@morscherlab/mint-sdk 1.0.0-rc.1 → 1.0.0-rc.2

package/dist/templates/builders.d.ts

@@ -1,4 +1,4 @@
-import { AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveTemplate, CalibrationCurveTemplateData, CreateBioTemplatePackCollectionOptions, CreateElisaAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapTemplate, PlateMapTemplateData, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrPlateTemplate, QpcrPlateTemplateData, ReagentListTemplate, ReagentListTemplateData, TimeCourseTemplate, TimeCourseTemplateData, SampleSheetTemplate, SampleSheetTemplateData, SamplePrepTemplate, SamplePrepTemplateData, TemplateCollection, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
+import { AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveTemplate, CalibrationCurveTemplateData, CreateBioTemplatePackCollectionOptions, CreateElisaAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapTemplate, PlateMapTemplateData, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrPlateTemplate, QpcrPlateTemplateData, ReagentListTemplate, ReagentListTemplateData, TimeCourseTemplate, TimeCourseTemplateData, SampleSheetTemplate, SampleSheetTemplateData, SamplePrepTemplate, SamplePrepTemplateData, TemplateCollection, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
 export declare const TEMPLATE_COLLECTION_KEY = "templates";
 export declare function createTemplateEnvelope<TData>(templateId: TemplateId, data: TData, metadata?: Record<string, unknown>, templateVersion?: string): BioTemplateEnvelope<TData>;
 export declare function createPlateMapTemplate(options?: CreatePlateMapTemplateOptions): PlateMapTemplate;
@@ -18,27 +18,31 @@ export declare function createBioTemplatePackCollection(name: TemplatePackId | s
 export declare function createWellPlateScreenCollection(options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
 export declare function createQpcrExpressionCollection(options?: CreateQpcrExpressionCollectionOptions): TemplateCollectionEnvelope;
 export declare function createLcmsBatchCollection(options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;
+export declare function createTargetedMetabolomicsCollection(options?: CreateTargetedMetabolomicsCollectionOptions): TemplateCollectionEnvelope;
 export declare function createElisaAssayCollection(options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;
 export declare function createFlowCytometryAssayCollection(options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;
 export declare function createWesternBlotAssayCollection(options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'wellplate-screen', options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'qpcr-expression', options?: CreateQpcrExpressionCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'lcms-batch', options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;
+export declare function createBioTemplatePresetCollection(name: 'targeted-metabolomics', options?: CreateTargetedMetabolomicsCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'elisa-assay', options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'flow-cytometry-assay', options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollection(name: 'western-blot-assay', options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
-export declare function createBioTemplatePresetCollection(name: string, options?: CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
+export declare function createBioTemplatePresetCollection(name: string, options?: CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
 export type BioTemplateControlValues = Record<string, unknown>;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'wellplate-screen', values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'qpcr-expression', values: BioTemplateControlValues): CreateQpcrExpressionCollectionOptions;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'lcms-batch', values: BioTemplateControlValues): CreateLcmsBatchCollectionOptions;
+export declare function bioTemplatePresetControlValuesToOptions(name: 'targeted-metabolomics', values: BioTemplateControlValues): CreateTargetedMetabolomicsCollectionOptions;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'elisa-assay', values: BioTemplateControlValues): CreateElisaAssayCollectionOptions;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'flow-cytometry-assay', values: BioTemplateControlValues): CreateFlowCytometryAssayCollectionOptions;
 export declare function bioTemplatePresetControlValuesToOptions(name: 'western-blot-assay', values: BioTemplateControlValues): CreateWesternBlotAssayCollectionOptions;
-export declare function bioTemplatePresetControlValuesToOptions(name: TemplatePresetId | string, values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions;
+export declare function bioTemplatePresetControlValuesToOptions(name: TemplatePresetId | string, values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'wellplate-screen', values: BioTemplateControlValues): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'qpcr-expression', values: BioTemplateControlValues): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'lcms-batch', values: BioTemplateControlValues): TemplateCollectionEnvelope;
+export declare function createBioTemplatePresetCollectionFromControls(name: 'targeted-metabolomics', values: BioTemplateControlValues): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'elisa-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'flow-cytometry-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
 export declare function createBioTemplatePresetCollectionFromControls(name: 'western-blot-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;

package/dist/templates/index.d.ts

@@ -1,4 +1,4 @@
-export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createAssayMatrixTemplate, createCalibrationCurveTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createWesternBlotAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSampleSheetTemplate, createSamplePrepTemplate, createTemplateCollection, createDefaultBioTemplate, createTimeCourseTemplate, createTemplateEnvelope, createWellPlateScreenCollection, ensureTemplateFromCollection, ensureTemplateEnvelope, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSampleSheetData, validateSamplePrepData, validateTimeCourseData, } from './builders';
+export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createAssayMatrixTemplate, createCalibrationCurveTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createWesternBlotAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSampleSheetTemplate, createSamplePrepTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createDefaultBioTemplate, createTimeCourseTemplate, createTemplateEnvelope, createWellPlateScreenCollection, ensureTemplateFromCollection, ensureTemplateEnvelope, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSampleSheetData, validateSamplePrepData, validateTimeCourseData, } from './builders';
 export type { BioTemplateControlValues, } from './builders';
 export { bioTemplateCatalog, getBioTemplateInfo, listBioTemplateCatalog, searchBioTemplateCatalog, } from './catalog';
 export { bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, createBioTemplateControlToolkit, getBioTemplateControlDefaults, getBioTemplateControlSchema, listBioTemplateControlSchemas, listBioTemplatePresetControlSchemas, requireBioTemplateControlSchema, } from './controlSchemas';
@@ -7,7 +7,7 @@ export type { BioTemplateComponentBindingsById, BioTemplateComponentPropsByCompo
 export { bioTemplatePresets, getBioTemplatePresetInfo, listBioTemplatePresets, searchBioTemplatePresets, } from './presets';
 export { bioTemplatePacks, getBioTemplatePackInfo, listBioTemplatePacks, searchBioTemplatePacks, } from './packs';
 export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, } from './adapters';
-export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
+export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
 export type { BioTemplateCatalogEntry, } from './catalog';
 export type { BioTemplateComponentBinding, BioTemplateComponentImport, BioTemplateComponentPropsBinding, BioTemplateResolvedComponentBinding, BioTemplateComponentSnippet, BioTemplateComponentSnippetOptions, BioTemplateComponentTarget, BioTemplateComponentUsage, BioTemplateComponentUsageOptions, } from './componentBindings';
 export type { BioTemplateControlSchema, BioTemplateControlTarget, } from './controlSchemas';

package/dist/templates/index.js

@@ -1,2 +1,2 @@
-import { $ as toSampleOptions, $t as validateTimeCourseData, A as toFlowPanelColumns, At as createReagentListTemplate, B as toProtocolDataFrame, Bt as extractTemplateCollection, C as toAssayMatrixRows, Ct as createFlowCytometryPanelTemplate, D as toCalibrationCurveRows, Dt as createProtocolStepsTemplate, E as toCalibrationCurveDataFrame, Et as createPlateMapTemplate, F as toInstrumentRunRows, Ft as createTimeCourseTemplate, G as toQpcrRows, Gt as validateFlowCytometryPanelData, H as toProtocolSteps, Ht as validateAssayMatrixData, I as toInstrumentRunScheduleEvents, It as createWellPlateScreenCollection, J as toReagentDataFrame, Jt as validateProtocolStepsData, K as toQpcrWellPlateWells, Kt as validateInstrumentRunData, L as toInstrumentRunSteps, Lt as createWesternBlotAssayCollection, M as toFlowPanelRows, Mt as createSampleSheetTemplate, N as toInstrumentRunColumns, Nt as createTemplateCollection, O as toDoseConditions, Ot as createQpcrExpressionCollection, P as toInstrumentRunDataFrame, Pt as createTemplateEnvelope, Q as toSampleDataFrame, Qt as validateSampleSheetData, R as toPlateMapEditorState, Rt as ensureTemplateEnvelope, S as toAssayMatrixDataFrame, St as createFlowCytometryAssayCollection, T as toCalibrationCurveColumns, Tt as createLcmsBatchCollection, U as toQpcrColumns, Ut as validateCalibrationCurveData, V as toProtocolRows, Vt as getTemplateData, W as toQpcrDataFrame, Wt as validateDoseResponseData, X as toReagentRows, Xt as validateReagentListData, Y as toReagentListItems, Yt as validateQpcrPlateData, Z as toSampleColumns, Zt as validateSamplePrepData, _ as toBioTemplateComponentPropsByComponent, _t as createBioTemplatePresetCollectionFromControls, a as getBioTemplateControlDefaults, an as getBioTemplatePackInfo, at as toTimeCourseColumns, b as toBioTemplateComponentUsage, bt as createDoseResponseTemplate, c as listBioTemplatePresetControlSchemas, cn as bioTemplateCatalog, ct as toTimeCourseSteps, d as getBioTemplateComponentProps, dn as searchBioTemplateCatalog, dt as TEMPLATE_COLLECTION_KEY, en as bioTemplatePresets, et as toSamplePrepColumns, f as listBioTemplateComponentBindings, ft as assertTemplateEnvelope, g as toBioTemplateComponentProps, gt as createBioTemplatePresetCollection, h as toBioTemplateComponentImports, ht as createBioTemplatePackCollection, i as createBioTemplateControlToolkit, in as bioTemplatePacks, it as toTemplateDataFrame, j as toFlowPanelDataFrame, jt as createSamplePrepTemplate, k as toDoseLayoutState, kt as createQpcrPlateTemplate, l as requireBioTemplateControlSchema, ln as getBioTemplateInfo, lt as toWellMapArray, m as toBioTemplateComponentBindingsById, mt as createAssayMatrixTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as listBioTemplatePresets, nt as toSamplePrepRows, o as getBioTemplateControlSchema, on as listBioTemplatePacks, ot as toTimeCourseDataFrame, p as toBioTemplateComponentBindings, pt as bioTemplatePresetControlValuesToOptions, q as toReagentColumns, qt as validatePlateMapData, r as bioTemplateControlsToSidebarPanels, rn as searchBioTemplatePresets, rt as toSampleRows, s as listBioTemplateControlSchemas, sn as searchBioTemplatePacks, st as toTimeCourseRows, t as bioTemplateControlsToFormSchema, tn as getBioTemplatePresetInfo, tt as toSamplePrepDataFrame, u as getBioTemplateComponentBindings, un as listBioTemplateCatalog, ut as toWellPlateWells, v as toBioTemplateComponentPropsById, vt as createCalibrationCurveTemplate, w as toAssayMatrixSampleOptions, wt as createInstrumentRunTemplate, x as toAssayMatrixColumns, xt as createElisaAssayCollection, y as toBioTemplateComponentSnippets, yt as createDefaultBioTemplate, z as toProtocolColumns, zt as ensureTemplateFromCollection } from "../templates-BSlxwV2c.js";
-export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };
+import { $ as toSampleOptions, $t as validateSampleSheetData, A as toFlowPanelColumns, At as createReagentListTemplate, B as toProtocolDataFrame, Bt as ensureTemplateFromCollection, C as toAssayMatrixRows, Ct as createFlowCytometryPanelTemplate, D as toCalibrationCurveRows, Dt as createProtocolStepsTemplate, E as toCalibrationCurveDataFrame, Et as createPlateMapTemplate, F as toInstrumentRunRows, Ft as createTemplateEnvelope, G as toQpcrRows, Gt as validateDoseResponseData, H as toProtocolSteps, Ht as getTemplateData, I as toInstrumentRunScheduleEvents, It as createTimeCourseTemplate, J as toReagentDataFrame, Jt as validatePlateMapData, K as toQpcrWellPlateWells, Kt as validateFlowCytometryPanelData, L as toInstrumentRunSteps, Lt as createWellPlateScreenCollection, M as toFlowPanelRows, Mt as createSampleSheetTemplate, N as toInstrumentRunColumns, Nt as createTargetedMetabolomicsCollection, O as toDoseConditions, Ot as createQpcrExpressionCollection, P as toInstrumentRunDataFrame, Pt as createTemplateCollection, Q as toSampleDataFrame, Qt as validateSamplePrepData, R as toPlateMapEditorState, Rt as createWesternBlotAssayCollection, S as toAssayMatrixDataFrame, St as createFlowCytometryAssayCollection, T as toCalibrationCurveColumns, Tt as createLcmsBatchCollection, U as toQpcrColumns, Ut as validateAssayMatrixData, V as toProtocolRows, Vt as extractTemplateCollection, W as toQpcrDataFrame, Wt as validateCalibrationCurveData, X as toReagentRows, Xt as validateQpcrPlateData, Y as toReagentListItems, Yt as validateProtocolStepsData, Z as toSampleColumns, Zt as validateReagentListData, _ as toBioTemplateComponentPropsByComponent, _t as createBioTemplatePresetCollectionFromControls, a as getBioTemplateControlDefaults, an as bioTemplatePacks, at as toTimeCourseColumns, b as toBioTemplateComponentUsage, bt as createDoseResponseTemplate, c as listBioTemplatePresetControlSchemas, cn as searchBioTemplatePacks, ct as toTimeCourseSteps, d as getBioTemplateComponentProps, dn as listBioTemplateCatalog, dt as TEMPLATE_COLLECTION_KEY, en as validateTimeCourseData, et as toSamplePrepColumns, f as listBioTemplateComponentBindings, fn as searchBioTemplateCatalog, ft as assertTemplateEnvelope, g as toBioTemplateComponentProps, gt as createBioTemplatePresetCollection, h as toBioTemplateComponentImports, ht as createBioTemplatePackCollection, i as createBioTemplateControlToolkit, in as searchBioTemplatePresets, it as toTemplateDataFrame, j as toFlowPanelDataFrame, jt as createSamplePrepTemplate, k as toDoseLayoutState, kt as createQpcrPlateTemplate, l as requireBioTemplateControlSchema, ln as bioTemplateCatalog, lt as toWellMapArray, m as toBioTemplateComponentBindingsById, mt as createAssayMatrixTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as getBioTemplatePresetInfo, nt as toSamplePrepRows, o as getBioTemplateControlSchema, on as getBioTemplatePackInfo, ot as toTimeCourseDataFrame, p as toBioTemplateComponentBindings, pt as bioTemplatePresetControlValuesToOptions, q as toReagentColumns, qt as validateInstrumentRunData, r as bioTemplateControlsToSidebarPanels, rn as listBioTemplatePresets, rt as toSampleRows, s as listBioTemplateControlSchemas, sn as listBioTemplatePacks, st as toTimeCourseRows, t as bioTemplateControlsToFormSchema, tn as bioTemplatePresets, tt as toSamplePrepDataFrame, u as getBioTemplateComponentBindings, un as getBioTemplateInfo, ut as toWellPlateWells, v as toBioTemplateComponentPropsById, vt as createCalibrationCurveTemplate, w as toAssayMatrixSampleOptions, wt as createInstrumentRunTemplate, x as toAssayMatrixColumns, xt as createElisaAssayCollection, y as toBioTemplateComponentSnippets, yt as createDefaultBioTemplate, z as toProtocolColumns, zt as ensureTemplateEnvelope } from "../templates-BorLR_7p.js";
+export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };

package/dist/templates/presets.d.ts

@@ -48,6 +48,18 @@ export declare const bioTemplatePresets: readonly [{
     readonly frontend_import: "import { createLcmsBatchCollection, toAssayMatrixSampleOptions, toInstrumentRunDataFrame, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
     readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents", "toAssayMatrixDataFrame", "toAssayMatrixSampleOptions"];
     readonly components: readonly ["DataFrame", "ExperimentTimeline", "ScheduleCalendar", "ChartContainer", "SampleSelector"];
+}, {
+    readonly name: "targeted-metabolomics";
+    readonly label: "Targeted metabolomics";
+    readonly category: "bio-template-preset";
+    readonly purpose: "Sample metadata, extraction prep, internal standards, LC/GC-MS sequence, calibration curve, and metabolite readout matrix for quantitative metabolomics.";
+    readonly templates: readonly ["sample-sheet", "sample-prep", "reagent-list", "instrument-run", "calibration-curve", "assay-matrix"];
+    readonly aliases: readonly ["targeted metabolomics", "quantitative metabolomics", "lc-ms metabolomics", "gc-ms metabolomics", "targeted lcms", "metabolite quantitation", "mass spec quantitation", "internal standards", "peak area ratio"];
+    readonly python_import: "from mint_sdk.templates import create_targeted_metabolomics_collection, save_template_collection";
+    readonly python_example: "create_targeted_metabolomics_collection(samples=[\"S001\", \"S002\"], metabolites=[\"Glucose\", \"Lactate\"], internal_standards=[\"13C Glucose\"], instrument=\"LC-MS\")";
+    readonly frontend_import: "import { createTargetedMetabolomicsCollection, toInstrumentRunDataFrame, toCalibrationCurveDataFrame, toAssayMatrixDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
+    readonly frontend_adapters: readonly ["toTemplateDataFrame", "toSamplePrepDataFrame", "toReagentDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents", "toCalibrationCurveDataFrame", "toAssayMatrixDataFrame", "toAssayMatrixSampleOptions"];
+    readonly components: readonly ["DataFrame", "ReagentList", "ExperimentTimeline", "ScheduleCalendar", "FitPanel", "ChartContainer", "SampleSelector"];
 }, {
     readonly name: "elisa-assay";
     readonly label: "ELISA assay";

package/dist/templates/types.d.ts

@@ -1,7 +1,7 @@
 import { DataFrameColumn, PlateCondition, PlateMap, PlateMapEditorState, ProtocolStep, Reagent, ScheduleEvent, SampleType, SelectOption, Well, WellPlateFormat } from '../types';
 export type TemplateKind = 'experiment-design';
 export type TemplateId = 'plate-map' | 'sample-sheet' | 'sample-prep' | 'dose-response' | 'calibration-curve' | 'time-course' | 'protocol-steps' | 'assay-matrix' | 'reagent-list' | 'flow-cytometry-panel' | 'instrument-run' | 'qpcr-plate';
-export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
+export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'targeted-metabolomics' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
 export type TemplatePackId = 'cell-culture-screen' | 'omics-assay' | 'longitudinal-study' | 'molecular-assay';
 export interface CreateBioTemplatePackCollectionOptions {
     metadata?: Record<string, unknown>;
@@ -461,6 +461,21 @@ export interface CreateLcmsBatchCollectionOptions {
     includeQc?: boolean;
     metadata?: Record<string, unknown>;
 }
+export interface CreateTargetedMetabolomicsCollectionOptions {
+    samples?: Array<string | SampleRecord>;
+    metabolites?: Array<string | AssayFeature>;
+    internalStandards?: Array<string | ReagentTemplateInput>;
+    standardConcentrations?: number[];
+    concentrationUnit?: string;
+    responseUnit?: string;
+    calibrationAnalyte?: string;
+    instrument?: string;
+    method?: string | InstrumentMethodInput;
+    prepType?: SamplePrepStepType;
+    outputVolume?: number;
+    includeQc?: boolean;
+    metadata?: Record<string, unknown>;
+}
 export interface CreateElisaAssayCollectionOptions {
     samples?: Array<string | SampleRecord>;
     analyte?: string;

package/dist/{templates-BSlxwV2c.js → templates-BorLR_7p.js}

@@ -4504,7 +4504,12 @@ function controlsToSettingsSchema(controls, options = {}) {
 			icon: typeof config.icon === "string" ? config.icon : void 0,
 			fields: sectionControls.map(controlToFormField),
 			columns: config.columns ?? options.columns ?? 1,
-			condition: config.condition
+			condition: config.condition,
+			access: config.access,
+			visibleFor: config.visibleFor,
+			requiresAdmin: config.requiresAdmin,
+			permissions: config.permissions,
+			anyPermissions: config.anyPermissions
 		};
 	}) };
 }
@@ -4796,6 +4801,11 @@ function controlToFormField(control) {
 		readonly: definition.readonly,
 		validation: validationForControl(definition),
 		condition: definition.condition,
+		access: definition.access,
+		visibleFor: definition.visibleFor,
+		requiresAdmin: definition.requiresAdmin,
+		permissions: definition.permissions,
+		anyPermissions: definition.anyPermissions,
 		colSpan: definition.colSpan,
 		props
 	};
@@ -5595,6 +5605,54 @@ var bioTemplatePresets = [
 			"SampleSelector"
 		]
 	},
+	{
+		name: "targeted-metabolomics",
+		label: "Targeted metabolomics",
+		category: "bio-template-preset",
+		purpose: "Sample metadata, extraction prep, internal standards, LC/GC-MS sequence, calibration curve, and metabolite readout matrix for quantitative metabolomics.",
+		templates: [
+			"sample-sheet",
+			"sample-prep",
+			"reagent-list",
+			"instrument-run",
+			"calibration-curve",
+			"assay-matrix"
+		],
+		aliases: [
+			"targeted metabolomics",
+			"quantitative metabolomics",
+			"lc-ms metabolomics",
+			"gc-ms metabolomics",
+			"targeted lcms",
+			"metabolite quantitation",
+			"mass spec quantitation",
+			"internal standards",
+			"peak area ratio"
+		],
+		python_import: "from mint_sdk.templates import create_targeted_metabolomics_collection, save_template_collection",
+		python_example: "create_targeted_metabolomics_collection(samples=[\"S001\", \"S002\"], metabolites=[\"Glucose\", \"Lactate\"], internal_standards=[\"13C Glucose\"], instrument=\"LC-MS\")",
+		frontend_import: "import { createTargetedMetabolomicsCollection, toInstrumentRunDataFrame, toCalibrationCurveDataFrame, toAssayMatrixDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'",
+		frontend_adapters: [
+			"toTemplateDataFrame",
+			"toSamplePrepDataFrame",
+			"toReagentDataFrame",
+			"toInstrumentRunDataFrame",
+			"toInstrumentRunSteps",
+			"toInstrumentRunScheduleEvents",
+			"toCalibrationCurveDataFrame",
+			"toAssayMatrixDataFrame",
+			"toAssayMatrixSampleOptions"
+		],
+		components: [
+			"DataFrame",
+			"ReagentList",
+			"ExperimentTimeline",
+			"ScheduleCalendar",
+			"FitPanel",
+			"ChartContainer",
+			"SampleSelector"
+		]
+	},
 	{
 		name: "elisa-assay",
 		label: "ELISA assay",
@@ -6400,6 +6458,72 @@ function createLcmsBatchCollection(options = {}) {
 		...options.metadata ?? {}
 	});
 }
+function createTargetedMetabolomicsCollection(options = {}) {
+	const sampleRecords = presetSampleRecords(options.samples ?? ["S001", "S002"]);
+	const responseUnit = options.responseUnit ?? "peak area ratio";
+	const concentrationUnit = options.concentrationUnit ?? "uM";
+	const metaboliteFeatures = normalizeMetaboliteFeatures(options.metabolites ?? [
+		"Glucose",
+		"Lactate",
+		"Pyruvate"
+	], responseUnit);
+	const sampleSheet = createSampleSheetTemplate({ samples: sampleRecords });
+	const samplePrep = createSamplePrepTemplate({
+		samples: sampleRecords.map((sample) => sample.sampleId),
+		prepType: options.prepType ?? "extraction",
+		protocolName: "Metabolomics sample preparation",
+		outputVolume: options.outputVolume ?? 50,
+		metadata: { assay: "targeted-metabolomics" }
+	});
+	const reagents = createReagentListTemplate({
+		reagents: normalizeInternalStandardReagents(options.internalStandards ?? ["Stable isotope internal standard mix"]),
+		metadata: { assay: "targeted-metabolomics" }
+	});
+	const calibrationCurve = createCalibrationCurveTemplate({
+		concentrations: options.standardConcentrations ?? [
+			.1,
+			1,
+			10,
+			100
+		],
+		analyte: options.calibrationAnalyte ?? firstFeatureName(metaboliteFeatures, "Metabolite panel"),
+		unit: concentrationUnit,
+		responseUnit,
+		model: "linear-weighted-1-x",
+		includeQc: options.includeQc,
+		metadata: { assay: "targeted-metabolomics" }
+	});
+	return createTemplateCollection([
+		sampleSheet,
+		samplePrep,
+		reagents,
+		createInstrumentRunTemplate({
+			items: targetedMetabolomicsRunItems(sampleRecords, calibrationCurve.data.points, options.includeQc !== false),
+			method: options.method ?? "Targeted metabolomics",
+			instrument: options.instrument ?? "LC-MS",
+			includeBlanks: false,
+			includeQc: false,
+			metadata: { assay: "targeted-metabolomics" }
+		}),
+		calibrationCurve,
+		createAssayMatrixTemplate({
+			samples: sampleRecords.map((sample) => ({
+				sampleId: sample.sampleId,
+				name: sample.name,
+				group: sample.group,
+				metadata: sample.metadata ?? {}
+			})),
+			features: metaboliteFeatures,
+			metadata: {
+				assay: "targeted-metabolomics",
+				responseUnit
+			}
+		})
+	], {
+		preset: "targeted-metabolomics",
+		...options.metadata ?? {}
+	});
+}
 function createElisaAssayCollection(options = {}) {
 	const sampleRecords = presetSampleRecords(options.samples ?? ["Control", "Treatment"]);
 	const analyte = options.analyte ?? "Analyte";
@@ -6629,6 +6753,7 @@ function createBioTemplatePresetCollection(name, options = {}) {
 	if (preset.name === "wellplate-screen") return createWellPlateScreenCollection(options);
 	if (preset.name === "qpcr-expression") return createQpcrExpressionCollection(options);
 	if (preset.name === "lcms-batch") return createLcmsBatchCollection(options);
+	if (preset.name === "targeted-metabolomics") return createTargetedMetabolomicsCollection(options);
 	if (preset.name === "elisa-assay") return createElisaAssayCollection(options);
 	if (preset.name === "flow-cytometry-assay") return createFlowCytometryAssayCollection(options);
 	if (preset.name === "western-blot-assay") return createWesternBlotAssayCollection(options);
@@ -6660,6 +6785,29 @@ function bioTemplatePresetControlValuesToOptions(name, values) {
 		method: readString(values.method, "Default method"),
 		includeQc: readBoolean(values.includeQc, true)
 	};
+	if (preset.name === "targeted-metabolomics") return {
+		samples: readStringList(values.sampleNames, ["S001", "S002"]),
+		metabolites: readStringList(values.metaboliteNames, [
+			"Glucose",
+			"Lactate",
+			"Pyruvate"
+		]),
+		internalStandards: readStringList(values.internalStandards, ["Stable isotope internal standard mix"]),
+		standardConcentrations: readNumberList(values.standardConcentrations, [
+			.1,
+			1,
+			10,
+			100
+		]),
+		concentrationUnit: readString(values.concentrationUnit, "uM"),
+		responseUnit: readString(values.responseUnit, "peak area ratio"),
+		calibrationAnalyte: readOptionalString(values.calibrationAnalyte),
+		instrument: readString(values.instrument, "LC-MS"),
+		method: readString(values.method, "Targeted metabolomics"),
+		prepType: readString(values.prepType, "extraction"),
+		outputVolume: readNumber(values.outputVolume, 50),
+		includeQc: readBoolean(values.includeQc, true)
+	};
 	if (preset.name === "elisa-assay") return {
 		samples: readStringList(values.sampleNames, ["Control", "Treatment"]),
 		analyte: readString(values.analyte, "Analyte"),
@@ -7038,6 +7186,71 @@ function normalizeReagent(reagent) {
 		metadata: reagent.metadata ?? {}
 	};
 }
+function normalizeMetaboliteFeatures(metabolites, responseUnit) {
+	return metabolites.map((metabolite, index) => {
+		if (typeof metabolite === "string") return {
+			id: idFromName(metabolite, `metabolite-${index + 1}`),
+			name: metabolite,
+			type: "metabolite",
+			unit: responseUnit,
+			metadata: { quantitation: "targeted" }
+		};
+		const feature = normalizeAssayFeature(metabolite);
+		return {
+			...feature,
+			type: feature.type ?? "metabolite",
+			unit: feature.unit ?? responseUnit,
+			metadata: {
+				quantitation: "targeted",
+				...feature.metadata
+			}
+		};
+	});
+}
+function normalizeInternalStandardReagents(internalStandards) {
+	return internalStandards.map((standard, index) => {
+		if (typeof standard === "string") return {
+			id: idFromName(standard, `internal-standard-${index + 1}`),
+			name: standard,
+			kind: "compound",
+			metadata: { role: "internal-standard" }
+		};
+		const reagent = normalizeReagent(standard);
+		return {
+			...reagent,
+			kind: standard.kind ?? "compound",
+			metadata: {
+				role: "internal-standard",
+				...reagent.metadata
+			}
+		};
+	});
+}
+function targetedMetabolomicsRunItems(samples, calibrationPoints, includeQc) {
+	const calibrationItems = calibrationPoints.filter((point) => point.role !== "qc" || includeQc).filter((point) => point.role === "blank" || point.role === "standard" || point.role === "qc").map((point) => ({
+		id: `${point.id}-run`,
+		kind: calibrationRunItemKind(point.role),
+		name: point.level,
+		metadata: {
+			concentration: point.concentration,
+			unit: point.unit,
+			role: point.role
+		}
+	}));
+	const sampleItems = samples.map((sample) => ({
+		sampleId: sample.sampleId,
+		name: sample.name ?? sample.sampleId,
+		kind: "sample"
+	}));
+	return [...calibrationItems, ...sampleItems];
+}
+function calibrationRunItemKind(role) {
+	if (role === "blank" || role === "standard" || role === "qc") return role;
+	return "standard";
+}
+function firstFeatureName(features, fallback) {
+	return features.find((feature) => feature.name)?.name ?? fallback;
+}
 function normalizeDateString(value) {
 	if (value === void 0 || value === null) return void 0;
 	return value instanceof Date ? value.toISOString() : value;
@@ -7212,6 +7425,10 @@ function readInteger(value, fallback) {
 	const parsed = typeof value === "number" ? value : typeof value === "string" ? Number(value) : NaN;
 	return Number.isFinite(parsed) ? Math.max(1, Math.round(parsed)) : fallback;
 }
+function readNumber(value, fallback) {
+	const parsed = typeof value === "number" ? value : typeof value === "string" ? Number(value) : NaN;
+	return Number.isFinite(parsed) ? parsed : fallback;
+}
 function readBoolean(value, fallback) {
 	return typeof value === "boolean" ? value : fallback;
 }
@@ -9265,6 +9482,99 @@ var presetControlSchemas = {
 		...templateControlSchemas["instrument-run"],
 		...templateControlSchemas["assay-matrix"]
 	},
+	"targeted-metabolomics": {
+		sampleNames: {
+			type: "tags",
+			label: "Samples",
+			default: ["S001", "S002"],
+			section: "samples",
+			sectionLabel: "Samples",
+			sectionSubtitle: "Unknowns and QC pool",
+			view: "run",
+			sidebar: {
+				icon: ICONS.samples,
+				iconColor: "#10b981",
+				iconBg: "#d1fae5"
+			}
+		},
+		metaboliteNames: {
+			type: "tags",
+			label: "Metabolites",
+			default: [
+				"Glucose",
+				"Lactate",
+				"Pyruvate"
+			],
+			section: "features",
+			sectionLabel: "Metabolites",
+			sectionSubtitle: "Quantitation panel",
+			view: "analysis",
+			sidebar: {
+				icon: ICONS.table,
+				iconColor: "#0ea5e9",
+				iconBg: "#e0f2fe"
+			}
+		},
+		internalStandards: {
+			type: "tags",
+			label: "Internal standards",
+			default: ["Stable isotope internal standard mix"],
+			section: "standards",
+			sectionLabel: "Standards",
+			sectionSubtitle: "Calibration and internal standards",
+			view: "analysis",
+			sidebar: {
+				icon: ICONS.dose,
+				iconColor: "#8b5cf6",
+				iconBg: "#ede9fe"
+			}
+		},
+		standardConcentrations: {
+			type: "tags",
+			label: "Calibration levels",
+			default: [
+				"0.1",
+				"1",
+				"10",
+				"100"
+			],
+			section: "standards",
+			view: "analysis"
+		},
+		concentrationUnit: {
+			label: "Concentration unit",
+			default: "uM",
+			options: CONCENTRATION_UNITS,
+			section: "standards",
+			view: "analysis"
+		},
+		responseUnit: {
+			label: "Response unit",
+			default: "peak area ratio",
+			section: "readout",
+			sectionLabel: "Readout",
+			view: "analysis",
+			sidebar: {
+				icon: ICONS.table,
+				iconColor: "#0ea5e9",
+				iconBg: "#e0f2fe"
+			}
+		},
+		instrument: {
+			...templateControlSchemas["instrument-run"].instrument,
+			default: "LC-MS"
+		},
+		method: {
+			...templateControlSchemas["instrument-run"].method,
+			default: "Targeted metabolomics"
+		},
+		prepType: {
+			...templateControlSchemas["sample-prep"].prepType,
+			default: "extraction"
+		},
+		outputVolume: templateControlSchemas["sample-prep"].outputVolume,
+		includeQc: templateControlSchemas["instrument-run"].includeQc
+	},
 	"elisa-assay": {
 		sampleNames: {
 			type: "tags",
@@ -9581,6 +9891,6 @@ function capitalize(value) {
 	return value.charAt(0).toUpperCase() + value.slice(1);
 }
 //#endregion
-export { toSampleOptions as $, compareTime as $n, validateTimeCourseData as $t, toFlowPanelColumns as A, defineWellPlateDoseControlProps as An, createReagentListTemplate as At, toProtocolDataFrame as B, useConcentrationUnits as Bn, extractTemplateCollection as Bt, toAssayMatrixRows as C, defineControlComponentBindings as Cn, BaseCheckbox_default as Cr, createFlowCytometryPanelTemplate as Ct, toCalibrationCurveRows as D, defineDoseDesignControlModel as Dn, BaseInput_default as Dr, createProtocolStepsTemplate as Dt, toCalibrationCurveDataFrame as E, defineDoseCalculatorControlProps as En, BaseTextarea_default as Er, createPlateMapTemplate as Et, toInstrumentRunRows as F, useControlWorkspace as Fn, createTimeCourseTemplate as Ft, toQpcrRows as G, ATOMIC_WEIGHTS as Gn, validateFlowCytometryPanelData as Gt, toProtocolSteps as H, SequenceInput_default as Hn, validateAssayMatrixData as Ht, toInstrumentRunScheduleEvents as I, getFieldRegistryEntry as In, createWellPlateScreenCollection as It, toReagentDataFrame as J, FileUploader_default as Jn, validateProtocolStepsData as Jt, toQpcrWellPlateWells as K, useChemicalFormula as Kn, validateInstrumentRunData as Kt, toInstrumentRunSteps as L, getTypeDefault as Ln, createWesternBlotAssayCollection as Lt, toFlowPanelRows as M, getDefaultControlView as Mn, createSampleSheetTemplate as Mt, toInstrumentRunColumns as N, mergeControlWorkspaceOptions as Nn, createTemplateCollection as Nt, toDoseConditions as O, defineWellPlateControlProps as On, createQpcrExpressionCollection as Ot, toInstrumentRunDataFrame as P, useControlSchema as Pn, createTemplateEnvelope as Pt, toSampleDataFrame as Q, addMinutes$1 as Qn, validateSampleSheetData as Qt, toPlateMapEditorState as R, ConcentrationInput_default as Rn, ensureTemplateEnvelope as Rt, toAssayMatrixDataFrame as S, controlsToViewItems as Sn, BaseToggle_default as Sr, createFlowCytometryAssayCollection as St, toCalibrationCurveColumns as T, defineControls as Tn, normalizeOptionInput as Tr, createLcmsBatchCollection as Tt, toQpcrColumns as U, useSequenceUtils as Un, validateCalibrationCurveData as Ut, toProtocolRows as V, MoleculeInput_default as Vn, getTemplateData as Vt, toQpcrDataFrame as W, FormulaInput_default as Wn, validateDoseResponseData as Wt, toReagentRows as X, TagsInput_default as Xn, validateReagentListData as Xt, toReagentListItems as Y, NumberInput_default as Yn, validateQpcrPlateData as Yt, toSampleColumns as Z, TimePicker_default as Zn, validateSamplePrepData as Zt, toBioTemplateComponentPropsByComponent as _, controlsToSectionFormSchemas as _n, useListSelection as _r, createBioTemplatePresetCollectionFromControls as _t, getBioTemplateControlDefaults as a, getBioTemplatePackInfo as an, formatTimeSlot as ar, toTimeCourseColumns as at, toBioTemplateComponentUsage as b, controlsToTopBarSettingsConfig as bn, BaseSlider_default as br, createDoseResponseTemplate as bt, listBioTemplatePresetControlSchemas as c, bioTemplateCatalog as cn, isTimeInRange as cr, toTimeCourseSteps as ct, getBioTemplateComponentProps as d, searchBioTemplateCatalog as dn, snapToSlot as dr, TEMPLATE_COLLECTION_KEY as dt, bioTemplatePresets as en, durationMinutes as er, toSamplePrepColumns as et, listBioTemplateComponentBindings as f, controlValuesToComponentBindings as fn, toMinutes as fr, assertTemplateEnvelope as ft, toBioTemplateComponentProps as g, controlsToSectionFormSchema as gn, MultiSelect_default as gr, createBioTemplatePresetCollection as gt, toBioTemplateComponentImports as h, controlsToFormSchema as hn, useDropdownState as hr, createBioTemplatePackCollection as ht, createBioTemplateControlToolkit as i, bioTemplatePacks as in, formatTime as ir, toTemplateDataFrame as it, toFlowPanelDataFrame as j, getControlDefaults as jn, createSamplePrepTemplate as jt, toDoseLayoutState as k, defineWellPlateDoseComponentBindings as kn, createQpcrPlateTemplate as kt, requireBioTemplateControlSchema as l, getBioTemplateInfo as ln, parseTime as lr, toWellMapArray as lt, toBioTemplateComponentBindingsById as m, controlValuesToComponentProps as mn, DatePicker_default as mr, createAssayMatrixTemplate as mt, bioTemplateControlsToSectionFormSchemas as n, listBioTemplatePresets as nn, findNearestTimeSlotIndex as nr, toSamplePrepRows as nt, getBioTemplateControlSchema as o, listBioTemplatePacks as on, fromMinutes as or, toTimeCourseDataFrame as ot, toBioTemplateComponentBindings as p, controlValuesToComponentBindingsById as pn, useTimeUtils as pr, bioTemplatePresetControlValuesToOptions as pt, toReagentColumns as q, DateTimePicker_default as qn, validatePlateMapData as qt, bioTemplateControlsToSidebarPanels as r, searchBioTemplatePresets as rn, formatDuration as rr, toSampleRows as rt, listBioTemplateControlSchemas as s, searchBioTemplatePacks as sn, generateTimeSlots as sr, toTimeCourseRows as st, bioTemplateControlsToFormSchema as t, getBioTemplatePresetInfo as tn, findAvailableSlots as tr, toSamplePrepDataFrame as tt, getBioTemplateComponentBindings as u, listBioTemplateCatalog as un, rangesOverlap as ur, toWellPlateWells as ut, toBioTemplateComponentPropsById as v, controlsToSettingsSchema as vn, useSelectionLimit as vr, createCalibrationCurveTemplate as vt, toAssayMatrixSampleOptions as w, defineControlModel as wn, BaseSelect_default as wr, createInstrumentRunTemplate as wt, toAssayMatrixColumns as x, controlsToViewIds as xn, BaseRadioGroup_default as xr, createElisaAssayCollection as xt, toBioTemplateComponentSnippets as y, controlsToSidebarPanels as yn, useEventListener as yr, createDefaultBioTemplate as yt, toProtocolColumns as z, UnitInput_default as zn, ensureTemplateFromCollection as zt };
+export { toSampleOptions as $, addMinutes$1 as $n, validateSampleSheetData as $t, toFlowPanelColumns as A, defineWellPlateDoseComponentBindings as An, createReagentListTemplate as At, toProtocolDataFrame as B, UnitInput_default as Bn, ensureTemplateFromCollection as Bt, toAssayMatrixRows as C, controlsToViewItems as Cn, BaseToggle_default as Cr, createFlowCytometryPanelTemplate as Ct, toCalibrationCurveRows as D, defineDoseCalculatorControlProps as Dn, BaseTextarea_default as Dr, createProtocolStepsTemplate as Dt, toCalibrationCurveDataFrame as E, defineControls as En, normalizeOptionInput as Er, createPlateMapTemplate as Et, toInstrumentRunRows as F, useControlSchema as Fn, createTemplateEnvelope as Ft, toQpcrRows as G, FormulaInput_default as Gn, validateDoseResponseData as Gt, toProtocolSteps as H, MoleculeInput_default as Hn, getTemplateData as Ht, toInstrumentRunScheduleEvents as I, useControlWorkspace as In, createTimeCourseTemplate as It, toReagentDataFrame as J, DateTimePicker_default as Jn, validatePlateMapData as Jt, toQpcrWellPlateWells as K, ATOMIC_WEIGHTS as Kn, validateFlowCytometryPanelData as Kt, toInstrumentRunSteps as L, getFieldRegistryEntry as Ln, createWellPlateScreenCollection as Lt, toFlowPanelRows as M, getControlDefaults as Mn, createSampleSheetTemplate as Mt, toInstrumentRunColumns as N, getDefaultControlView as Nn, createTargetedMetabolomicsCollection as Nt, toDoseConditions as O, defineDoseDesignControlModel as On, BaseInput_default as Or, createQpcrExpressionCollection as Ot, toInstrumentRunDataFrame as P, mergeControlWorkspaceOptions as Pn, createTemplateCollection as Pt, toSampleDataFrame as Q, TimePicker_default as Qn, validateSamplePrepData as Qt, toPlateMapEditorState as R, getTypeDefault as Rn, createWesternBlotAssayCollection as Rt, toAssayMatrixDataFrame as S, controlsToViewIds as Sn, BaseRadioGroup_default as Sr, createFlowCytometryAssayCollection as St, toCalibrationCurveColumns as T, defineControlModel as Tn, BaseSelect_default as Tr, createLcmsBatchCollection as Tt, toQpcrColumns as U, SequenceInput_default as Un, validateAssayMatrixData as Ut, toProtocolRows as V, useConcentrationUnits as Vn, extractTemplateCollection as Vt, toQpcrDataFrame as W, useSequenceUtils as Wn, validateCalibrationCurveData as Wt, toReagentRows as X, NumberInput_default as Xn, validateQpcrPlateData as Xt, toReagentListItems as Y, FileUploader_default as Yn, validateProtocolStepsData as Yt, toSampleColumns as Z, TagsInput_default as Zn, validateReagentListData as Zt, toBioTemplateComponentPropsByComponent as _, controlsToSectionFormSchema as _n, MultiSelect_default as _r, createBioTemplatePresetCollectionFromControls as _t, getBioTemplateControlDefaults as a, bioTemplatePacks as an, formatTime as ar, toTimeCourseColumns as at, toBioTemplateComponentUsage as b, controlsToSidebarPanels as bn, useEventListener as br, createDoseResponseTemplate as bt, listBioTemplatePresetControlSchemas as c, searchBioTemplatePacks as cn, generateTimeSlots as cr, toTimeCourseSteps as ct, getBioTemplateComponentProps as d, listBioTemplateCatalog as dn, rangesOverlap as dr, TEMPLATE_COLLECTION_KEY as dt, validateTimeCourseData as en, compareTime as er, toSamplePrepColumns as et, listBioTemplateComponentBindings as f, searchBioTemplateCatalog as fn, snapToSlot as fr, assertTemplateEnvelope as ft, toBioTemplateComponentProps as g, controlsToFormSchema as gn, useDropdownState as gr, createBioTemplatePresetCollection as gt, toBioTemplateComponentImports as h, controlValuesToComponentProps as hn, DatePicker_default as hr, createBioTemplatePackCollection as ht, createBioTemplateControlToolkit as i, searchBioTemplatePresets as in, formatDuration as ir, toTemplateDataFrame as it, toFlowPanelDataFrame as j, defineWellPlateDoseControlProps as jn, createSamplePrepTemplate as jt, toDoseLayoutState as k, defineWellPlateControlProps as kn, createQpcrPlateTemplate as kt, requireBioTemplateControlSchema as l, bioTemplateCatalog as ln, isTimeInRange as lr, toWellMapArray as lt, toBioTemplateComponentBindingsById as m, controlValuesToComponentBindingsById as mn, useTimeUtils as mr, createAssayMatrixTemplate as mt, bioTemplateControlsToSectionFormSchemas as n, getBioTemplatePresetInfo as nn, findAvailableSlots as nr, toSamplePrepRows as nt, getBioTemplateControlSchema as o, getBioTemplatePackInfo as on, formatTimeSlot as or, toTimeCourseDataFrame as ot, toBioTemplateComponentBindings as p, controlValuesToComponentBindings as pn, toMinutes as pr, bioTemplatePresetControlValuesToOptions as pt, toReagentColumns as q, useChemicalFormula as qn, validateInstrumentRunData as qt, bioTemplateControlsToSidebarPanels as r, listBioTemplatePresets as rn, findNearestTimeSlotIndex as rr, toSampleRows as rt, listBioTemplateControlSchemas as s, listBioTemplatePacks as sn, fromMinutes as sr, toTimeCourseRows as st, bioTemplateControlsToFormSchema as t, bioTemplatePresets as tn, durationMinutes as tr, toSamplePrepDataFrame as tt, getBioTemplateComponentBindings as u, getBioTemplateInfo as un, parseTime as ur, toWellPlateWells as ut, toBioTemplateComponentPropsById as v, controlsToSectionFormSchemas as vn, useListSelection as vr, createCalibrationCurveTemplate as vt, toAssayMatrixSampleOptions as w, defineControlComponentBindings as wn, BaseCheckbox_default as wr, createInstrumentRunTemplate as wt, toAssayMatrixColumns as x, controlsToTopBarSettingsConfig as xn, BaseSlider_default as xr, createElisaAssayCollection as xt, toBioTemplateComponentSnippets as y, controlsToSettingsSchema as yn, useSelectionLimit as yr, createDefaultBioTemplate as yt, toProtocolColumns as z, ConcentrationInput_default as zn, ensureTemplateEnvelope as zt };
 
-//# sourceMappingURL=templates-BSlxwV2c.js.map
+//# sourceMappingURL=templates-BorLR_7p.js.map