@morscherlab/mint-sdk 1.2.0-beta.2 → 1.2.0-beta.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +7 -13
- package/dist/EmptyState-p90quq8Z.js +0 -2
- package/dist/{ExperimentPopover-tLwJ7XF4.js → ExperimentPopover-Bn6PIGHE.js} +5 -10
- package/dist/ExperimentPopover-C1e0cd94.js +3 -0
- package/dist/ExperimentSelectorModal-DCWTFyos.js +4 -0
- package/dist/{ExperimentSelectorModal-DyPAUCLw.js → ExperimentSelectorModal-DGhrJSSV.js} +6 -11
- package/dist/SettingsModal-Bpybht86.js +5 -0
- package/dist/{SettingsModal-BgKY93zh.js → SettingsModal-wF2btHu6.js} +7 -12
- package/dist/{analysisArtifactTypes-DQ0MjwHZ.js → analysisArtifactTypes-ejqR8MX3.js} +0 -2
- package/dist/components/JobsStatusTray.vue.d.ts +0 -2
- package/dist/components/SmartGroupFieldRecipe.vue.d.ts +2 -2
- package/dist/components/SmartGroupManual.vue.d.ts +2 -2
- package/dist/components/WellPlate.vue.d.ts +1 -1
- package/dist/components/index.d.ts +0 -9
- package/dist/components/index.js +6 -6
- package/dist/{components-DkHddRMl.js → components-DpyzaeIc.js} +1466 -3375
- package/dist/composables/index.d.ts +1 -8
- package/dist/composables/index.js +9 -9
- package/dist/composables/useAnalysisArtifacts.d.ts +0 -2
- package/dist/composables/useAuth.d.ts +0 -2
- package/dist/composables/useAutoGroup.d.ts +1 -30
- package/dist/composables/useGeneratedAnalysis.d.ts +0 -2
- package/dist/composables/useJobsStatusTray.d.ts +4 -17
- package/dist/composables/usePluginClient.d.ts +0 -2
- package/dist/{composables-C_i90sGS.js → composables-yz8bTkEV.js} +59 -629
- package/dist/{experiment-Cq145oEW.js → experiment-D08H_TIH.js} +1 -3
- package/dist/experiment-utils-CLnzPPq5.js +0 -2
- package/dist/index.js +33 -18
- package/dist/jobs.d.ts +1 -15
- package/dist/permissions.d.ts +0 -5
- package/dist/permissions.js +2 -4
- package/dist/stores/index.js +2 -2
- package/dist/styles.css +265 -2831
- package/dist/tailwind.preset.js +0 -2
- package/dist/templates/catalog.d.ts +4 -4
- package/dist/templates/index.js +2 -2
- package/dist/templates/presets.d.ts +2 -2
- package/dist/{templates-DsP51i-S.js → templates-Pbxjdqlh.js} +5 -22
- package/dist/types/auto-group.d.ts +0 -7
- package/dist/types/componentWorkflowTypes.d.ts +0 -22
- package/dist/types/components.d.ts +1 -1
- package/dist/types/generated-ui.d.ts +2 -11
- package/dist/types/index.d.ts +4 -4
- package/dist/types/index.js +1 -1
- package/dist/types/jobs.d.ts +3 -11
- package/dist/{useApi-J6zFkHmn.js → useApi-yE0re8k-.js} +0 -14
- package/dist/{useControlSchema-BDx2Olha.js → useControlSchema-Ds4VeFxt.js} +8 -96
- package/dist/{useDropdownState-DSb3BC3N.js → useDropdownState-WIGW6Rr-.js} +0 -2
- package/dist/{useExperimentSelector-CV4iNfMS.js → useExperimentSelector-DXqsZuSk.js} +1 -3
- package/dist/{useFormBuilder-BLxG3BOX.js → useFormBuilder-1so6QSQL.js} +1 -3
- package/dist/{useProtocolTemplates-CS_SQl6U.js → useProtocolTemplates-Cv0ca1AM.js} +32 -478
- package/package.json +2 -8
- package/dist/EmptyState-p90quq8Z.js.map +0 -1
- package/dist/ExperimentPopover-tLwJ7XF4.js.map +0 -1
- package/dist/ExperimentSelectorModal-DyPAUCLw.js.map +0 -1
- package/dist/SettingsModal-BgKY93zh.js.map +0 -1
- package/dist/__stories__/experiment-helpers.d.ts +0 -28
- package/dist/__tests__/components/ActionItem.test.d.ts +0 -1
- package/dist/__tests__/components/ActionMenu.test.d.ts +0 -1
- package/dist/__tests__/components/AppAvatarMenu.test.d.ts +0 -1
- package/dist/__tests__/components/AppLayout.test.d.ts +0 -1
- package/dist/__tests__/components/AppPluginSwitcher.test.d.ts +0 -1
- package/dist/__tests__/components/AppSidebar.test.d.ts +0 -1
- package/dist/__tests__/components/AppToastContainer.test.d.ts +0 -1
- package/dist/__tests__/components/AppTopBar.navigation.test.d.ts +0 -1
- package/dist/__tests__/components/AppTopBar.test.d.ts +0 -1
- package/dist/__tests__/components/AppTopBarPageSelector.test.d.ts +0 -1
- package/dist/__tests__/components/AppTopBarPillNav.test.d.ts +0 -1
- package/dist/__tests__/components/AppTopBarPresence.test.d.ts +0 -1
- package/dist/__tests__/components/ArtifactSaveDialog.test.d.ts +0 -1
- package/dist/__tests__/components/ArtifactSelectorModal.test.d.ts +0 -1
- package/dist/__tests__/components/AutoGroupModal.adapter.test.d.ts +0 -1
- package/dist/__tests__/components/BaseInput.test.d.ts +0 -1
- package/dist/__tests__/components/BaseModal.test.d.ts +0 -1
- package/dist/__tests__/components/BasePill.test.d.ts +0 -1
- package/dist/__tests__/components/BaseRadioGroup.test.d.ts +0 -1
- package/dist/__tests__/components/BaseSelect.test.d.ts +0 -1
- package/dist/__tests__/components/BaseTabs.test.d.ts +0 -1
- package/dist/__tests__/components/BaseToggle.test.d.ts +0 -1
- package/dist/__tests__/components/BatchProgressList.test.d.ts +0 -1
- package/dist/__tests__/components/BioTemplateExperimentWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/BioTemplatePackWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/BioTemplatePresetWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/BioTemplateRenderer.test.d.ts +0 -1
- package/dist/__tests__/components/Breadcrumb.test.d.ts +0 -1
- package/dist/__tests__/components/Calendar.test.d.ts +0 -1
- package/dist/__tests__/components/CalendarGridPanel.test.d.ts +0 -1
- package/dist/__tests__/components/CollapsibleCard.test.d.ts +0 -1
- package/dist/__tests__/components/ComponentBindingRenderer.test.d.ts +0 -1
- package/dist/__tests__/components/ConcentrationInput.test.d.ts +0 -1
- package/dist/__tests__/components/ControlWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/DataFrame.test.d.ts +0 -1
- package/dist/__tests__/components/DatePicker.test.d.ts +0 -1
- package/dist/__tests__/components/DateTimePicker.test.d.ts +0 -1
- package/dist/__tests__/components/DoseCalculatorVolumeField.test.d.ts +0 -1
- package/dist/__tests__/components/DoseDesignWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/DropdownButton.test.d.ts +0 -1
- package/dist/__tests__/components/EmptyState.test.d.ts +0 -1
- package/dist/__tests__/components/ExperimentPopover.test.d.ts +0 -1
- package/dist/__tests__/components/ExperimentSelectorModal.test.d.ts +0 -1
- package/dist/__tests__/components/FormBuilder.test.d.ts +0 -1
- package/dist/__tests__/components/GeneratedPathInput.test.d.ts +0 -1
- package/dist/__tests__/components/GeneratedPlotlyResult.test.d.ts +0 -1
- package/dist/__tests__/components/GeneratedPluginView.test.d.ts +0 -1
- package/dist/__tests__/components/GeneratedResultRenderer.test.d.ts +0 -1
- package/dist/__tests__/components/GroupAssigner.test.d.ts +0 -1
- package/dist/__tests__/components/InstrumentAlertLog.test.d.ts +0 -1
- package/dist/__tests__/components/JobsStatusTray.test.d.ts +0 -1
- package/dist/__tests__/components/LcmsSequenceTable.test.d.ts +0 -1
- package/dist/__tests__/components/MobileSupportGate.test.d.ts +0 -1
- package/dist/__tests__/components/MultiSelect.test.d.ts +0 -1
- package/dist/__tests__/components/PlateMapEditorToolbarInternal.test.d.ts +0 -1
- package/dist/__tests__/components/PluginIcon.test.d.ts +0 -1
- package/dist/__tests__/components/PluginWorkspaceView.controls.test.d.ts +0 -1
- package/dist/__tests__/components/PluginWorkspaceView.navigation.test.d.ts +0 -1
- package/dist/__tests__/components/PluginWorkspaceView.shell.test.d.ts +0 -1
- package/dist/__tests__/components/PluginWorkspaceView.test.d.ts +0 -1
- package/dist/__tests__/components/ProgressBar.test.d.ts +0 -1
- package/dist/__tests__/components/ProtocolStep.presentation.test.d.ts +0 -1
- package/dist/__tests__/components/ProtocolStepEditor.state.test.d.ts +0 -1
- package/dist/__tests__/components/ProtocolStepEditor.test.d.ts +0 -1
- package/dist/__tests__/components/ProtocolStepParameterField.test.d.ts +0 -1
- package/dist/__tests__/components/RackEditor.test.d.ts +0 -1
- package/dist/__tests__/components/ReagentList.presentation.test.d.ts +0 -1
- package/dist/__tests__/components/ReagentList.test.d.ts +0 -1
- package/dist/__tests__/components/RetiredStyles.test.d.ts +0 -1
- package/dist/__tests__/components/RuntimeUpdateNotice.test.d.ts +0 -1
- package/dist/__tests__/components/SampleHierarchyTree.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelector.colors.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelector.drag.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelector.groups.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelector.selection.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelector.test.d.ts +0 -1
- package/dist/__tests__/components/SampleSelectorSampleRow.test.d.ts +0 -1
- package/dist/__tests__/components/ScheduleCalendar.test.d.ts +0 -1
- package/dist/__tests__/components/SectionCard.test.d.ts +0 -1
- package/dist/__tests__/components/SegmentedControl.test.d.ts +0 -1
- package/dist/__tests__/components/SequenceProgressBar.test.d.ts +0 -1
- package/dist/__tests__/components/SettingsModal.schema.test.d.ts +0 -1
- package/dist/__tests__/components/SettingsModal.test.d.ts +0 -1
- package/dist/__tests__/components/SmartGroupFieldRecipe.groups.test.d.ts +0 -1
- package/dist/__tests__/components/SmartGroupManual.cohorts.test.d.ts +0 -1
- package/dist/__tests__/components/TagsInput.test.d.ts +0 -1
- package/dist/__tests__/components/ThemeToggle.test.d.ts +0 -1
- package/dist/__tests__/components/TimePicker.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.colors.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.conditions.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.geometry.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.interaction.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.legend.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.rendering.test.d.ts +0 -1
- package/dist/__tests__/components/WellPlate.sampleDrop.test.d.ts +0 -1
- package/dist/__tests__/composables/analysisArtifactTarget.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/classKey.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/classify.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/columns.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/compose.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/cooccurrence.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/fingerprint.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/groupByOrder.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/groupTree.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/integration.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/template.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/tokenLength.test.d.ts +0 -1
- package/dist/__tests__/composables/autoGroup/tokenize.test.d.ts +0 -1
- package/dist/__tests__/composables/experiment-utils.test.d.ts +0 -1
- package/dist/__tests__/composables/formBuilderRegistry.test.d.ts +0 -1
- package/dist/__tests__/composables/resolvePluginFrontendBase.test.d.ts +0 -1
- package/dist/__tests__/composables/useAnalysisArtifacts.test.d.ts +0 -1
- package/dist/__tests__/composables/useApi.test.d.ts +0 -1
- package/dist/__tests__/composables/useAppExperiment.test.d.ts +0 -1
- package/dist/__tests__/composables/useAuth.test.d.ts +0 -1
- package/dist/__tests__/composables/useAutoGroup.test.d.ts +0 -1
- package/dist/__tests__/composables/useAutoGroupInputSources.test.d.ts +0 -1
- package/dist/__tests__/composables/useBioTemplatePackWorkspace.test.d.ts +0 -1
- package/dist/__tests__/composables/useBioTemplatePresetWorkspace.test.d.ts +0 -1
- package/dist/__tests__/composables/useBioTemplateWorkspace.test.d.ts +0 -1
- package/dist/__tests__/composables/useCalendarGrid.test.d.ts +0 -1
- package/dist/__tests__/composables/useCommandHistory.test.d.ts +0 -1
- package/dist/__tests__/composables/useControlSchema.test.d.ts +0 -1
- package/dist/__tests__/composables/useDebouncedWatch.test.d.ts +0 -1
- package/dist/__tests__/composables/useDropdownState.test.d.ts +0 -1
- package/dist/__tests__/composables/useEventListener.test.d.ts +0 -1
- package/dist/__tests__/composables/useEventStream.test.d.ts +0 -1
- package/dist/__tests__/composables/useExpansionSet.test.d.ts +0 -1
- package/dist/__tests__/composables/useExperimentData.test.d.ts +0 -14
- package/dist/__tests__/composables/useExperimentSamples.test.d.ts +0 -1
- package/dist/__tests__/composables/useExperimentSave.test.d.ts +0 -1
- package/dist/__tests__/composables/useExperimentSelector.test.d.ts +0 -1
- package/dist/__tests__/composables/useFileImport.test.d.ts +0 -1
- package/dist/__tests__/composables/useForm.test.d.ts +0 -1
- package/dist/__tests__/composables/useFormBuilder.test.d.ts +0 -1
- package/dist/__tests__/composables/useGeneratedAnalysis.test.d.ts +0 -1
- package/dist/__tests__/composables/useGroupAssignment.test.d.ts +0 -1
- package/dist/__tests__/composables/useJobsStatusTray.test.d.ts +0 -1
- package/dist/__tests__/composables/useListSelection.test.d.ts +0 -1
- package/dist/__tests__/composables/useMobileSupportGate.test.d.ts +0 -1
- package/dist/__tests__/composables/useOptimisticMutation.test.d.ts +0 -1
- package/dist/__tests__/composables/usePlatformContext.test.d.ts +0 -1
- package/dist/__tests__/composables/usePluginClient.test.d.ts +0 -1
- package/dist/__tests__/composables/usePresenceHeartbeat.test.d.ts +0 -1
- package/dist/__tests__/composables/useProtocolTemplates.test.d.ts +0 -1
- package/dist/__tests__/composables/useRequestSyncState.test.d.ts +0 -1
- package/dist/__tests__/composables/useResourceCrud.test.d.ts +0 -1
- package/dist/__tests__/composables/useRuntimeAlignment.test.d.ts +0 -1
- package/dist/__tests__/composables/useSampleGroups.test.d.ts +0 -1
- package/dist/__tests__/composables/useSampleGroups.tree.test.d.ts +0 -1
- package/dist/__tests__/composables/useScheduleCalendarLayout.test.d.ts +0 -1
- package/dist/__tests__/composables/useSelectionLimit.test.d.ts +0 -1
- package/dist/__tests__/composables/useSortedItems.test.d.ts +0 -1
- package/dist/__tests__/composables/useTemplateCollection.test.d.ts +0 -1
- package/dist/__tests__/composables/useTextSearch.test.d.ts +0 -1
- package/dist/__tests__/composables/useTheme.test.d.ts +0 -1
- package/dist/__tests__/composables/useTimeUtils.test.d.ts +0 -1
- package/dist/__tests__/composables/useWellPainting.test.d.ts +0 -1
- package/dist/__tests__/composables/useWellPlateAdapter.test.d.ts +0 -1
- package/dist/__tests__/composables/useWellPlateValidation.test.d.ts +0 -1
- package/dist/__tests__/docs/extractDocsComponents.test.d.ts +0 -1
- package/dist/__tests__/docs/extractDocsExports.test.d.ts +0 -1
- package/dist/__tests__/docs/extractDocsParsing.test.d.ts +0 -1
- package/dist/__tests__/docs/extractDocsTemplates.test.d.ts +0 -1
- package/dist/__tests__/docs/extractDocsTheme.test.d.ts +0 -1
- package/dist/__tests__/docs/frontendDocsCatalog.test.d.ts +0 -1
- package/dist/__tests__/generatedUi.test.d.ts +0 -1
- package/dist/__tests__/stores/experiment.test.d.ts +0 -1
- package/dist/__tests__/stores/settings.test.d.ts +0 -1
- package/dist/__tests__/templates/templates.test.d.ts +0 -1
- package/dist/__tests__/types/GeneratedJsonSchema.test.d.ts +0 -1
- package/dist/__tests__/utils/color.test.d.ts +0 -1
- package/dist/__tests__/utils/instrument.test.d.ts +0 -1
- package/dist/__tests__/utils/jobs.test.d.ts +0 -1
- package/dist/__tests__/utils/lcms.test.d.ts +0 -1
- package/dist/__tests__/utils/permissions.test.d.ts +0 -1
- package/dist/__tests__/utils/rack.test.d.ts +0 -1
- package/dist/analysisArtifactTypes-DQ0MjwHZ.js.map +0 -1
- package/dist/chunk-BoAXSpZd.js +0 -33
- package/dist/components/AuditTrail.vue.d.ts +0 -38
- package/dist/components/ColorSlider.vue.d.ts +0 -34
- package/dist/components/DoseDesignWorkspaceView.vue.d.ts +0 -149
- package/dist/components/FitPanel.vue.d.ts +0 -46
- package/dist/components/GroupAssigner.vue.d.ts +0 -25
- package/dist/components/RackEditor.vue.d.ts +0 -78
- package/dist/components/ReagentEditor.vue.d.ts +0 -30
- package/dist/components/ResourceCard.vue.d.ts +0 -50
- package/dist/components/ScientificNumber.vue.d.ts +0 -14
- package/dist/components-DkHddRMl.js.map +0 -1
- package/dist/composables/autoGroupConstants.d.ts +0 -1
- package/dist/composables/autoGroupGrouping.d.ts +0 -3
- package/dist/composables/useAsync.d.ts +0 -128
- package/dist/composables/useAutoGroupInputSources.d.ts +0 -32
- package/dist/composables/useCommandHistory.d.ts +0 -29
- package/dist/composables/useGroupAssignment.d.ts +0 -31
- package/dist/composables/useRackEditor.d.ts +0 -31
- package/dist/composables/useResourceCrud.d.ts +0 -40
- package/dist/composables/useWellPainting.d.ts +0 -35
- package/dist/composables/useWellPlateAdapter.d.ts +0 -36
- package/dist/composables-C_i90sGS.js.map +0 -1
- package/dist/experiment-Cq145oEW.js.map +0 -1
- package/dist/experiment-utils-CLnzPPq5.js.map +0 -1
- package/dist/histoire.setup.d.ts +0 -1
- package/dist/index.js.map +0 -1
- package/dist/install.js +0 -28
- package/dist/install.js.map +0 -1
- package/dist/permissions.js.map +0 -1
- package/dist/plotly.min-c2Sez60c.js +0 -180634
- package/dist/plotly.min-c2Sez60c.js.map +0 -1
- package/dist/tailwind.preset.js.map +0 -1
- package/dist/templates-DsP51i-S.js.map +0 -1
- package/dist/useApi-J6zFkHmn.js.map +0 -1
- package/dist/useControlSchema-BDx2Olha.js.map +0 -1
- package/dist/useDropdownState-DSb3BC3N.js.map +0 -1
- package/dist/useExperimentSelector-CV4iNfMS.js.map +0 -1
- package/dist/useFormBuilder-BLxG3BOX.js.map +0 -1
- package/dist/useProtocolTemplates-CS_SQl6U.js.map +0 -1
- package/src/__stories__/experiment-helpers.ts +0 -86
- package/src/__tests__/components/ActionItem.test.ts +0 -99
- package/src/__tests__/components/ActionMenu.test.ts +0 -120
- package/src/__tests__/components/AppAvatarMenu.test.ts +0 -38
- package/src/__tests__/components/AppLayout.test.ts +0 -207
- package/src/__tests__/components/AppPluginSwitcher.test.ts +0 -44
- package/src/__tests__/components/AppSidebar.test.ts +0 -857
- package/src/__tests__/components/AppToastContainer.test.ts +0 -37
- package/src/__tests__/components/AppTopBar.navigation.test.ts +0 -68
- package/src/__tests__/components/AppTopBar.test.ts +0 -1256
- package/src/__tests__/components/AppTopBarPageSelector.test.ts +0 -156
- package/src/__tests__/components/AppTopBarPillNav.test.ts +0 -125
- package/src/__tests__/components/AppTopBarPresence.test.ts +0 -47
- package/src/__tests__/components/ArtifactSaveDialog.test.ts +0 -566
- package/src/__tests__/components/ArtifactSelectorModal.test.ts +0 -178
- package/src/__tests__/components/AutoGroupModal.adapter.test.ts +0 -204
- package/src/__tests__/components/BaseInput.test.ts +0 -99
- package/src/__tests__/components/BaseModal.test.ts +0 -133
- package/src/__tests__/components/BasePill.test.ts +0 -291
- package/src/__tests__/components/BaseRadioGroup.test.ts +0 -25
- package/src/__tests__/components/BaseSelect.test.ts +0 -73
- package/src/__tests__/components/BaseTabs.test.ts +0 -40
- package/src/__tests__/components/BaseToggle.test.ts +0 -40
- package/src/__tests__/components/BatchProgressList.test.ts +0 -52
- package/src/__tests__/components/BioTemplateExperimentWorkspaceView.test.ts +0 -159
- package/src/__tests__/components/BioTemplatePackWorkspaceView.test.ts +0 -192
- package/src/__tests__/components/BioTemplatePresetWorkspaceView.test.ts +0 -328
- package/src/__tests__/components/BioTemplateRenderer.test.ts +0 -96
- package/src/__tests__/components/Breadcrumb.test.ts +0 -23
- package/src/__tests__/components/Calendar.test.ts +0 -566
- package/src/__tests__/components/CalendarGridPanel.test.ts +0 -36
- package/src/__tests__/components/CollapsibleCard.test.ts +0 -571
- package/src/__tests__/components/ComponentBindingRenderer.test.ts +0 -278
- package/src/__tests__/components/ConcentrationInput.test.ts +0 -45
- package/src/__tests__/components/ControlWorkspaceView.test.ts +0 -1102
- package/src/__tests__/components/DataFrame.test.ts +0 -915
- package/src/__tests__/components/DatePicker.test.ts +0 -45
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name,
|
|
77
|
-
label: schema.title || humanize(name),
|
|
78
|
-
type: fieldType(schema, reference),
|
|
79
|
-
defaultValue: resolved.hasDefault ? structuredClone(resolved.defaultValue) : undefined,
|
|
80
|
-
hint: schema.description,
|
|
81
|
-
validation,
|
|
82
|
-
props,
|
|
83
|
-
}
|
|
84
|
-
}
|
|
85
|
-
|
|
86
|
-
function resolveGeneratedField(
|
|
87
|
-
root: GeneratedJsonSchema,
|
|
88
|
-
field: GeneratedJsonSchema,
|
|
89
|
-
): ResolvedGeneratedField {
|
|
90
|
-
const hasDefault = hasOwnDefault(field)
|
|
91
|
-
const candidate = field.anyOf?.find(item => item.type !== 'null')
|
|
92
|
-
?? field.allOf?.[0]
|
|
93
|
-
?? field
|
|
94
|
-
if (candidate.$ref) {
|
|
95
|
-
const referenceParts = candidate.$ref.split('/')
|
|
96
|
-
const key = referenceParts[referenceParts.length - 1]
|
|
97
|
-
const schema = key ? root.$defs?.[key] : undefined
|
|
98
|
-
if (!schema) throw new Error(`Generated field reference is missing: ${candidate.$ref}`)
|
|
99
|
-
return {
|
|
100
|
-
schema: { ...schema, title: field.title ?? schema.title },
|
|
101
|
-
reference: field['x-mint-component'] ?? schema['x-mint-component'],
|
|
102
|
-
hasDefault,
|
|
103
|
-
defaultValue: field.default,
|
|
104
|
-
}
|
|
105
|
-
}
|
|
106
|
-
return {
|
|
107
|
-
schema: candidate,
|
|
108
|
-
reference: field['x-mint-component'] ?? candidate['x-mint-component'],
|
|
109
|
-
hasDefault,
|
|
110
|
-
defaultValue: field.default,
|
|
111
|
-
}
|
|
112
|
-
}
|
|
113
|
-
|
|
114
|
-
function fieldType(schema: GeneratedJsonSchema, reference?: GeneratedReference): FormFieldType {
|
|
115
|
-
if (reference === 'path') return 'path'
|
|
116
|
-
if (schema.enum) return 'select'
|
|
117
|
-
const type = Array.isArray(schema.type) ? schema.type.find(value => value !== 'null') : schema.type
|
|
118
|
-
if (type === 'boolean') return 'toggle'
|
|
119
|
-
if (type === 'number' || type === 'integer') return 'number'
|
|
120
|
-
if (type === 'array') return 'tags'
|
|
121
|
-
return 'text'
|
|
122
|
-
}
|
|
123
|
-
|
|
124
|
-
function hasOwnDefault(schema: GeneratedJsonSchema): boolean {
|
|
125
|
-
return Object.prototype.hasOwnProperty.call(schema, 'default')
|
|
126
|
-
}
|
|
127
|
-
|
|
128
|
-
function humanize(value: string): string {
|
|
129
|
-
return value.replace(/[_-]+/g, ' ').replace(/^\w/, character => character.toUpperCase())
|
|
130
|
-
}
|
package/src/generated-ui/main.ts
DELETED
|
@@ -1,21 +0,0 @@
|
|
|
1
|
-
import { createPinia } from 'pinia'
|
|
2
|
-
import { createApp, h } from 'vue'
|
|
3
|
-
|
|
4
|
-
import GeneratedPluginView from '../components/GeneratedPluginView.vue'
|
|
5
|
-
import '../styles/index.css'
|
|
6
|
-
|
|
7
|
-
function generatedApiBase(location: Location): string {
|
|
8
|
-
const pluginPath = new URL('.', location.href).pathname.replace(/\/$/, '')
|
|
9
|
-
return `/api${pluginPath}`
|
|
10
|
-
}
|
|
11
|
-
|
|
12
|
-
const app = createApp({
|
|
13
|
-
name: 'MintGeneratedUiApp',
|
|
14
|
-
render: () => h(GeneratedPluginView, {
|
|
15
|
-
baseUrl: generatedApiBase(window.location),
|
|
16
|
-
showStandaloneLabel: true,
|
|
17
|
-
}),
|
|
18
|
-
})
|
|
19
|
-
|
|
20
|
-
app.use(createPinia())
|
|
21
|
-
app.mount('#app')
|
package/src/histoire.setup.ts
DELETED
|
@@ -1,17 +0,0 @@
|
|
|
1
|
-
import { defineSetupVue3 } from '@histoire/plugin-vue'
|
|
2
|
-
import { createPinia } from 'pinia'
|
|
3
|
-
import './styles/index.css'
|
|
4
|
-
|
|
5
|
-
export const setupVue3 = defineSetupVue3(({ app }) => {
|
|
6
|
-
app.use(createPinia())
|
|
7
|
-
|
|
8
|
-
// Sync Histoire dark mode toggle to html.dark class (drives CSS variables)
|
|
9
|
-
if (typeof window !== 'undefined' && typeof window.matchMedia === 'function') {
|
|
10
|
-
const mq = window.matchMedia('(prefers-color-scheme: dark)')
|
|
11
|
-
const sync = (dark: boolean) => {
|
|
12
|
-
document.documentElement.classList.toggle('dark', dark)
|
|
13
|
-
}
|
|
14
|
-
sync(mq.matches)
|
|
15
|
-
mq.addEventListener('change', (e) => sync(e.matches))
|
|
16
|
-
}
|
|
17
|
-
})
|
package/src/index.ts
DELETED
|
@@ -1,67 +0,0 @@
|
|
|
1
|
-
// Styles (import to ensure bundling)
|
|
2
|
-
import './styles/index.css'
|
|
3
|
-
|
|
4
|
-
// Vue Plugin for global component registration
|
|
5
|
-
export { MINTSdk, default } from './install'
|
|
6
|
-
|
|
7
|
-
// Components
|
|
8
|
-
export * from './components'
|
|
9
|
-
|
|
10
|
-
// Composables
|
|
11
|
-
export * from './composables'
|
|
12
|
-
// Resolve names shared by composables and templates so root exports stay unambiguous.
|
|
13
|
-
export {
|
|
14
|
-
getBioTemplateComponentProps,
|
|
15
|
-
toBioTemplateComponentPropsByComponent,
|
|
16
|
-
type ControlDefinition,
|
|
17
|
-
} from './composables'
|
|
18
|
-
|
|
19
|
-
// Stores
|
|
20
|
-
export * from './stores'
|
|
21
|
-
|
|
22
|
-
// Permissions
|
|
23
|
-
export * from './permissions'
|
|
24
|
-
|
|
25
|
-
// Instrument monitoring
|
|
26
|
-
export * from './instrument'
|
|
27
|
-
|
|
28
|
-
// Job state helpers
|
|
29
|
-
export * from './jobs'
|
|
30
|
-
|
|
31
|
-
// Experimental generated analysis workspace
|
|
32
|
-
export * from './generated/schema'
|
|
33
|
-
|
|
34
|
-
// LCMS sequence helpers
|
|
35
|
-
export * from './lcms'
|
|
36
|
-
|
|
37
|
-
// Utils
|
|
38
|
-
export {
|
|
39
|
-
hexToHsl,
|
|
40
|
-
hslToHex,
|
|
41
|
-
deriveShade,
|
|
42
|
-
type Hsl,
|
|
43
|
-
} from './utils/color'
|
|
44
|
-
export {
|
|
45
|
-
LCMS_DEFAULT_CONTROL_POSITIONS,
|
|
46
|
-
createLcmsControlWellEditData,
|
|
47
|
-
getLcmsDefaultControlWellId,
|
|
48
|
-
lcmsPlateCellsToRack,
|
|
49
|
-
lcmsPlateCellsToRacks,
|
|
50
|
-
lcmsPlateTypeToRackFormat,
|
|
51
|
-
lcmsWellId,
|
|
52
|
-
parseLcmsWellId,
|
|
53
|
-
rackFormatToLcmsPlateType,
|
|
54
|
-
rackToLcmsPlateCells,
|
|
55
|
-
racksToLcmsPlateCells,
|
|
56
|
-
type LcmsControlSampleType,
|
|
57
|
-
type LcmsPlateCell,
|
|
58
|
-
type LcmsPlateCellsToRackOptions,
|
|
59
|
-
type LcmsPlateCellsToRacksOptions,
|
|
60
|
-
type LcmsPlateType,
|
|
61
|
-
} from './utils/rack'
|
|
62
|
-
|
|
63
|
-
// Biology data templates
|
|
64
|
-
export * from './templates'
|
|
65
|
-
|
|
66
|
-
// Types
|
|
67
|
-
export type * from './types'
|
package/src/install.ts
DELETED
|
@@ -1,39 +0,0 @@
|
|
|
1
|
-
import * as components from './components'
|
|
2
|
-
|
|
3
|
-
type ComponentRegistryApp = {
|
|
4
|
-
component: (name: string, component: any) => unknown
|
|
5
|
-
}
|
|
6
|
-
|
|
7
|
-
export interface MINTSdkPlugin {
|
|
8
|
-
install(app: ComponentRegistryApp): void
|
|
9
|
-
}
|
|
10
|
-
|
|
11
|
-
/**
|
|
12
|
-
* Vue plugin that registers all MINT SDK components globally.
|
|
13
|
-
*
|
|
14
|
-
* @example
|
|
15
|
-
* ```typescript
|
|
16
|
-
* import { createApp } from 'vue'
|
|
17
|
-
* import { MINTSdk } from '@morscherlab/mint-sdk'
|
|
18
|
-
* import '@morscherlab/mint-sdk/styles'
|
|
19
|
-
*
|
|
20
|
-
* const app = createApp(App)
|
|
21
|
-
* app.use(MINTSdk)
|
|
22
|
-
* ```
|
|
23
|
-
*/
|
|
24
|
-
export const MINTSdk: MINTSdkPlugin = {
|
|
25
|
-
install(app) {
|
|
26
|
-
for (const [name, component] of Object.entries(components)) {
|
|
27
|
-
// Check if it's a valid Vue component (has setup, render, or template)
|
|
28
|
-
if (
|
|
29
|
-
component &&
|
|
30
|
-
typeof component === 'object' &&
|
|
31
|
-
('setup' in component || 'render' in component || '__name' in component)
|
|
32
|
-
) {
|
|
33
|
-
app.component(name, component)
|
|
34
|
-
}
|
|
35
|
-
}
|
|
36
|
-
},
|
|
37
|
-
}
|
|
38
|
-
|
|
39
|
-
export default MINTSdk
|
package/src/instrument.ts
DELETED
|
@@ -1,90 +0,0 @@
|
|
|
1
|
-
import type { SequenceProgress } from './types'
|
|
2
|
-
|
|
3
|
-
export function sequenceProgressPercent(progress: SequenceProgress | null | undefined): number {
|
|
4
|
-
if (!progress || progress.total_samples <= 0) return 0
|
|
5
|
-
return Math.round(clamp((progress.current_sample / progress.total_samples) * 100, 0, 100))
|
|
6
|
-
}
|
|
7
|
-
|
|
8
|
-
export function sequenceSamplesRemaining(progress: SequenceProgress | null | undefined): number {
|
|
9
|
-
if (!progress) return 0
|
|
10
|
-
return Math.max(0, progress.total_samples - progress.current_sample)
|
|
11
|
-
}
|
|
12
|
-
|
|
13
|
-
export function estimateSequenceRemainingSeconds(
|
|
14
|
-
progress: SequenceProgress | null | undefined,
|
|
15
|
-
): number | null {
|
|
16
|
-
if (!progress) return null
|
|
17
|
-
const samplesLeft = sequenceSamplesRemaining(progress)
|
|
18
|
-
if (samplesLeft <= 0) return 0
|
|
19
|
-
|
|
20
|
-
const explicit = progress.estimated_remaining_seconds
|
|
21
|
-
if (typeof explicit === 'number' && explicit > 0) return explicit
|
|
22
|
-
|
|
23
|
-
const avg = progress.avg_sample_seconds ?? average(progress.sample_durations)
|
|
24
|
-
if (typeof avg === 'number' && avg > 0) return samplesLeft * avg
|
|
25
|
-
|
|
26
|
-
const elapsed = progress.elapsed_seconds ?? 0
|
|
27
|
-
if (elapsed > 0 && progress.current_sample > 0) {
|
|
28
|
-
return (elapsed / progress.current_sample) * samplesLeft
|
|
29
|
-
}
|
|
30
|
-
|
|
31
|
-
return null
|
|
32
|
-
}
|
|
33
|
-
|
|
34
|
-
export function estimateSequenceFinishDate(
|
|
35
|
-
progress: SequenceProgress | null | undefined,
|
|
36
|
-
now = new Date(),
|
|
37
|
-
): Date | null {
|
|
38
|
-
if (!progress) return null
|
|
39
|
-
|
|
40
|
-
const explicit = coerceDate(progress.estimated_finish_time)
|
|
41
|
-
if (explicit) return explicit
|
|
42
|
-
|
|
43
|
-
const remaining = estimateSequenceRemainingSeconds(progress)
|
|
44
|
-
if (remaining == null || remaining <= 0) return null
|
|
45
|
-
return new Date(now.getTime() + remaining * 1000)
|
|
46
|
-
}
|
|
47
|
-
|
|
48
|
-
export function formatSequenceRemaining(progress: SequenceProgress | null | undefined): string | null {
|
|
49
|
-
const remaining = estimateSequenceRemainingSeconds(progress)
|
|
50
|
-
if (remaining == null || remaining <= 0) return null
|
|
51
|
-
|
|
52
|
-
const minutes = remaining / 60
|
|
53
|
-
if (minutes < 1) return `${Math.round(remaining)}s left`
|
|
54
|
-
if (minutes < 60) return `~${Math.round(minutes)}m left`
|
|
55
|
-
|
|
56
|
-
const hours = Math.floor(minutes / 60)
|
|
57
|
-
const mins = Math.round(minutes % 60)
|
|
58
|
-
return mins > 0 ? `~${hours}h ${mins}m left` : `~${hours}h left`
|
|
59
|
-
}
|
|
60
|
-
|
|
61
|
-
export function formatSequenceEta(
|
|
62
|
-
progress: SequenceProgress | null | undefined,
|
|
63
|
-
locale?: Intl.LocalesArgument,
|
|
64
|
-
options: Intl.DateTimeFormatOptions = {},
|
|
65
|
-
): string | null {
|
|
66
|
-
const finish = estimateSequenceFinishDate(progress)
|
|
67
|
-
if (!finish) return null
|
|
68
|
-
return finish.toLocaleTimeString(locale, {
|
|
69
|
-
hour: '2-digit',
|
|
70
|
-
minute: '2-digit',
|
|
71
|
-
...options,
|
|
72
|
-
})
|
|
73
|
-
}
|
|
74
|
-
|
|
75
|
-
function average(values: readonly number[] | undefined): number | null {
|
|
76
|
-
if (!values?.length) return null
|
|
77
|
-
const usable = values.filter(value => Number.isFinite(value) && value >= 0)
|
|
78
|
-
if (usable.length === 0) return null
|
|
79
|
-
return usable.reduce((sum, value) => sum + value, 0) / usable.length
|
|
80
|
-
}
|
|
81
|
-
|
|
82
|
-
function coerceDate(value: string | Date | null | undefined): Date | null {
|
|
83
|
-
if (!value) return null
|
|
84
|
-
const date = value instanceof Date ? value : new Date(value)
|
|
85
|
-
return Number.isNaN(date.getTime()) ? null : date
|
|
86
|
-
}
|
|
87
|
-
|
|
88
|
-
function clamp(value: number, min: number, max: number): number {
|
|
89
|
-
return Math.min(max, Math.max(min, value))
|
|
90
|
-
}
|
package/src/jobs.ts
DELETED
|
@@ -1,80 +0,0 @@
|
|
|
1
|
-
import type { JobState, JobStateInput, JobStatus } from './types/jobs'
|
|
2
|
-
|
|
3
|
-
const ACTIVE_JOB_STATUSES = new Set<JobStatus>([
|
|
4
|
-
'awaiting_input',
|
|
5
|
-
'queued',
|
|
6
|
-
'running',
|
|
7
|
-
])
|
|
8
|
-
const TERMINAL_JOB_STATUSES = new Set<JobStatus>([
|
|
9
|
-
'completed',
|
|
10
|
-
'failed',
|
|
11
|
-
'cancelled',
|
|
12
|
-
])
|
|
13
|
-
|
|
14
|
-
export interface JobCapabilityInput {
|
|
15
|
-
status: string
|
|
16
|
-
can_cancel?: boolean | null
|
|
17
|
-
can_delete?: boolean | null
|
|
18
|
-
}
|
|
19
|
-
|
|
20
|
-
export interface JobCapabilities {
|
|
21
|
-
can_cancel: boolean
|
|
22
|
-
can_delete: boolean
|
|
23
|
-
}
|
|
24
|
-
|
|
25
|
-
/** Resolve action support while retaining one-cycle legacy status inference. */
|
|
26
|
-
export function resolveJobCapabilities(job: JobCapabilityInput): JobCapabilities {
|
|
27
|
-
const legacyCanCancel = job.status === 'queued' || job.status === 'running'
|
|
28
|
-
const legacyCanDelete = TERMINAL_JOB_STATUSES.has(job.status as JobStatus)
|
|
29
|
-
return {
|
|
30
|
-
can_cancel: typeof job.can_cancel === 'boolean' ? job.can_cancel : legacyCanCancel,
|
|
31
|
-
can_delete: typeof job.can_delete === 'boolean' ? job.can_delete : legacyCanDelete,
|
|
32
|
-
}
|
|
33
|
-
}
|
|
34
|
-
|
|
35
|
-
/** Clamp invalid or out-of-range progress values for safe display. */
|
|
36
|
-
export function normalizeJobPercent(value: number): number {
|
|
37
|
-
if (!Number.isFinite(value)) return 0
|
|
38
|
-
return Math.min(100, Math.max(0, value))
|
|
39
|
-
}
|
|
40
|
-
|
|
41
|
-
/** Create a detached canonical state without changing the transport input. */
|
|
42
|
-
export function normalizeJobState(job: JobStateInput): JobState {
|
|
43
|
-
const capabilities = resolveJobCapabilities(job)
|
|
44
|
-
return {
|
|
45
|
-
...job,
|
|
46
|
-
definition_id: job.definition_id
|
|
47
|
-
?? (typeof job.metadata.definition_id === 'string' ? job.metadata.definition_id : null),
|
|
48
|
-
result_status: job.result_status
|
|
49
|
-
?? (job.status === 'completed' && job.metadata.has_result === true ? 'available' : 'none'),
|
|
50
|
-
result_expires_at: job.result_expires_at ?? null,
|
|
51
|
-
progress: {
|
|
52
|
-
...job.progress,
|
|
53
|
-
percent: normalizeJobPercent(job.progress.percent),
|
|
54
|
-
},
|
|
55
|
-
warnings: [...job.warnings],
|
|
56
|
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folders: [...job.folders],
|
|
57
|
-
metadata: { ...job.metadata },
|
|
58
|
-
...capabilities,
|
|
59
|
-
}
|
|
60
|
-
}
|
|
61
|
-
|
|
62
|
-
export function isActiveJobStatus(status: JobStatus): boolean {
|
|
63
|
-
return ACTIVE_JOB_STATUSES.has(status)
|
|
64
|
-
}
|
|
65
|
-
|
|
66
|
-
export function isTerminalJobStatus(status: JobStatus): boolean {
|
|
67
|
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return TERMINAL_JOB_STATUSES.has(status)
|
|
68
|
-
}
|
|
69
|
-
|
|
70
|
-
export function jobStatusLabel(status: JobStatus): string {
|
|
71
|
-
const labels: Record<JobStatus, string> = {
|
|
72
|
-
awaiting_input: 'Waiting for input',
|
|
73
|
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queued: 'Queued',
|
|
74
|
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running: 'Running',
|
|
75
|
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completed: 'Completed',
|
|
76
|
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failed: 'Failed',
|
|
77
|
-
cancelled: 'Cancelled',
|
|
78
|
-
}
|
|
79
|
-
return labels[status]
|
|
80
|
-
}
|
package/src/lcms.ts
DELETED
|
@@ -1,108 +0,0 @@
|
|
|
1
|
-
import type { LcmsPlateCell, LcmsPlateType } from './utils/rack'
|
|
2
|
-
|
|
3
|
-
export type LcmsPolarity = 'POS' | 'NEG' | 'BOTH'
|
|
4
|
-
export type LcmsContainerType = 'VIAL' | 'PLATE'
|
|
5
|
-
|
|
6
|
-
export interface LcmsSequenceItem {
|
|
7
|
-
sample_type: string
|
|
8
|
-
file_name: string
|
|
9
|
-
sample_id: string
|
|
10
|
-
path: string
|
|
11
|
-
instrument_method: string
|
|
12
|
-
position: string
|
|
13
|
-
injection_volume: number
|
|
14
|
-
}
|
|
15
|
-
|
|
16
|
-
export interface LcmsSequenceTableColumn {
|
|
17
|
-
key: keyof LcmsSequenceItem | 'index' | 'actions'
|
|
18
|
-
label: string
|
|
19
|
-
align?: 'left' | 'right'
|
|
20
|
-
}
|
|
21
|
-
|
|
22
|
-
export const DEFAULT_LCMS_SEQUENCE_COLUMNS: LcmsSequenceTableColumn[] = [
|
|
23
|
-
{ key: 'index', label: '#' },
|
|
24
|
-
{ key: 'sample_type', label: 'Type' },
|
|
25
|
-
{ key: 'file_name', label: 'File Name' },
|
|
26
|
-
{ key: 'position', label: 'Position' },
|
|
27
|
-
{ key: 'instrument_method', label: 'Method' },
|
|
28
|
-
{ key: 'injection_volume', label: 'Inj Vol', align: 'right' },
|
|
29
|
-
]
|
|
30
|
-
|
|
31
|
-
export function extractLcmsCommonPrefix(fileNames: readonly string[]): string {
|
|
32
|
-
if (fileNames.length === 0) return ''
|
|
33
|
-
const stripped = fileNames.map(fileName => fileName.replace(/_\d{3}$/, ''))
|
|
34
|
-
const prefixes = stripped.map((fileName) => {
|
|
35
|
-
const match = fileName.match(/^(.+?)_(POS|NEG)_/i)
|
|
36
|
-
return match ? match[1] : fileName.replace(/_[^_]+$/, '')
|
|
37
|
-
})
|
|
38
|
-
|
|
39
|
-
let common = prefixes[0] ?? ''
|
|
40
|
-
for (const prefix of prefixes.slice(1)) {
|
|
41
|
-
while (common && !prefix.startsWith(common)) {
|
|
42
|
-
const index = common.lastIndexOf('_')
|
|
43
|
-
common = index > 0 ? common.substring(0, index) : common.substring(0, common.length - 1)
|
|
44
|
-
}
|
|
45
|
-
}
|
|
46
|
-
return common
|
|
47
|
-
}
|
|
48
|
-
|
|
49
|
-
export function extractLcmsSampleName(fileName: string, prefix = ''): string {
|
|
50
|
-
let name = fileName.replace(/_\d{3}$/, '')
|
|
51
|
-
if (prefix && name.startsWith(prefix)) {
|
|
52
|
-
name = name.substring(prefix.length).replace(/^_+/, '')
|
|
53
|
-
}
|
|
54
|
-
name = name.replace(/^(POS|NEG)_/i, '')
|
|
55
|
-
return name || fileName
|
|
56
|
-
}
|
|
57
|
-
|
|
58
|
-
export function lcmsWellIdFromPosition(position: string): string {
|
|
59
|
-
return position.includes(':') ? position.split(':').pop() ?? position : position
|
|
60
|
-
}
|
|
61
|
-
|
|
62
|
-
export function inferLcmsPlateTypeFromWellIds(wellIds: readonly string[]): LcmsPlateType | null {
|
|
63
|
-
let maxCol = 0
|
|
64
|
-
let maxRow = 0
|
|
65
|
-
for (const wellId of wellIds) {
|
|
66
|
-
const match = wellId.match(/^([A-Z])(\d+)$/i)
|
|
67
|
-
if (!match) continue
|
|
68
|
-
maxRow = Math.max(maxRow, match[1].toUpperCase().charCodeAt(0) - 64)
|
|
69
|
-
maxCol = Math.max(maxCol, Number(match[2]))
|
|
70
|
-
}
|
|
71
|
-
if (maxCol === 0 && maxRow === 0) return null
|
|
72
|
-
return maxCol <= 9 && maxRow <= 6 ? '54vial' : '96well'
|
|
73
|
-
}
|
|
74
|
-
|
|
75
|
-
export function reconstructLcmsPlateCellsFromSequenceItems(
|
|
76
|
-
items: readonly LcmsSequenceItem[],
|
|
77
|
-
): { cells: LcmsPlateCell[]; plateType: LcmsPlateType } | null {
|
|
78
|
-
const unknownItems = items.filter(item => item.sample_type === 'Unknown')
|
|
79
|
-
if (unknownItems.length === 0) return null
|
|
80
|
-
|
|
81
|
-
const prefix = extractLcmsCommonPrefix(unknownItems.map(item => item.file_name))
|
|
82
|
-
const seen = new Set<string>()
|
|
83
|
-
const cells: LcmsPlateCell[] = []
|
|
84
|
-
|
|
85
|
-
for (const item of unknownItems) {
|
|
86
|
-
const wellId = lcmsWellIdFromPosition(item.position)
|
|
87
|
-
if (seen.has(wellId)) continue
|
|
88
|
-
seen.add(wellId)
|
|
89
|
-
|
|
90
|
-
const match = wellId.match(/^([A-Z])(\d+)$/i)
|
|
91
|
-
if (!match) continue
|
|
92
|
-
cells.push({
|
|
93
|
-
row: match[1].toUpperCase(),
|
|
94
|
-
column: Number(match[2]),
|
|
95
|
-
sample_name: extractLcmsSampleName(item.file_name, prefix),
|
|
96
|
-
})
|
|
97
|
-
}
|
|
98
|
-
|
|
99
|
-
if (cells.length === 0) return null
|
|
100
|
-
const plateType = inferLcmsPlateTypeFromWellIds(cells.map(cell => `${cell.row}${cell.column}`))
|
|
101
|
-
if (!plateType) return null
|
|
102
|
-
return { cells, plateType }
|
|
103
|
-
}
|
|
104
|
-
|
|
105
|
-
export function basenameFromWindowsPath(path: string | null | undefined): string {
|
|
106
|
-
if (!path) return ''
|
|
107
|
-
return path.split(/[\\/]/).pop() ?? path
|
|
108
|
-
}
|
package/src/permissions.ts
DELETED
|
@@ -1,144 +0,0 @@
|
|
|
1
|
-
export const ADMIN_ROLE = 'admin'
|
|
2
|
-
|
|
3
|
-
export const ADMIN_PANEL_PERMISSIONS = [
|
|
4
|
-
'users.view',
|
|
5
|
-
'users.invite',
|
|
6
|
-
'users.manage',
|
|
7
|
-
'platform.configure',
|
|
8
|
-
'platform.view_logs',
|
|
9
|
-
'plugins.configure',
|
|
10
|
-
'plugins.install',
|
|
11
|
-
'notices.publish',
|
|
12
|
-
] as const
|
|
13
|
-
|
|
14
|
-
export type AccessAudience = 'all' | 'admin' | 'user'
|
|
15
|
-
export type AccessAudienceInput = AccessAudience | readonly AccessAudience[]
|
|
16
|
-
|
|
17
|
-
export interface RoleInfo {
|
|
18
|
-
id?: number
|
|
19
|
-
slug: string
|
|
20
|
-
name?: string
|
|
21
|
-
color?: string
|
|
22
|
-
permissions?: readonly string[] | null
|
|
23
|
-
project_scope?: 'all' | 'assigned' | string
|
|
24
|
-
plugin_access?: readonly string[] | 'all' | null
|
|
25
|
-
}
|
|
26
|
-
|
|
27
|
-
export interface PermissionUser {
|
|
28
|
-
role?: string | null
|
|
29
|
-
role_obj?: RoleInfo | null
|
|
30
|
-
roleObj?: RoleInfo | null
|
|
31
|
-
permissions?: readonly string[] | null
|
|
32
|
-
}
|
|
33
|
-
|
|
34
|
-
export interface AccessPolicy {
|
|
35
|
-
audience?: AccessAudienceInput
|
|
36
|
-
visibleFor?: AccessAudienceInput
|
|
37
|
-
requiresAuth?: boolean
|
|
38
|
-
requiresAdmin?: boolean
|
|
39
|
-
permissions?: readonly string[]
|
|
40
|
-
anyPermissions?: readonly string[]
|
|
41
|
-
plugin?: string
|
|
42
|
-
}
|
|
43
|
-
|
|
44
|
-
export interface AccessControlled {
|
|
45
|
-
access?: AccessPolicy
|
|
46
|
-
visibleFor?: AccessAudienceInput
|
|
47
|
-
requiresAdmin?: boolean
|
|
48
|
-
permissions?: readonly string[]
|
|
49
|
-
anyPermissions?: readonly string[]
|
|
50
|
-
}
|
|
51
|
-
|
|
52
|
-
export function getRoleInfo(user: PermissionUser | null | undefined): RoleInfo | null {
|
|
53
|
-
return user?.roleObj ?? user?.role_obj ?? null
|
|
54
|
-
}
|
|
55
|
-
|
|
56
|
-
export function isAdminRole(role: string | null | undefined): boolean {
|
|
57
|
-
return role === ADMIN_ROLE
|
|
58
|
-
}
|
|
59
|
-
|
|
60
|
-
export function isAdminUser(user: PermissionUser | null | undefined): boolean {
|
|
61
|
-
return isAdminRole(user?.role) || getRoleInfo(user)?.slug === ADMIN_ROLE
|
|
62
|
-
}
|
|
63
|
-
|
|
64
|
-
export function getAccessAudience(user: PermissionUser | null | undefined): Exclude<AccessAudience, 'all'> {
|
|
65
|
-
return isAdminUser(user) ? 'admin' : 'user'
|
|
66
|
-
}
|
|
67
|
-
|
|
68
|
-
export function getUserPermissions(user: PermissionUser | null | undefined): string[] {
|
|
69
|
-
const rolePermissions = getRoleInfo(user)?.permissions
|
|
70
|
-
if (rolePermissions?.length) return [...rolePermissions]
|
|
71
|
-
return [...(user?.permissions ?? [])]
|
|
72
|
-
}
|
|
73
|
-
|
|
74
|
-
export function hasAllPermissions(
|
|
75
|
-
user: PermissionUser | null | undefined,
|
|
76
|
-
permissions: readonly string[] = [],
|
|
77
|
-
): boolean {
|
|
78
|
-
if (permissions.length === 0) return true
|
|
79
|
-
if (isAdminUser(user)) return true
|
|
80
|
-
const granted = new Set(getUserPermissions(user))
|
|
81
|
-
return permissions.every(permission => granted.has(permission))
|
|
82
|
-
}
|
|
83
|
-
|
|
84
|
-
export function hasAnyPermission(
|
|
85
|
-
user: PermissionUser | null | undefined,
|
|
86
|
-
permissions: readonly string[] = [],
|
|
87
|
-
): boolean {
|
|
88
|
-
if (permissions.length === 0) return true
|
|
89
|
-
if (isAdminUser(user)) return true
|
|
90
|
-
const granted = new Set(getUserPermissions(user))
|
|
91
|
-
return permissions.some(permission => granted.has(permission))
|
|
92
|
-
}
|
|
93
|
-
|
|
94
|
-
export function canAccessAdmin(user: PermissionUser | null | undefined): boolean {
|
|
95
|
-
return isAdminUser(user) || hasAnyPermission(user, ADMIN_PANEL_PERMISSIONS)
|
|
96
|
-
}
|
|
97
|
-
|
|
98
|
-
export function canAccessPlugin(
|
|
99
|
-
user: PermissionUser | null | undefined,
|
|
100
|
-
pluginName: string | null | undefined,
|
|
101
|
-
): boolean {
|
|
102
|
-
if (!pluginName) return true
|
|
103
|
-
const access = getRoleInfo(user)?.plugin_access
|
|
104
|
-
if (!access || access === 'all') return true
|
|
105
|
-
return Array.isArray(access) && access.includes(pluginName)
|
|
106
|
-
}
|
|
107
|
-
|
|
108
|
-
export function normalizeAccessPolicy(rule: AccessControlled | AccessPolicy | undefined): AccessPolicy {
|
|
109
|
-
if (!rule) return {}
|
|
110
|
-
const { access: nested, ...direct } = rule as AccessPolicy & { access?: AccessPolicy }
|
|
111
|
-
return {
|
|
112
|
-
...(nested ?? {}),
|
|
113
|
-
...direct,
|
|
114
|
-
...('visibleFor' in rule && rule.visibleFor !== undefined ? { visibleFor: rule.visibleFor } : {}),
|
|
115
|
-
...('requiresAdmin' in rule && rule.requiresAdmin !== undefined ? { requiresAdmin: rule.requiresAdmin } : {}),
|
|
116
|
-
...('permissions' in rule && rule.permissions !== undefined ? { permissions: rule.permissions } : {}),
|
|
117
|
-
...('anyPermissions' in rule && rule.anyPermissions !== undefined ? { anyPermissions: rule.anyPermissions } : {}),
|
|
118
|
-
}
|
|
119
|
-
}
|
|
120
|
-
|
|
121
|
-
export function canAccessByPolicy(
|
|
122
|
-
user: PermissionUser | null | undefined,
|
|
123
|
-
rule: AccessControlled | AccessPolicy | undefined,
|
|
124
|
-
isAuthenticated = user !== null && user !== undefined,
|
|
125
|
-
): boolean {
|
|
126
|
-
const policy = normalizeAccessPolicy(rule)
|
|
127
|
-
if (policy.requiresAuth && !isAuthenticated) return false
|
|
128
|
-
if (policy.requiresAdmin && !isAdminUser(user)) return false
|
|
129
|
-
if (!audienceAllowsUser(policy.visibleFor ?? policy.audience, user)) return false
|
|
130
|
-
if (!hasAllPermissions(user, policy.permissions)) return false
|
|
131
|
-
if (!hasAnyPermission(user, policy.anyPermissions)) return false
|
|
132
|
-
if (policy.plugin && !canAccessPlugin(user, policy.plugin)) return false
|
|
133
|
-
return true
|
|
134
|
-
}
|
|
135
|
-
|
|
136
|
-
function audienceAllowsUser(
|
|
137
|
-
audience: AccessAudienceInput | undefined,
|
|
138
|
-
user: PermissionUser | null | undefined,
|
|
139
|
-
): boolean {
|
|
140
|
-
if (audience === undefined) return true
|
|
141
|
-
const allowed = Array.isArray(audience) ? audience : [audience]
|
|
142
|
-
if (allowed.includes('all')) return true
|
|
143
|
-
return allowed.includes(getAccessAudience(user))
|
|
144
|
-
}
|