      'DoseDesignWorkspaceView',
-      'WellPlate',
-      'useForm',
-      'useReagentSeries',
-      'ConversionResult',
-      'FormSectionSchema',
-      'createWellPlateScreenCollection',
-    ]))
-  })
-
-  it('documents curated biology template packs', () => {
-    const manifest = extractFrontendManifest()
-
-    expect(manifest.categories.templatePacks.map(item => item.name)).toEqual([
-      'cell-culture-screen',
-      'omics-assay',
-      'longitudinal-study',
-      'molecular-assay',
-    ])
-  })
-
-  it('documents every public template subpath export used by doctor', () => {
-    const manifest = extractFrontendManifest()
-    const publicTemplateExports = parseTemplateExports()
-    const documentedTemplateExports = manifest.categories.templateExports.map(item => item.name).sort()
-
-    expect(missingFromManifest(publicTemplateExports, documentedTemplateExports)).toEqual([])
-    expect(missingFromManifest(documentedTemplateExports, publicTemplateExports)).toEqual([])
-  })
-
-  it('extracts return members from external type files', () => {
-    const manifest = extractFrontendManifest()
-    const useFormBuilder = manifest.categories.composables.find(item => item.name === 'useFormBuilder')
-
-    expect(useFormBuilder?.members?.map(member => member.name)).toContain('updateSchema')
-  })
-})

package/src/__tests__/fixtures/auto-group/mixed-lc-ms-batch.txt

@@ -1,187 +0,0 @@
-exp281_260413_YS_H2_400ulES_1ul_071
-exp281_260413_YS_K2_400ulES_1ul_070
-exp281_260413_YS_L2_400ulES_1ul_069
-exp281_260415_SAM_SAH_SAHStandard_5nM_002
-exp281_260415_SAM_SAH_SAHStandard_5nM_093
-exp281_260415_SAM_SAH_SAMstandard_5nM_001
-exp281_260415_SAM_SAH_SAMstandard_5nM_092
-exp281_260415_SAM_SAH_Tissues_ExtractionS_00B
-exp281_260415_SAM_SAH_Tissues_ExtractionS_091
-exp281_260415_SAM_SAH_Tissues_IQC_003
-exp281_260415_SAM_SAH_Tissues_IQC_056
-exp281_260415_SAM_SAH_Tissues_IQC_090
-exp281_260415_SAM_SAH_Tissues_Kidney_M10_085
-exp281_260415_SAM_SAH_Tissues_Kidney_M11_080
-exp281_260415_SAM_SAH_Tissues_Kidney_M12_027
-exp281_260415_SAM_SAH_Tissues_Kidney_M13_048
-exp281_260415_SAM_SAH_Tissues_Kidney_M14_023
-exp281_260415_SAM_SAH_Tissues_Kidney_M15_074
-exp281_260415_SAM_SAH_Tissues_Kidney_M16_088
-exp281_260415_SAM_SAH_Tissues_Kidney_M17_070
-exp281_260415_SAM_SAH_Tissues_Kidney_M18_006
-exp281_260415_SAM_SAH_Tissues_Kidney_M19_033
-exp281_260415_SAM_SAH_Tissues_Kidney_M1_050
-exp281_260415_SAM_SAH_Tissues_Kidney_M20_004
-exp281_260415_SAM_SAH_Tissues_Kidney_M21_061
-exp281_260415_SAM_SAH_Tissues_Kidney_M22_032
-exp281_260415_SAM_SAH_Tissues_Kidney_M23_024
-exp281_260415_SAM_SAH_Tissues_Kidney_M24_040
-exp281_260415_SAM_SAH_Tissues_Kidney_M25_045
-exp281_260415_SAM_SAH_Tissues_Kidney_M26_026
-exp281_260415_SAM_SAH_Tissues_Kidney_M27_067
-exp281_260415_SAM_SAH_Tissues_Kidney_M2_086
-exp281_260415_SAM_SAH_Tissues_Kidney_M3_083
-exp281_260415_SAM_SAH_Tissues_Kidney_M4_068
-exp281_260415_SAM_SAH_Tissues_Kidney_M5_049
-exp281_260415_SAM_SAH_Tissues_Kidney_M6_069
-exp281_260415_SAM_SAH_Tissues_Kidney_M7_054
-exp281_260415_SAM_SAH_Tissues_Kidney_M8_079
-exp281_260415_SAM_SAH_Tissues_Kidney_M9_009
-exp281_260415_SAM_SAH_Tissues_Liver_M10_011
-exp281_260415_SAM_SAH_Tissues_Liver_M11_075
-exp281_260415_SAM_SAH_Tissues_Liver_M12_022
-exp281_260415_SAM_SAH_Tissues_Liver_M13_060
-exp281_260415_SAM_SAH_Tissues_Liver_M14_025
-exp281_260415_SAM_SAH_Tissues_Liver_M15_031
-exp281_260415_SAM_SAH_Tissues_Liver_M16_078
-exp281_260415_SAM_SAH_Tissues_Liver_M17_029
-exp281_260415_SAM_SAH_Tissues_Liver_M18_046
-exp281_260415_SAM_SAH_Tissues_Liver_M19_073
-exp281_260415_SAM_SAH_Tissues_Liver_M1_047
-exp281_260415_SAM_SAH_Tissues_Liver_M20_072
-exp281_260415_SAM_SAH_Tissues_Liver_M21_042
-exp281_260415_SAM_SAH_Tissues_Liver_M22_030
-exp281_260415_SAM_SAH_Tissues_Liver_M23_014
-exp281_260415_SAM_SAH_Tissues_Liver_M24_043
-exp281_260415_SAM_SAH_Tissues_Liver_M25_008
-exp281_260415_SAM_SAH_Tissues_Liver_M26_057
-exp281_260415_SAM_SAH_Tissues_Liver_M27_053
-exp281_260415_SAM_SAH_Tissues_Liver_M2_019
-exp281_260415_SAM_SAH_Tissues_Liver_M3_017
-exp281_260415_SAM_SAH_Tissues_Liver_M4_007
-exp281_260415_SAM_SAH_Tissues_Liver_M5_059
-exp281_260415_SAM_SAH_Tissues_Liver_M6_005
-exp281_260415_SAM_SAH_Tissues_Liver_M7_035
-exp281_260415_SAM_SAH_Tissues_Liver_M8_036
-exp281_260415_SAM_SAH_Tissues_Liver_M9_055
-exp281_260415_SAM_SAH_Tissues_Tumor_M10_037
-exp281_260415_SAM_SAH_Tissues_Tumor_M11_015
-exp281_260415_SAM_SAH_Tissues_Tumor_M12_062
-exp281_260415_SAM_SAH_Tissues_Tumor_M13_087
-exp281_260415_SAM_SAH_Tissues_Tumor_M14_081
-exp281_260415_SAM_SAH_Tissues_Tumor_M15_016
-exp281_260415_SAM_SAH_Tissues_Tumor_M16_013
-exp281_260415_SAM_SAH_Tissues_Tumor_M17_084
-exp281_260415_SAM_SAH_Tissues_Tumor_M18_021
-exp281_260415_SAM_SAH_Tissues_Tumor_M19_064
-exp281_260415_SAM_SAH_Tissues_Tumor_M1_066
-exp281_260415_SAM_SAH_Tissues_Tumor_M20_012
-exp281_260415_SAM_SAH_Tissues_Tumor_M21_038
-exp281_260415_SAM_SAH_Tissues_Tumor_M22_034
-exp281_260415_SAM_SAH_Tissues_Tumor_M23_089
-exp281_260415_SAM_SAH_Tissues_Tumor_M24_028
-exp281_260415_SAM_SAH_Tissues_Tumor_M25_063
-exp281_260415_SAM_SAH_Tissues_Tumor_M26_018
-exp281_260415_SAM_SAH_Tissues_Tumor_M27_082
-exp281_260415_SAM_SAH_Tissues_Tumor_M2_076
-exp281_260415_SAM_SAH_Tissues_Tumor_M3_071
-exp281_260415_SAM_SAH_Tissues_Tumor_M4_041
-exp281_260415_SAM_SAH_Tissues_Tumor_M5_051
-exp281_260415_SAM_SAH_Tissues_Tumor_M6_044
-exp281_260415_SAM_SAH_Tissues_Tumor_M7_065
-exp281_260415_SAM_SAH_Tissues_Tumor_M8_010
-exp281_260415_SAM_SAH_Tissues_Tumor_M9_052
-exp280_260413_SK_ESwithSpikeIn_02
-exp280_260413_SK_ESwithSpikeIn_1to100_Stock_05
-exp280_260413_SK_ESwithSpikeIn_1to100_Stock_10
-exp280_260413_SK_ESwithSpikeIn_1to10_04
-exp280_260413_SK_SAM_5nM_03
-exp280_260413_SK_SAM_5nM_06
-exp280_260413_YS_Experiment_EQC_002
-exp280_260413_YS_Experiment_EQC_067
-exp280_260413_YS_Experiment_EQC_102
-exp280_260413_YS_Experiment_Plasma_M10_031
-exp280_260413_YS_Experiment_Plasma_M10_0dot5ul_061
-exp280_260413_YS_Experiment_Plasma_M10_0dot5ul_097
-exp280_260413_YS_Experiment_Plasma_M11_018
-exp280_260413_YS_Experiment_Plasma_M11_0dot5ul_054
-exp280_260413_YS_Experiment_Plasma_M11_0dot5ul_090
-exp280_260413_YS_Experiment_Plasma_M12_026
-exp280_260413_YS_Experiment_Plasma_M12_0dot5ul_059
-exp280_260413_YS_Experiment_Plasma_M12_0dot5ul_095
-exp280_260413_YS_Experiment_Plasma_M13_027
-exp280_260413_YS_Experiment_Plasma_M13_0dot5ul_037
-exp280_260413_YS_Experiment_Plasma_M13_0dot5ul_073
-exp280_260413_YS_Experiment_Plasma_M14_011
-exp280_260413_YS_Experiment_Plasma_M14_0dot5ul_058
-exp280_260413_YS_Experiment_Plasma_M14_0dot5ul_094
-exp280_260413_YS_Experiment_Plasma_M15_029
-exp280_260413_YS_Experiment_Plasma_M15_0dot5ul_065
-exp280_260413_YS_Experiment_Plasma_M15_0dot5ul_100
-exp280_260413_YS_Experiment_Plasma_M16_024
-exp280_260413_YS_Experiment_Plasma_M16_0dot5ul_048
-exp280_260413_YS_Experiment_Plasma_M16_0dot5ul_084
-exp280_260413_YS_Experiment_Plasma_M17_006
-exp280_260413_YS_Experiment_Plasma_M17_0dot5ul_055
-exp280_260413_YS_Experiment_Plasma_M17_0dot5ul_091
-exp280_260413_YS_Experiment_Plasma_M18_013
-exp280_260413_YS_Experiment_Plasma_M18_0dot5ul_064
-exp280_260413_YS_Experiment_Plasma_M18_0dot5ul_099
-exp280_260413_YS_Experiment_Plasma_M19_030
-exp280_260413_YS_Experiment_Plasma_M19_0dot5ul_051
-exp280_260413_YS_Experiment_Plasma_M19_0dot5ul_087
-exp280_260413_YS_Experiment_Plasma_M1_015
-exp280_260413_YS_Experiment_Plasma_M1_0dot5ul_039
-exp280_260413_YS_Experiment_Plasma_M1_0dot5ul_075
-exp280_260413_YS_Experiment_Plasma_M20_005
-exp280_260413_YS_Experiment_Plasma_M20_0dot5ul_049
-exp280_260413_YS_Experiment_Plasma_M20_0dot5ul_085
-exp280_260413_YS_Experiment_Plasma_M21_004
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-exp280_260413_YS_Experiment_Plasma_M21_0dot5ul_086
-exp280_260413_YS_Experiment_Plasma_M22_009
-exp280_260413_YS_Experiment_Plasma_M22_0dot5ul_040
-exp280_260413_YS_Experiment_Plasma_M22_0dot5ul_076
-exp280_260413_YS_Experiment_Plasma_M23_023
-exp280_260413_YS_Experiment_Plasma_M23_0dot5ul_066
-exp280_260413_YS_Experiment_Plasma_M23_0dot5ul_101
-exp280_260413_YS_Experiment_Plasma_M24_003
-exp280_260413_YS_Experiment_Plasma_M24_0dot5ul_042
-exp280_260413_YS_Experiment_Plasma_M24_0dot5ul_078
-exp280_260413_YS_Experiment_Plasma_M25_007
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-exp280_260413_YS_Experiment_Plasma_M25_0dot5ul_074
-exp280_260413_YS_Experiment_Plasma_M26_014
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-exp280_260413_YS_Experiment_Plasma_M27_0dot5ul_098
-exp280_260413_YS_Experiment_Plasma_M2_020
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-exp280_260413_YS_Experiment_Plasma_M3_025
-exp280_260413_YS_Experiment_Plasma_M3_0dot5ul_060
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-exp280_260413_YS_Experiment_Plasma_M4_008
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-exp280_260413_YS_Experiment_Plasma_M5_012
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-exp280_260413_YS_Experiment_Plasma_M6_016
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-exp280_260413_YS_Experiment_Plasma_M7_017
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-exp280_260413_YS_Experiment_Plasma_M7_0dot5ul_077
-exp280_260413_YS_Experiment_Plasma_M8_022
-exp280_260413_YS_Experiment_Plasma_M8_0dot5ul_043
-exp280_260413_YS_Experiment_Plasma_M8_0dot5ul_079
-exp280_260413_YS_Experiment_Plasma_M9_021
-exp280_260413_YS_Experiment_Plasma_M9_0dot5ul_052
-exp280_260413_YS_Experiment_Plasma_M9_0dot5ul_088
-exp280_260413_YS_Experiment_SAH_1nM_036
-exp280_260413_YS_Experiment_SAH_1nM_072
-exp280_260413_YS_Experiment_SAM_1nM_035
-exp280_260413_YS_Experiment_SAM_1nM_071

package/src/__tests__/fixtures/templates/dose-response.json

@@ -1,81 +0,0 @@
-{
-  "template_id": "dose-response",
-  "template_version": "1.0",
-  "kind": "experiment-design",
-  "data": {
-    "compounds": [
-      {
-        "id": "drug-a",
-        "name": "Drug A",
-        "concentrations": [10, 1, 0.1],
-        "metadata": {
-          "color": "#10B981"
-        }
-      }
-    ],
-    "unit": "uM",
-    "replicates": 2,
-    "controls": [
-      {
-        "id": "dmso",
-        "name": "DMSO",
-        "role": "vehicle",
-        "vehicle": "DMSO",
-        "metadata": {}
-      }
-    ],
-    "layout": {
-      "plates": [
-        {
-          "id": "plate-1",
-          "name": "Dose response plate",
-          "format": 96,
-          "wells": {
-            "A1": {
-              "id": "A1",
-              "row": 0,
-              "col": 0,
-              "state": "filled",
-              "sampleType": "dmso",
-              "metadata": {
-                "role": "vehicle"
-              }
-            },
-            "A2": {
-              "id": "A2",
-              "row": 0,
-              "col": 1,
-              "state": "filled",
-              "sampleType": "drug-a",
-              "value": 10,
-              "metadata": {
-                "compound": "Drug A",
-                "concentration": 10
-              }
-            }
-          }
-        }
-      ],
-      "samples": [
-        {
-          "id": "dmso",
-          "name": "DMSO",
-          "color": "#3B82F6"
-        },
-        {
-          "id": "drug-a",
-          "name": "Drug A",
-          "color": "#10B981"
-        }
-      ],
-      "activePlateId": "plate-1",
-      "selectedWells": []
-    },
-    "metadata": {
-      "assay": "cell viability"
-    }
-  },
-  "metadata": {
-    "source": "fixture"
-  }
-}