@morscherlab/mint-sdk 1.0.0-rc.1 → 1.0.0-rc.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +9 -1
- package/dist/__tests__/components/LcmsSequenceTable.test.d.ts +1 -0
- package/dist/__tests__/components/ProgressBar.test.d.ts +1 -0
- package/dist/__tests__/components/RackEditor.test.d.ts +1 -0
- package/dist/__tests__/components/SequenceProgressBar.test.d.ts +1 -0
- package/dist/__tests__/composables/useExperimentSamples.test.d.ts +1 -0
- package/dist/__tests__/utils/instrument.test.d.ts +1 -0
- package/dist/__tests__/utils/lcms.test.d.ts +1 -0
- package/dist/__tests__/utils/permissions.test.d.ts +1 -0
- package/dist/__tests__/utils/rack.test.d.ts +1 -0
- package/dist/{auth-CBG3bWEc.js → auth-B7g4J4ZF.js} +99 -5
- package/dist/auth-B7g4J4ZF.js.map +1 -0
- package/dist/components/AutoGroupModal.vue.d.ts +1 -1
- package/dist/components/BaseCheckbox.vue.d.ts +1 -1
- package/dist/components/BaseToggle.vue.d.ts +2 -2
- package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +1 -1
- package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +1 -1
- package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts +1 -1
- package/dist/components/DoseDesignWorkspaceView.vue.d.ts +1 -1
- package/dist/components/FormulaInput.vue.d.ts +1 -1
- package/dist/components/InstrumentAlertLog.vue.d.ts +22 -0
- package/dist/components/InstrumentStateBadge.vue.d.ts +11 -0
- package/dist/components/InstrumentStatusCard.vue.d.ts +13 -0
- package/dist/components/LcmsSequenceTable.vue.d.ts +26 -0
- package/dist/components/ProgressBar.vue.d.ts +1 -0
- package/dist/components/RackEditor.vue.d.ts +41 -3
- package/dist/components/ReagentList.vue.d.ts +1 -1
- package/dist/components/SampleSelector.vue.d.ts +5 -2
- package/dist/components/SegmentedControl.vue.d.ts +2 -0
- package/dist/components/SequenceInput.vue.d.ts +1 -1
- package/dist/components/SequenceProgressBar.vue.d.ts +15 -0
- package/dist/components/SettingsModal.vue.d.ts +3 -1
- package/dist/components/TagsInput.vue.d.ts +1 -1
- package/dist/components/WellPlate.vue.d.ts +42 -3
- package/dist/components/index.d.ts +5 -0
- package/dist/components/index.js +3 -3
- package/dist/{components-5KSfsVqf.js → components-BhK-dW99.js} +2091 -1051
- package/dist/components-BhK-dW99.js.map +1 -0
- package/dist/composables/experimentDesignData.d.ts +17 -0
- package/dist/composables/index.d.ts +2 -0
- package/dist/composables/index.js +4 -4
- package/dist/composables/useControlSchema.d.ts +11 -0
- package/dist/composables/useExperimentData.d.ts +11 -3
- package/dist/composables/useExperimentSamples.d.ts +42 -0
- package/dist/composables/usePlatformContext.d.ts +54 -0
- package/dist/{composables-D4Myb30a.js → composables-Bg7CFuNz.js} +5 -3
- package/dist/composables-Bg7CFuNz.js.map +1 -0
- package/dist/index.d.ts +4 -0
- package/dist/index.js +168 -6
- package/dist/index.js.map +1 -0
- package/dist/install.js +2 -2
- package/dist/instrument.d.ts +7 -0
- package/dist/lcms.d.ts +27 -0
- package/dist/permissions.d.ts +46 -0
- package/dist/stores/auth.d.ts +74 -2
- package/dist/stores/index.js +1 -1
- package/dist/styles.css +3316 -1216
- package/dist/templates/builders.d.ts +7 -3
- package/dist/templates/index.d.ts +2 -2
- package/dist/templates/index.js +2 -2
- package/dist/templates/presets.d.ts +12 -0
- package/dist/templates/types.d.ts +16 -1
- package/dist/{templates-BSlxwV2c.js → templates-BorLR_7p.js} +313 -3
- package/dist/templates-BorLR_7p.js.map +1 -0
- package/dist/types/auth.d.ts +2 -0
- package/dist/types/components.d.ts +32 -3
- package/dist/types/form-builder.d.ts +2 -1
- package/dist/types/index.d.ts +4 -1
- package/dist/types/instrument.d.ts +56 -0
- package/dist/types/platform.d.ts +3 -0
- package/dist/{useExperimentData-BbbdI5xT.js → useProtocolTemplates-n6AJqSqv.js} +534 -359
- package/dist/useProtocolTemplates-n6AJqSqv.js.map +1 -0
- package/dist/utils/rack.d.ts +47 -0
- package/package.json +1 -1
- package/src/__tests__/components/AppTopBar.test.ts +15 -0
- package/src/__tests__/components/BaseTabs.test.ts +15 -0
- package/src/__tests__/components/LcmsSequenceTable.test.ts +57 -0
- package/src/__tests__/components/ProgressBar.test.ts +18 -0
- package/src/__tests__/components/RackEditor.test.ts +125 -0
- package/src/__tests__/components/SampleSelector.test.ts +25 -0
- package/src/__tests__/components/SegmentedControl.test.ts +45 -0
- package/src/__tests__/components/SequenceProgressBar.test.ts +39 -0
- package/src/__tests__/components/SettingsModal.test.ts +83 -2
- package/src/__tests__/composables/useControlSchema.test.ts +4 -0
- package/src/__tests__/composables/useExperimentData.test.ts +23 -0
- package/src/__tests__/composables/useExperimentSamples.test.ts +91 -0
- package/src/__tests__/templates/templates.test.ts +86 -0
- package/src/__tests__/utils/instrument.test.ts +47 -0
- package/src/__tests__/utils/lcms.test.ts +73 -0
- package/src/__tests__/utils/permissions.test.ts +50 -0
- package/src/__tests__/utils/rack.test.ts +120 -0
- package/src/components/AppTopBar.vue +1 -0
- package/src/components/BaseTabs.vue +22 -1
- package/src/components/InstrumentAlertLog.vue +191 -0
- package/src/components/InstrumentStateBadge.vue +50 -0
- package/src/components/InstrumentStatusCard.vue +188 -0
- package/src/components/LcmsSequenceTable.vue +191 -0
- package/src/components/ProgressBar.vue +3 -0
- package/src/components/RackEditor.vue +73 -2
- package/src/components/SampleSelector.vue +28 -9
- package/src/components/SegmentedControl.story.vue +17 -0
- package/src/components/SegmentedControl.vue +14 -3
- package/src/components/SequenceProgressBar.vue +71 -0
- package/src/components/SettingsModal.vue +42 -2
- package/src/components/WellPlate.vue +142 -21
- package/src/components/index.ts +5 -0
- package/src/components/internal/WellEditPopupInternal.vue +1 -0
- package/src/composables/experimentDesignData.ts +182 -0
- package/src/composables/index.ts +14 -0
- package/src/composables/useAuth.ts +4 -0
- package/src/composables/useAutoGroup.ts +5 -1
- package/src/composables/useControlSchema.ts +21 -0
- package/src/composables/useExperimentData.ts +57 -16
- package/src/composables/useExperimentSamples.ts +142 -0
- package/src/index.ts +27 -0
- package/src/instrument.ts +90 -0
- package/src/lcms.ts +108 -0
- package/src/permissions.ts +143 -0
- package/src/stores/auth.ts +31 -3
- package/src/styles/components/instrument-monitor.css +478 -0
- package/src/styles/components/lcms-sequence-table.css +189 -0
- package/src/styles/components/sequence-progress-bar.css +63 -0
- package/src/styles/components/tabs.css +9 -0
- package/src/styles/components/well-edit-popup.css +7 -1
- package/src/styles/components/well-plate.css +5 -0
- package/src/styles/index.css +3 -0
- package/src/templates/builders.ts +201 -0
- package/src/templates/controlSchemas.ts +68 -0
- package/src/templates/index.ts +2 -0
- package/src/templates/presets.ts +23 -0
- package/src/templates/types.ts +17 -0
- package/src/types/auth.ts +3 -0
- package/src/types/components.ts +45 -3
- package/src/types/form-builder.ts +2 -1
- package/src/types/index.ts +35 -0
- package/src/types/instrument.ts +61 -0
- package/src/types/platform.ts +4 -0
- package/src/utils/rack.ts +209 -0
- package/dist/auth-CBG3bWEc.js.map +0 -1
- package/dist/components-5KSfsVqf.js.map +0 -1
- package/dist/composables-D4Myb30a.js.map +0 -1
- package/dist/templates-BSlxwV2c.js.map +0 -1
- package/dist/useExperimentData-BbbdI5xT.js.map +0 -1
package/dist/index.js
CHANGED
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@@ -1,8 +1,170 @@
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import { $ as
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import { $ as toSampleOptions, $n as
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import { $ as
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import {
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import { $ as PlateMapEditor_default, A as ReagentEditor_default, At as BasePill_default, B as Avatar_default, C as formatSequenceRemaining, Ct as IconButton_default, D as ScientificNumber_default, Dt as DataFrame_default, E as ChemicalFormula_default, Et as FormField_default, F as BioTemplateExperimentWorkspaceView_default, Ft as BaseButton_default, G as DoseDesignWorkspaceView_default, H as StatusIndicator_default, I as BioTemplateRenderer_default, J as ScheduleCalendar_default, K as ControlWorkspaceView_default, L as ChartContainer_default, M as RackEditor_default, Mt as BaseModal_default, N as BioTemplatePresetWorkspaceView_default, Nt as BaseTabs_default, O as ProtocolStepEditor_default, Ot as Calendar_default, P as BioTemplatePackWorkspaceView_default, Pt as ColorSlider_default, Q as ReagentList_default, R as Tooltip_default, S as formatSequenceEta, St as ThemeToggle_default, T as sequenceSamplesRemaining, Tt as AlertBox_default, U as Divider_default, V as ProgressBar_default, W as AppContainer_default, X as AutoGroupModal_default, Y as SampleSelector_default, Z as LoadingSpinner_default, _ as InstrumentStateBadge_default, _t as Skeleton_default, a as ExperimentDataViewer_default, at as AppLayout_default, b as estimateSequenceFinishDate, bt as SettingsModal_default, c as LcmsSequenceTable_default, ct as FormActions_default, d as extractLcmsCommonPrefix, dt as AppPluginSwitcher_default, et as SampleLegend_default, f as extractLcmsSampleName, ft as AppAvatarMenu_default, g as InstrumentStatusCard_default, gt as EmptyState_default, h as reconstructLcmsPlateCellsFromSequenceItems, ht as ExperimentCodeBadge_default, i as TimeRangeInput_default, it as PluginWorkspaceView_default, j as GroupAssigner_default, jt as SegmentedControl_default, k as SampleHierarchyTree_default, kt as DropdownButton_default, l as DEFAULT_LCMS_SEQUENCE_COLUMNS, lt as StepWizard_default, m as lcmsWellIdFromPosition, mt as ExperimentSelectorModal_default, n as FitPanel_default, nt as ExperimentTimeline_default, o as BatchProgressList_default, ot as AppSidebar_default, p as inferLcmsPlateTypeFromWellIds, pt as PluginIcon_default, q as ComponentBindingRenderer_default, r as ResourceCard_default, rt as DoseCalculator_default, s as AuditTrail_default, st as FormBuilder_default, tt as WellPlate_default, u as basenameFromWindowsPath, ut as AppTopBar_default, v as InstrumentAlertLog_default, vt as ExperimentPopover_default, w as sequenceProgressPercent, wt as AppToastContainer_default, x as estimateSequenceRemainingSeconds, xt as CollapsibleCard_default, y as SequenceProgressBar_default, yt as ConfirmDialog_default, z as Breadcrumb_default } from "./components-BhK-dW99.js";
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import { $ as toSampleOptions, $n as addMinutes, $t as validateSampleSheetData, A as toFlowPanelColumns, An as defineWellPlateDoseComponentBindings, At as createReagentListTemplate, B as toProtocolDataFrame, Bn as UnitInput_default, Bt as ensureTemplateFromCollection, C as toAssayMatrixRows, Cn as controlsToViewItems, Cr as BaseToggle_default, Ct as createFlowCytometryPanelTemplate, D as toCalibrationCurveRows, Dn as defineDoseCalculatorControlProps, Dr as BaseTextarea_default, Dt as createProtocolStepsTemplate, E as toCalibrationCurveDataFrame, En as defineControls, Et as createPlateMapTemplate, F as toInstrumentRunRows, Fn as useControlSchema, Ft as createTemplateEnvelope, G as toQpcrRows, Gn as FormulaInput_default, Gt as validateDoseResponseData, H as toProtocolSteps, Hn as MoleculeInput_default, Ht as getTemplateData, I as toInstrumentRunScheduleEvents, In as useControlWorkspace, It as createTimeCourseTemplate, J as toReagentDataFrame, Jn as DateTimePicker_default, Jt as validatePlateMapData, K as toQpcrWellPlateWells, Kn as ATOMIC_WEIGHTS, Kt as validateFlowCytometryPanelData, L as toInstrumentRunSteps, Ln as getFieldRegistryEntry, Lt as createWellPlateScreenCollection, M as toFlowPanelRows, Mn as getControlDefaults, Mt as createSampleSheetTemplate, N as toInstrumentRunColumns, Nn as getDefaultControlView, Nt as createTargetedMetabolomicsCollection, O as toDoseConditions, On as defineDoseDesignControlModel, Or as BaseInput_default, Ot as createQpcrExpressionCollection, P as toInstrumentRunDataFrame, Pt as createTemplateCollection, Q as toSampleDataFrame, Qn as TimePicker_default, Qt as validateSamplePrepData, R as toPlateMapEditorState, Rn as getTypeDefault, Rt as createWesternBlotAssayCollection, S as toAssayMatrixDataFrame, Sn as controlsToViewIds, Sr as BaseRadioGroup_default, St as createFlowCytometryAssayCollection, T as toCalibrationCurveColumns, Tn as defineControlModel, Tr as BaseSelect_default, Tt as createLcmsBatchCollection, U as toQpcrColumns, Un as SequenceInput_default, Ut as validateAssayMatrixData, V as toProtocolRows, Vn as useConcentrationUnits, Vt as extractTemplateCollection, W as toQpcrDataFrame, Wn as useSequenceUtils, Wt as validateCalibrationCurveData, X as toReagentRows, Xn as NumberInput_default, Xt as validateQpcrPlateData, Y as toReagentListItems, Yn as FileUploader_default, Yt as validateProtocolStepsData, Z as toSampleColumns, Zn as TagsInput_default, Zt as validateReagentListData, _n as controlsToSectionFormSchema, _r as MultiSelect_default, _t as createBioTemplatePresetCollectionFromControls, a as getBioTemplateControlDefaults, an as bioTemplatePacks, ar as formatTime, at as toTimeCourseColumns, b as toBioTemplateComponentUsage, bn as controlsToSidebarPanels, br as useEventListener, bt as createDoseResponseTemplate, c as listBioTemplatePresetControlSchemas, cn as searchBioTemplatePacks, cr as generateTimeSlots, ct as toTimeCourseSteps, dn as listBioTemplateCatalog, dr as rangesOverlap, dt as TEMPLATE_COLLECTION_KEY, en as validateTimeCourseData, er as compareTime, et as toSamplePrepColumns, f as listBioTemplateComponentBindings, fn as searchBioTemplateCatalog, fr as snapToSlot, ft as assertTemplateEnvelope, g as toBioTemplateComponentProps, gn as controlsToFormSchema, gt as createBioTemplatePresetCollection, h as toBioTemplateComponentImports, hn as controlValuesToComponentProps, hr as DatePicker_default, ht as createBioTemplatePackCollection, i as createBioTemplateControlToolkit, in as searchBioTemplatePresets, ir as formatDuration, it as toTemplateDataFrame, j as toFlowPanelDataFrame, jn as defineWellPlateDoseControlProps, jt as createSamplePrepTemplate, k as toDoseLayoutState, kn as defineWellPlateControlProps, kt as createQpcrPlateTemplate, l as requireBioTemplateControlSchema, ln as bioTemplateCatalog, lr as isTimeInRange, lt as toWellMapArray, m as toBioTemplateComponentBindingsById, mn as controlValuesToComponentBindingsById, mr as useTimeUtils, mt as createAssayMatrixTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as getBioTemplatePresetInfo, nr as findAvailableSlots, nt as toSamplePrepRows, o as getBioTemplateControlSchema, on as getBioTemplatePackInfo, or as formatTimeSlot, ot as toTimeCourseDataFrame, p as toBioTemplateComponentBindings, pn as controlValuesToComponentBindings, pr as toMinutes, pt as bioTemplatePresetControlValuesToOptions, q as toReagentColumns, qn as useChemicalFormula, qt as validateInstrumentRunData, r as bioTemplateControlsToSidebarPanels, rn as listBioTemplatePresets, rr as findNearestTimeSlotIndex, rt as toSampleRows, s as listBioTemplateControlSchemas, sn as listBioTemplatePacks, sr as fromMinutes, st as toTimeCourseRows, t as bioTemplateControlsToFormSchema, tn as bioTemplatePresets, tr as durationMinutes, tt as toSamplePrepDataFrame, u as getBioTemplateComponentBindings, un as getBioTemplateInfo, ur as parseTime, ut as toWellPlateWells, v as toBioTemplateComponentPropsById, vn as controlsToSectionFormSchemas, vr as useListSelection, vt as createCalibrationCurveTemplate, w as toAssayMatrixSampleOptions, wn as defineControlComponentBindings, wr as BaseCheckbox_default, wt as createInstrumentRunTemplate, x as toAssayMatrixColumns, xn as controlsToTopBarSettingsConfig, xr as BaseSlider_default, xt as createElisaAssayCollection, y as toBioTemplateComponentSnippets, yn as controlsToSettingsSchema, yr as useSelectionLimit, yt as createDefaultBioTemplate, z as toProtocolColumns, zn as ConcentrationInput_default, zt as ensureTemplateEnvelope } from "./templates-BorLR_7p.js";
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import { $ as usePlatformContext, B as useRequestSyncState, C as useExpansionSet, D as hslToHex, E as hexToHsl, F as useWellPlateEditor, G as EXPERIMENT_STATUS_OPTIONS, H as useApi, I as useDoseCalculator, J as datePresetToISO, K as EXPERIMENT_STATUS_VARIANT_MAP, L as APP_EXPERIMENT_KEY, M as extractSampleNamesFromDesignData, N as extractSampleOptionsFromDesignData, O as DEFAULT_COLORS, P as unwrapExperimentDesignData, Q as resolveExperimentCode, R as useAppExperiment, T as deriveShade, U as DATE_PRESET_OPTIONS, V as useDebouncedWatch, W as EXPERIMENT_STATUS_LABELS, X as formatExperimentStatus, Y as formatExperimentDate, Z as getExperimentStatusVariant, _ as useScheduleDrag, a as useReagentSeries, at as candidateMatchesSearch, c as useBioTemplatePresetWorkspace, ct as compareSortValues, d as getBioTemplateComponentProps, et as evaluateCondition, f as toBioTemplateComponentPropsByComponent, g as useExperimentSave, h as useTemplateCollection, i as generateDilutionSeries, it as useToast, j as useAutoGroup, k as extractSamplesFromDesignData, l as useBioTemplatePackWorkspace, lt as useSortedItems, m as useBioTemplateControls, n as DEFAULT_PRESETS, nt as useForm, o as useGroupAssignment, ot as normalizeSearchQuery, p as useBioTemplateComponents, q as SORT_OPTIONS, r as DEFAULT_UNITS, rt as useTheme, s as useRackEditor, st as useTextSearch, t as useProtocolTemplates, tt as useFormBuilder, u as useBioTemplateWorkspace, v as useExperimentSamples, w as useSampleGroups, y as useExperimentData, z as useExperimentSelector } from "./useProtocolTemplates-n6AJqSqv.js";
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import { a as canAccessByPolicy, c as getRoleInfo, d as hasAnyPermission, f as isAdminRole, g as useSettingsStore, h as colorPalettes, i as canAccessAdmin, l as getUserPermissions, m as normalizeAccessPolicy, n as ADMIN_PANEL_PERMISSIONS, o as canAccessPlugin, p as isAdminUser, r as ADMIN_ROLE, s as getAccessAudience, t as useAuthStore, u as hasAllPermissions } from "./auth-B7g4J4ZF.js";
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import { MINTSdk } from "./install.js";
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import { a as useCurrentExperiment, c as usePluginConfig, d as usePasskey, f as useAuth, i as resolvePluginBaseUrl, l as useAsync, n as createPluginClient, o as usePluginClient, r as getPluginPageSelectorItems, s as usePluginSettings, t as buildPluginEndpointUrl, u as useAsyncBatch } from "./composables-
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import { a as useCurrentExperiment, c as usePluginConfig, d as usePasskey, f as useAuth, i as resolvePluginBaseUrl, l as useAsync, n as createPluginClient, o as usePluginClient, r as getPluginPageSelectorItems, s as usePluginSettings, t as buildPluginEndpointUrl, u as useAsyncBatch } from "./composables-Bg7CFuNz.js";
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import "./stores/index.js";
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//#region src/utils/rack.ts
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var LCMS_DEFAULT_CONTROL_POSITIONS = {
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"96well": {
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blank: {
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row: "H",
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column: 12
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},
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qc: {
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row: "H",
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column: 11
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},
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iqc: {
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row: "H",
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column: 10
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}
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},
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"54vial": {
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blank: {
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row: "F",
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column: 9
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},
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qc: {
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row: "F",
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column: 8
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},
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iqc: {
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row: "F",
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column: 7
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}
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}
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};
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var SLOT_ORDER = [
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"R",
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"G",
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"B",
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"Y"
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];
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function lcmsPlateTypeToRackFormat(plateType) {
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return plateType === "96well" ? 96 : 54;
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}
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function rackFormatToLcmsPlateType(format) {
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if (format === 96) return "96well";
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if (format === 54) return "54vial";
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throw new Error(`LCMS plate cells support only 54-vial racks and 96-well plates; received format ${format}.`);
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}
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function lcmsWellId(row, column) {
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return `${row.toUpperCase()}${column}`;
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}
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function parseLcmsWellId(wellId) {
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const match = /^([A-Za-z]+)(\d+)$/.exec(wellId.trim());
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if (!match) throw new Error(`Invalid well id "${wellId}". Expected a row letter followed by a column number, e.g. A1.`);
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return {
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row: match[1].toUpperCase(),
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column: Number(match[2])
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};
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}
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function lcmsPlateCellsToRack(cells, options = {}) {
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const format = options.format ?? (options.plateType ? lcmsPlateTypeToRackFormat(options.plateType) : inferRackFormat(cells));
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const slot = options.slot ?? cells.find((cell) => cell.slot)?.slot ?? "R";
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const injectionVolume = options.injectionVolume ?? inferInjectionVolume(cells) ?? 5;
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return {
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id: options.rackId ?? `rack-${slot}`,
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name: options.rackName ?? `Rack ${slot}`,
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format,
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slot,
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injectionVolume,
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wells: Object.fromEntries(cells.filter((cell) => cell.sample_name.trim()).map((cell) => {
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const wellId = lcmsWellId(cell.row, cell.column);
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return [wellId, {
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id: wellId,
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row: rowIndex(cell.row),
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col: cell.column - 1,
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state: "filled",
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sampleType: cell.sample_type ?? "sample",
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metadata: {
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label: cell.sample_name.trim(),
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injectionVolume: cell.injection_volume ?? injectionVolume,
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injectionCount: cell.injection_count ?? 1,
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customMethod: cell.custom_method ?? null
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}
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}];
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}))
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};
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}
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function lcmsPlateCellsToRacks(cells, options = {}) {
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const bySlot = /* @__PURE__ */ new Map();
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const defaultSlot = options.defaultSlot ?? "R";
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for (const cell of cells) {
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const slotCells = bySlot.get(slot) ?? [];
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slotCells.push(cell);
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bySlot.set(slot, slotCells);
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return Array.from(bySlot.entries()).sort(([a], [b]) => SLOT_ORDER.indexOf(a) - SLOT_ORDER.indexOf(b)).map(([slot, slotCells], index) => lcmsPlateCellsToRack(slotCells, {
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...options,
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slot,
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rackId: options.rackId?.(slot, index) ?? `rack-${slot}`,
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rackName: options.rackName?.(slot, index) ?? `Rack ${slot}`
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}));
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}
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function rackToLcmsPlateCells(rack) {
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return Object.entries(rack.wells).map(([wellId, well]) => wellToLcmsPlateCell(rack, wellId, well)).filter((cell) => cell !== null).sort(comparePlateCells);
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}
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function racksToLcmsPlateCells(racks) {
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return racks.flatMap(rackToLcmsPlateCells);
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}
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function getLcmsDefaultControlWellId(plateType, sampleType) {
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const position = LCMS_DEFAULT_CONTROL_POSITIONS[plateType][sampleType];
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return lcmsWellId(position.row, position.column);
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}
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function createLcmsControlWellEditData(sampleType, options = {}) {
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const plateType = options.plateType ?? "54vial";
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return {
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wellId: options.wellId ?? getLcmsDefaultControlWellId(plateType, sampleType),
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label: sampleType === "blank" ? "Blank" : sampleType.toUpperCase(),
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sampleType,
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injectionVolume: options.injectionVolume ?? 5,
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injectionCount: 1,
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customMethod: ""
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};
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}
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function wellToLcmsPlateCell(rack, wellId, well) {
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const metadata = well.metadata ?? {};
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const label = getString(metadata.label);
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if (!label) return null;
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const parsed = parseLcmsWellId(well.id ?? wellId);
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return {
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row: parsed.row,
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column: parsed.column,
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sample_name: label,
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sample_type: well.sampleType ?? null,
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injection_volume: getNumber(metadata.injectionVolume) ?? rack.injectionVolume,
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injection_count: getNumber(metadata.injectionCount) ?? 1,
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custom_method: getNullableString(metadata.customMethod),
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slot: rack.slot
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};
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}
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function inferRackFormat(cells) {
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return cells.some((cell) => rowIndex(cell.row) > 5 || cell.column > 9) ? 96 : 54;
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}
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function inferInjectionVolume(cells) {
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return cells.find((cell) => typeof cell.injection_volume === "number")?.injection_volume ?? void 0;
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}
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function rowIndex(row) {
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return row.toUpperCase().charCodeAt(0) - 65;
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}
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function getString(value) {
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return typeof value === "string" && value.trim() ? value.trim() : void 0;
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}
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function getNullableString(value) {
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return typeof value === "string" && value.trim() ? value.trim() : null;
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}
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function getNumber(value) {
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return typeof value === "number" && Number.isFinite(value) ? value : void 0;
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}
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function comparePlateCells(a, b) {
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const rowDiff = rowIndex(a.row) - rowIndex(b.row);
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return rowDiff === 0 ? a.column - b.column : rowDiff;
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}
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//#endregion
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export { ADMIN_PANEL_PERMISSIONS, ADMIN_ROLE, APP_EXPERIMENT_KEY, ATOMIC_WEIGHTS, AlertBox_default as AlertBox, AppAvatarMenu_default as AppAvatarMenu, AppContainer_default as AppContainer, AppLayout_default as AppLayout, AppPluginSwitcher_default as AppPluginSwitcher, AppSidebar_default as AppSidebar, AppToastContainer_default as AppToastContainer, AppTopBar_default as AppTopBar, AuditTrail_default as AuditTrail, AutoGroupModal_default as AutoGroupModal, Avatar_default as Avatar, BaseButton_default as BaseButton, BaseCheckbox_default as BaseCheckbox, BaseInput_default as BaseInput, BaseModal_default as BaseModal, BasePill_default as BasePill, BaseRadioGroup_default as BaseRadioGroup, BaseSelect_default as BaseSelect, BaseSlider_default as BaseSlider, BaseTabs_default as BaseTabs, BaseTextarea_default as BaseTextarea, BaseToggle_default as BaseToggle, BatchProgressList_default as BatchProgressList, BioTemplateExperimentWorkspaceView_default as BioTemplateExperimentWorkspaceView, BioTemplatePackWorkspaceView_default as BioTemplatePackWorkspaceView, BioTemplatePresetWorkspaceView_default as BioTemplatePresetWorkspaceView, BioTemplateRenderer_default as BioTemplateRenderer, Breadcrumb_default as Breadcrumb, Calendar_default as Calendar, ChartContainer_default as ChartContainer, ChemicalFormula_default as ChemicalFormula, CollapsibleCard_default as CollapsibleCard, ColorSlider_default as ColorSlider, ComponentBindingRenderer_default as ComponentBindingRenderer, ConcentrationInput_default as ConcentrationInput, ConfirmDialog_default as ConfirmDialog, ControlWorkspaceView_default as ControlWorkspaceView, DATE_PRESET_OPTIONS, DEFAULT_COLORS, DEFAULT_LCMS_SEQUENCE_COLUMNS, DEFAULT_PRESETS, DEFAULT_UNITS, DataFrame_default as DataFrame, DatePicker_default as DatePicker, DateTimePicker_default as DateTimePicker, Divider_default as Divider, DoseCalculator_default as DoseCalculator, DoseDesignWorkspaceView_default as DoseDesignWorkspaceView, DropdownButton_default as DropdownButton, EXPERIMENT_STATUS_LABELS, EXPERIMENT_STATUS_OPTIONS, EXPERIMENT_STATUS_VARIANT_MAP, EmptyState_default as EmptyState, ExperimentCodeBadge_default as ExperimentCodeBadge, ExperimentDataViewer_default as ExperimentDataViewer, ExperimentPopover_default as ExperimentPopover, ExperimentSelectorModal_default as ExperimentSelectorModal, ExperimentTimeline_default as ExperimentTimeline, FileUploader_default as FileUploader, FitPanel_default as FitPanel, FormActions_default as FormActions, FormBuilder_default as FormBuilder, FormField_default as FormField, FormulaInput_default as FormulaInput, GroupAssigner_default as GroupAssigner, IconButton_default as IconButton, InstrumentAlertLog_default as InstrumentAlertLog, InstrumentStateBadge_default as InstrumentStateBadge, InstrumentStatusCard_default as InstrumentStatusCard, LCMS_DEFAULT_CONTROL_POSITIONS, LcmsSequenceTable_default as LcmsSequenceTable, LoadingSpinner_default as LoadingSpinner, MINTSdk, MINTSdk as default, MoleculeInput_default as MoleculeInput, MultiSelect_default as MultiSelect, NumberInput_default as NumberInput, PlateMapEditor_default as PlateMapEditor, PluginIcon_default as PluginIcon, PluginWorkspaceView_default as PluginWorkspaceView, ProgressBar_default as ProgressBar, ProtocolStepEditor_default as ProtocolStepEditor, RackEditor_default as RackEditor, ReagentEditor_default as ReagentEditor, ReagentList_default as ReagentList, ResourceCard_default as ResourceCard, SORT_OPTIONS, SampleHierarchyTree_default as SampleHierarchyTree, SampleLegend_default as SampleLegend, SampleSelector_default as SampleSelector, ScheduleCalendar_default as ScheduleCalendar, ScientificNumber_default as ScientificNumber, SegmentedControl_default as SegmentedControl, SequenceInput_default as SequenceInput, SequenceProgressBar_default as SequenceProgressBar, SettingsModal_default as SettingsModal, Skeleton_default as Skeleton, StatusIndicator_default as StatusIndicator, StepWizard_default as StepWizard, TEMPLATE_COLLECTION_KEY, TagsInput_default as TagsInput, ThemeToggle_default as ThemeToggle, TimePicker_default as TimePicker, TimeRangeInput_default as TimeRangeInput, Tooltip_default as Tooltip, UnitInput_default as UnitInput, WellPlate_default as WellPlate, addMinutes, assertTemplateEnvelope, basenameFromWindowsPath, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, buildPluginEndpointUrl, canAccessAdmin, canAccessByPolicy, canAccessPlugin, candidateMatchesSearch, colorPalettes, compareSortValues, compareTime, controlValuesToComponentBindings, controlValuesToComponentBindingsById, controlValuesToComponentProps, controlsToFormSchema, controlsToSectionFormSchema, controlsToSectionFormSchemas, controlsToSettingsSchema, controlsToSidebarPanels, controlsToTopBarSettingsConfig, controlsToViewIds, controlsToViewItems, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createLcmsControlWellEditData, createPlateMapTemplate, createPluginClient, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, datePresetToISO, defineControlComponentBindings, defineControlModel, defineControls, defineDoseCalculatorControlProps, defineDoseDesignControlModel, defineWellPlateControlProps, defineWellPlateDoseComponentBindings, defineWellPlateDoseControlProps, deriveShade, durationMinutes, ensureTemplateEnvelope, ensureTemplateFromCollection, estimateSequenceFinishDate, estimateSequenceRemainingSeconds, evaluateCondition, extractLcmsCommonPrefix, extractLcmsSampleName, extractSampleNamesFromDesignData, extractSampleOptionsFromDesignData, extractSamplesFromDesignData, extractTemplateCollection, findAvailableSlots, findNearestTimeSlotIndex, formatDuration, formatExperimentDate, formatExperimentStatus, formatSequenceEta, formatSequenceRemaining, formatTime, formatTimeSlot, fromMinutes, generateDilutionSeries, generateTimeSlots, getAccessAudience, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getControlDefaults, getDefaultControlView, getExperimentStatusVariant, getFieldRegistryEntry, getLcmsDefaultControlWellId, getPluginPageSelectorItems, getRoleInfo, getTemplateData, getTypeDefault, getUserPermissions, hasAllPermissions, hasAnyPermission, hexToHsl, hslToHex, inferLcmsPlateTypeFromWellIds, isAdminRole, isAdminUser, isTimeInRange, lcmsPlateCellsToRack, lcmsPlateCellsToRacks, lcmsPlateTypeToRackFormat, lcmsWellId, lcmsWellIdFromPosition, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, normalizeAccessPolicy, normalizeSearchQuery, parseLcmsWellId, parseTime, rackFormatToLcmsPlateType, rackToLcmsPlateCells, racksToLcmsPlateCells, rangesOverlap, reconstructLcmsPlateCellsFromSequenceItems, requireBioTemplateControlSchema, resolveExperimentCode, resolvePluginBaseUrl, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, sequenceProgressPercent, sequenceSamplesRemaining, snapToSlot, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toMinutes, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, unwrapExperimentDesignData, useApi, useAppExperiment, useAsync, useAsyncBatch, useAuth, useAuthStore, useAutoGroup, useBioTemplateComponents, useBioTemplateControls, useBioTemplatePackWorkspace, useBioTemplatePresetWorkspace, useBioTemplateWorkspace, useChemicalFormula, useConcentrationUnits, useControlSchema, useControlWorkspace, useCurrentExperiment, useDebouncedWatch, useDoseCalculator, useEventListener, useExpansionSet, useExperimentData, useExperimentSamples, useExperimentSave, useExperimentSelector, useForm, useFormBuilder, useGroupAssignment, useListSelection, usePasskey, usePlatformContext, usePluginClient, usePluginConfig, usePluginSettings, useProtocolTemplates, useRackEditor, useReagentSeries, useRequestSyncState, useSampleGroups, useScheduleDrag, useSelectionLimit, useSequenceUtils, useSettingsStore, useSortedItems, useTemplateCollection, useTextSearch, useTheme, useTimeUtils, useToast, useWellPlateEditor, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };
|
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//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
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|
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{"version":3,"file":"index.js","names":[],"sources":["../src/utils/rack.ts"],"sourcesContent":["import type { Rack, SlotPosition, Well, WellEditData, WellPlateFormat } from '../types'\n\nexport type LcmsPlateType = '96well' | '54vial'\nexport type LcmsControlSampleType = 'blank' | 'qc' | 'iqc'\n\nexport interface LcmsPlateCell {\n row: string\n column: number\n sample_name: string\n sample_type?: string | null\n injection_volume?: number | null\n injection_count?: number | null\n custom_method?: string | null\n slot?: SlotPosition | null\n}\n\nexport interface LcmsPlateCellsToRackOptions {\n rackId?: string\n rackName?: string\n format?: WellPlateFormat\n plateType?: LcmsPlateType\n slot?: SlotPosition\n injectionVolume?: number\n}\n\nexport interface LcmsPlateCellsToRacksOptions extends Omit<LcmsPlateCellsToRackOptions, 'rackId' | 'rackName' | 'slot'> {\n defaultSlot?: SlotPosition\n rackId?: (slot: SlotPosition, index: number) => string\n rackName?: (slot: SlotPosition, index: number) => string\n}\n\nexport const LCMS_DEFAULT_CONTROL_POSITIONS: Record<LcmsPlateType, Record<LcmsControlSampleType, { row: string; column: number }>> = {\n '96well': {\n blank: { row: 'H', column: 12 },\n qc: { row: 'H', column: 11 },\n iqc: { row: 'H', column: 10 },\n },\n '54vial': {\n blank: { row: 'F', column: 9 },\n qc: { row: 'F', column: 8 },\n iqc: { row: 'F', column: 7 },\n },\n}\n\nconst SLOT_ORDER: SlotPosition[] = ['R', 'G', 'B', 'Y']\n\nexport function lcmsPlateTypeToRackFormat(plateType: LcmsPlateType): WellPlateFormat {\n return plateType === '96well' ? 96 : 54\n}\n\nexport function rackFormatToLcmsPlateType(format: WellPlateFormat): LcmsPlateType {\n if (format === 96) return '96well'\n if (format === 54) return '54vial'\n throw new Error(`LCMS plate cells support only 54-vial racks and 96-well plates; received format ${format}.`)\n}\n\nexport function lcmsWellId(row: string, column: number): string {\n return `${row.toUpperCase()}${column}`\n}\n\nexport function parseLcmsWellId(wellId: string): { row: string; column: number } {\n const match = /^([A-Za-z]+)(\\d+)$/.exec(wellId.trim())\n if (!match) {\n throw new Error(`Invalid well id \"${wellId}\". Expected a row letter followed by a column number, e.g. A1.`)\n }\n\n return {\n row: match[1].toUpperCase(),\n column: Number(match[2]),\n }\n}\n\nexport function lcmsPlateCellsToRack(cells: LcmsPlateCell[], options: LcmsPlateCellsToRackOptions = {}): Rack {\n const format = options.format ?? (options.plateType ? lcmsPlateTypeToRackFormat(options.plateType) : inferRackFormat(cells))\n const slot = options.slot ?? cells.find(cell => cell.slot)?.slot ?? 'R'\n const injectionVolume = options.injectionVolume ?? inferInjectionVolume(cells) ?? 5\n\n return {\n id: options.rackId ?? `rack-${slot}`,\n name: options.rackName ?? `Rack ${slot}`,\n format,\n slot,\n injectionVolume,\n wells: Object.fromEntries(\n cells\n .filter(cell => cell.sample_name.trim())\n .map((cell) => {\n const wellId = lcmsWellId(cell.row, cell.column)\n const well: Partial<Well> = {\n id: wellId,\n row: rowIndex(cell.row),\n col: cell.column - 1,\n state: 'filled',\n sampleType: cell.sample_type ?? 'sample',\n metadata: {\n label: cell.sample_name.trim(),\n injectionVolume: cell.injection_volume ?? injectionVolume,\n injectionCount: cell.injection_count ?? 1,\n customMethod: cell.custom_method ?? null,\n },\n }\n return [wellId, well]\n }),\n ),\n }\n}\n\nexport function lcmsPlateCellsToRacks(cells: LcmsPlateCell[], options: LcmsPlateCellsToRacksOptions = {}): Rack[] {\n const bySlot = new Map<SlotPosition, LcmsPlateCell[]>()\n const defaultSlot = options.defaultSlot ?? 'R'\n\n for (const cell of cells) {\n const slot = cell.slot ?? defaultSlot\n const slotCells = bySlot.get(slot) ?? []\n slotCells.push(cell)\n bySlot.set(slot, slotCells)\n }\n\n return Array.from(bySlot.entries())\n .sort(([a], [b]) => SLOT_ORDER.indexOf(a) - SLOT_ORDER.indexOf(b))\n .map(([slot, slotCells], index) => lcmsPlateCellsToRack(slotCells, {\n ...options,\n slot,\n rackId: options.rackId?.(slot, index) ?? `rack-${slot}`,\n rackName: options.rackName?.(slot, index) ?? `Rack ${slot}`,\n }))\n}\n\nexport function rackToLcmsPlateCells(rack: Rack): LcmsPlateCell[] {\n return Object.entries(rack.wells)\n .map(([wellId, well]) => wellToLcmsPlateCell(rack, wellId, well))\n .filter((cell): cell is LcmsPlateCell => cell !== null)\n .sort(comparePlateCells)\n}\n\nexport function racksToLcmsPlateCells(racks: Rack[]): LcmsPlateCell[] {\n return racks.flatMap(rackToLcmsPlateCells)\n}\n\nexport function getLcmsDefaultControlWellId(plateType: LcmsPlateType, sampleType: LcmsControlSampleType): string {\n const position = LCMS_DEFAULT_CONTROL_POSITIONS[plateType][sampleType]\n return lcmsWellId(position.row, position.column)\n}\n\nexport function createLcmsControlWellEditData(\n sampleType: LcmsControlSampleType,\n options: {\n wellId?: string\n plateType?: LcmsPlateType\n injectionVolume?: number\n } = {},\n): WellEditData {\n const plateType = options.plateType ?? '54vial'\n return {\n wellId: options.wellId ?? getLcmsDefaultControlWellId(plateType, sampleType),\n label: sampleType === 'blank' ? 'Blank' : sampleType.toUpperCase(),\n sampleType,\n injectionVolume: options.injectionVolume ?? 5,\n injectionCount: 1,\n customMethod: '',\n }\n}\n\nfunction wellToLcmsPlateCell(rack: Rack, wellId: string, well: Partial<Well>): LcmsPlateCell | null {\n const metadata = well.metadata ?? {}\n const label = getString(metadata.label)\n if (!label) return null\n\n const parsed = parseLcmsWellId(well.id ?? wellId)\n return {\n row: parsed.row,\n column: parsed.column,\n sample_name: label,\n sample_type: well.sampleType ?? null,\n injection_volume: getNumber(metadata.injectionVolume) ?? rack.injectionVolume,\n injection_count: getNumber(metadata.injectionCount) ?? 1,\n custom_method: getNullableString(metadata.customMethod),\n slot: rack.slot,\n }\n}\n\nfunction inferRackFormat(cells: LcmsPlateCell[]): WellPlateFormat {\n return cells.some(cell => rowIndex(cell.row) > 5 || cell.column > 9) ? 96 : 54\n}\n\nfunction inferInjectionVolume(cells: LcmsPlateCell[]): number | undefined {\n return cells.find(cell => typeof cell.injection_volume === 'number')?.injection_volume ?? undefined\n}\n\nfunction rowIndex(row: string): number {\n return row.toUpperCase().charCodeAt(0) - 65\n}\n\nfunction getString(value: unknown): string | undefined {\n return typeof value === 'string' && value.trim() ? value.trim() : undefined\n}\n\nfunction getNullableString(value: unknown): string | null {\n return typeof value === 'string' && value.trim() ? value.trim() : null\n}\n\nfunction getNumber(value: unknown): number | undefined {\n return typeof value === 'number' && Number.isFinite(value) ? value : undefined\n}\n\nfunction comparePlateCells(a: LcmsPlateCell, b: LcmsPlateCell): number {\n const rowDiff = rowIndex(a.row) - rowIndex(b.row)\n return rowDiff === 0 ? a.column - b.column : rowDiff\n}\n"],"mappings":";;;;;;;;AA+BA,IAAa,iCAAwH;CACnI,UAAU;EACR,OAAO;GAAE,KAAK;GAAK,QAAQ;GAAI;EAC/B,IAAI;GAAE,KAAK;GAAK,QAAQ;GAAI;EAC5B,KAAK;GAAE,KAAK;GAAK,QAAQ;GAAI;EAC9B;CACD,UAAU;EACR,OAAO;GAAE,KAAK;GAAK,QAAQ;GAAG;EAC9B,IAAI;GAAE,KAAK;GAAK,QAAQ;GAAG;EAC3B,KAAK;GAAE,KAAK;GAAK,QAAQ;GAAG;EAC7B;CACF;AAED,IAAM,aAA6B;CAAC;CAAK;CAAK;CAAK;CAAI;AAEvD,SAAgB,0BAA0B,WAA2C;AACnF,QAAO,cAAc,WAAW,KAAK;;AAGvC,SAAgB,0BAA0B,QAAwC;AAChF,KAAI,WAAW,GAAI,QAAO;AAC1B,KAAI,WAAW,GAAI,QAAO;AAC1B,OAAM,IAAI,MAAM,mFAAmF,OAAO,GAAG;;AAG/G,SAAgB,WAAW,KAAa,QAAwB;AAC9D,QAAO,GAAG,IAAI,aAAa,GAAG;;AAGhC,SAAgB,gBAAgB,QAAiD;CAC/E,MAAM,QAAQ,qBAAqB,KAAK,OAAO,MAAM,CAAC;AACtD,KAAI,CAAC,MACH,OAAM,IAAI,MAAM,oBAAoB,OAAO,gEAAgE;AAG7G,QAAO;EACL,KAAK,MAAM,GAAG,aAAa;EAC3B,QAAQ,OAAO,MAAM,GAAG;EACzB;;AAGH,SAAgB,qBAAqB,OAAwB,UAAuC,EAAE,EAAQ;CAC5G,MAAM,SAAS,QAAQ,WAAW,QAAQ,YAAY,0BAA0B,QAAQ,UAAU,GAAG,gBAAgB,MAAM;CAC3H,MAAM,OAAO,QAAQ,QAAQ,MAAM,MAAK,SAAQ,KAAK,KAAK,EAAE,QAAQ;CACpE,MAAM,kBAAkB,QAAQ,mBAAmB,qBAAqB,MAAM,IAAI;AAElF,QAAO;EACL,IAAI,QAAQ,UAAU,QAAQ;EAC9B,MAAM,QAAQ,YAAY,QAAQ;EAClC;EACA;EACA;EACA,OAAO,OAAO,YACZ,MACG,QAAO,SAAQ,KAAK,YAAY,MAAM,CAAC,CACvC,KAAK,SAAS;GACb,MAAM,SAAS,WAAW,KAAK,KAAK,KAAK,OAAO;AAchD,UAAO,CAAC,QAboB;IAC1B,IAAI;IACJ,KAAK,SAAS,KAAK,IAAI;IACvB,KAAK,KAAK,SAAS;IACnB,OAAO;IACP,YAAY,KAAK,eAAe;IAChC,UAAU;KACR,OAAO,KAAK,YAAY,MAAM;KAC9B,iBAAiB,KAAK,oBAAoB;KAC1C,gBAAgB,KAAK,mBAAmB;KACxC,cAAc,KAAK,iBAAiB;KACrC;IACF,CACoB;IACrB,CACL;EACF;;AAGH,SAAgB,sBAAsB,OAAwB,UAAwC,EAAE,EAAU;CAChH,MAAM,yBAAS,IAAI,KAAoC;CACvD,MAAM,cAAc,QAAQ,eAAe;AAE3C,MAAK,MAAM,QAAQ,OAAO;EACxB,MAAM,OAAO,KAAK,QAAQ;EAC1B,MAAM,YAAY,OAAO,IAAI,KAAK,IAAI,EAAE;AACxC,YAAU,KAAK,KAAK;AACpB,SAAO,IAAI,MAAM,UAAU;;AAG7B,QAAO,MAAM,KAAK,OAAO,SAAS,CAAC,CAChC,MAAM,CAAC,IAAI,CAAC,OAAO,WAAW,QAAQ,EAAE,GAAG,WAAW,QAAQ,EAAE,CAAC,CACjE,KAAK,CAAC,MAAM,YAAY,UAAU,qBAAqB,WAAW;EACjE,GAAG;EACH;EACA,QAAQ,QAAQ,SAAS,MAAM,MAAM,IAAI,QAAQ;EACjD,UAAU,QAAQ,WAAW,MAAM,MAAM,IAAI,QAAQ;EACtD,CAAC,CAAC;;AAGP,SAAgB,qBAAqB,MAA6B;AAChE,QAAO,OAAO,QAAQ,KAAK,MAAM,CAC9B,KAAK,CAAC,QAAQ,UAAU,oBAAoB,MAAM,QAAQ,KAAK,CAAC,CAChE,QAAQ,SAAgC,SAAS,KAAK,CACtD,KAAK,kBAAkB;;AAG5B,SAAgB,sBAAsB,OAAgC;AACpE,QAAO,MAAM,QAAQ,qBAAqB;;AAG5C,SAAgB,4BAA4B,WAA0B,YAA2C;CAC/G,MAAM,WAAW,+BAA+B,WAAW;AAC3D,QAAO,WAAW,SAAS,KAAK,SAAS,OAAO;;AAGlD,SAAgB,8BACd,YACA,UAII,EAAE,EACQ;CACd,MAAM,YAAY,QAAQ,aAAa;AACvC,QAAO;EACL,QAAQ,QAAQ,UAAU,4BAA4B,WAAW,WAAW;EAC5E,OAAO,eAAe,UAAU,UAAU,WAAW,aAAa;EAClE;EACA,iBAAiB,QAAQ,mBAAmB;EAC5C,gBAAgB;EAChB,cAAc;EACf;;AAGH,SAAS,oBAAoB,MAAY,QAAgB,MAA2C;CAClG,MAAM,WAAW,KAAK,YAAY,EAAE;CACpC,MAAM,QAAQ,UAAU,SAAS,MAAM;AACvC,KAAI,CAAC,MAAO,QAAO;CAEnB,MAAM,SAAS,gBAAgB,KAAK,MAAM,OAAO;AACjD,QAAO;EACL,KAAK,OAAO;EACZ,QAAQ,OAAO;EACf,aAAa;EACb,aAAa,KAAK,cAAc;EAChC,kBAAkB,UAAU,SAAS,gBAAgB,IAAI,KAAK;EAC9D,iBAAiB,UAAU,SAAS,eAAe,IAAI;EACvD,eAAe,kBAAkB,SAAS,aAAa;EACvD,MAAM,KAAK;EACZ;;AAGH,SAAS,gBAAgB,OAAyC;AAChE,QAAO,MAAM,MAAK,SAAQ,SAAS,KAAK,IAAI,GAAG,KAAK,KAAK,SAAS,EAAE,GAAG,KAAK;;AAG9E,SAAS,qBAAqB,OAA4C;AACxE,QAAO,MAAM,MAAK,SAAQ,OAAO,KAAK,qBAAqB,SAAS,EAAE,oBAAoB,KAAA;;AAG5F,SAAS,SAAS,KAAqB;AACrC,QAAO,IAAI,aAAa,CAAC,WAAW,EAAE,GAAG;;AAG3C,SAAS,UAAU,OAAoC;AACrD,QAAO,OAAO,UAAU,YAAY,MAAM,MAAM,GAAG,MAAM,MAAM,GAAG,KAAA;;AAGpE,SAAS,kBAAkB,OAA+B;AACxD,QAAO,OAAO,UAAU,YAAY,MAAM,MAAM,GAAG,MAAM,MAAM,GAAG;;AAGpE,SAAS,UAAU,OAAoC;AACrD,QAAO,OAAO,UAAU,YAAY,OAAO,SAAS,MAAM,GAAG,QAAQ,KAAA;;AAGvE,SAAS,kBAAkB,GAAkB,GAA0B;CACrE,MAAM,UAAU,SAAS,EAAE,IAAI,GAAG,SAAS,EAAE,IAAI;AACjD,QAAO,YAAY,IAAI,EAAE,SAAS,EAAE,SAAS"}
|
package/dist/install.js
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { t as components_exports } from "./components-
|
|
2
|
-
import "./templates-
|
|
1
|
+
import { t as components_exports } from "./components-BhK-dW99.js";
|
|
2
|
+
import "./templates-BorLR_7p.js";
|
|
3
3
|
//#region src/install.ts
|
|
4
4
|
/**
|
|
5
5
|
* Vue plugin that registers all MINT SDK components globally.
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
import { SequenceProgress } from './types';
|
|
2
|
+
export declare function sequenceProgressPercent(progress: SequenceProgress | null | undefined): number;
|
|
3
|
+
export declare function sequenceSamplesRemaining(progress: SequenceProgress | null | undefined): number;
|
|
4
|
+
export declare function estimateSequenceRemainingSeconds(progress: SequenceProgress | null | undefined): number | null;
|
|
5
|
+
export declare function estimateSequenceFinishDate(progress: SequenceProgress | null | undefined, now?: Date): Date | null;
|
|
6
|
+
export declare function formatSequenceRemaining(progress: SequenceProgress | null | undefined): string | null;
|
|
7
|
+
export declare function formatSequenceEta(progress: SequenceProgress | null | undefined, locale?: Intl.LocalesArgument, options?: Intl.DateTimeFormatOptions): string | null;
|
package/dist/lcms.d.ts
ADDED
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
import { LcmsPlateCell, LcmsPlateType } from './utils/rack';
|
|
2
|
+
export type LcmsPolarity = 'POS' | 'NEG' | 'BOTH';
|
|
3
|
+
export type LcmsContainerType = 'VIAL' | 'PLATE';
|
|
4
|
+
export interface LcmsSequenceItem {
|
|
5
|
+
sample_type: string;
|
|
6
|
+
file_name: string;
|
|
7
|
+
sample_id: string;
|
|
8
|
+
path: string;
|
|
9
|
+
instrument_method: string;
|
|
10
|
+
position: string;
|
|
11
|
+
injection_volume: number;
|
|
12
|
+
}
|
|
13
|
+
export interface LcmsSequenceTableColumn {
|
|
14
|
+
key: keyof LcmsSequenceItem | 'index' | 'actions';
|
|
15
|
+
label: string;
|
|
16
|
+
align?: 'left' | 'right';
|
|
17
|
+
}
|
|
18
|
+
export declare const DEFAULT_LCMS_SEQUENCE_COLUMNS: LcmsSequenceTableColumn[];
|
|
19
|
+
export declare function extractLcmsCommonPrefix(fileNames: readonly string[]): string;
|
|
20
|
+
export declare function extractLcmsSampleName(fileName: string, prefix?: string): string;
|
|
21
|
+
export declare function lcmsWellIdFromPosition(position: string): string;
|
|
22
|
+
export declare function inferLcmsPlateTypeFromWellIds(wellIds: readonly string[]): LcmsPlateType | null;
|
|
23
|
+
export declare function reconstructLcmsPlateCellsFromSequenceItems(items: readonly LcmsSequenceItem[]): {
|
|
24
|
+
cells: LcmsPlateCell[];
|
|
25
|
+
plateType: LcmsPlateType;
|
|
26
|
+
} | null;
|
|
27
|
+
export declare function basenameFromWindowsPath(path: string | null | undefined): string;
|
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
export declare const ADMIN_ROLE = "admin";
|
|
2
|
+
export declare const ADMIN_PANEL_PERMISSIONS: readonly ["users.view", "users.invite", "users.manage", "platform.configure", "platform.view_logs", "plugins.configure", "plugins.install"];
|
|
3
|
+
export type AccessAudience = 'all' | 'admin' | 'user';
|
|
4
|
+
export type AccessAudienceInput = AccessAudience | readonly AccessAudience[];
|
|
5
|
+
export interface RoleInfo {
|
|
6
|
+
id?: number;
|
|
7
|
+
slug: string;
|
|
8
|
+
name?: string;
|
|
9
|
+
color?: string;
|
|
10
|
+
permissions?: readonly string[] | null;
|
|
11
|
+
project_scope?: 'all' | 'assigned' | string;
|
|
12
|
+
plugin_access?: readonly string[] | 'all' | null;
|
|
13
|
+
}
|
|
14
|
+
export interface PermissionUser {
|
|
15
|
+
role?: string | null;
|
|
16
|
+
role_obj?: RoleInfo | null;
|
|
17
|
+
roleObj?: RoleInfo | null;
|
|
18
|
+
permissions?: readonly string[] | null;
|
|
19
|
+
}
|
|
20
|
+
export interface AccessPolicy {
|
|
21
|
+
audience?: AccessAudienceInput;
|
|
22
|
+
visibleFor?: AccessAudienceInput;
|
|
23
|
+
requiresAuth?: boolean;
|
|
24
|
+
requiresAdmin?: boolean;
|
|
25
|
+
permissions?: readonly string[];
|
|
26
|
+
anyPermissions?: readonly string[];
|
|
27
|
+
plugin?: string;
|
|
28
|
+
}
|
|
29
|
+
export interface AccessControlled {
|
|
30
|
+
access?: AccessPolicy;
|
|
31
|
+
visibleFor?: AccessAudienceInput;
|
|
32
|
+
requiresAdmin?: boolean;
|
|
33
|
+
permissions?: readonly string[];
|
|
34
|
+
anyPermissions?: readonly string[];
|
|
35
|
+
}
|
|
36
|
+
export declare function getRoleInfo(user: PermissionUser | null | undefined): RoleInfo | null;
|
|
37
|
+
export declare function isAdminRole(role: string | null | undefined): boolean;
|
|
38
|
+
export declare function isAdminUser(user: PermissionUser | null | undefined): boolean;
|
|
39
|
+
export declare function getAccessAudience(user: PermissionUser | null | undefined): Exclude<AccessAudience, 'all'>;
|
|
40
|
+
export declare function getUserPermissions(user: PermissionUser | null | undefined): string[];
|
|
41
|
+
export declare function hasAllPermissions(user: PermissionUser | null | undefined, permissions?: readonly string[]): boolean;
|
|
42
|
+
export declare function hasAnyPermission(user: PermissionUser | null | undefined, permissions?: readonly string[]): boolean;
|
|
43
|
+
export declare function canAccessAdmin(user: PermissionUser | null | undefined): boolean;
|
|
44
|
+
export declare function canAccessPlugin(user: PermissionUser | null | undefined, pluginName: string | null | undefined): boolean;
|
|
45
|
+
export declare function normalizeAccessPolicy(rule: AccessControlled | AccessPolicy | undefined): AccessPolicy;
|
|
46
|
+
export declare function canAccessByPolicy(user: PermissionUser | null | undefined, rule: AccessControlled | AccessPolicy | undefined, isAuthenticated?: boolean): boolean;
|
package/dist/stores/auth.d.ts
CHANGED
|
@@ -9,6 +9,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
9
9
|
shortname: string | null;
|
|
10
10
|
email: string | null;
|
|
11
11
|
role: string;
|
|
12
|
+
roleObj?: {
|
|
13
|
+
id?: number | undefined;
|
|
14
|
+
slug: string;
|
|
15
|
+
name?: string | undefined;
|
|
16
|
+
color?: string | undefined;
|
|
17
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
18
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
19
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
20
|
+
} | null | undefined;
|
|
12
21
|
isActive: boolean;
|
|
13
22
|
} | null, UserInfo | {
|
|
14
23
|
id: string;
|
|
@@ -16,6 +25,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
16
25
|
shortname: string | null;
|
|
17
26
|
email: string | null;
|
|
18
27
|
role: string;
|
|
28
|
+
roleObj?: {
|
|
29
|
+
id?: number | undefined;
|
|
30
|
+
slug: string;
|
|
31
|
+
name?: string | undefined;
|
|
32
|
+
color?: string | undefined;
|
|
33
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
34
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
35
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
36
|
+
} | null | undefined;
|
|
19
37
|
isActive: boolean;
|
|
20
38
|
} | null>;
|
|
21
39
|
authConfig: import('vue').Ref<{
|
|
@@ -37,6 +55,9 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
37
55
|
isAuthenticated: import('vue').ComputedRef<boolean>;
|
|
38
56
|
needsAuth: import('vue').ComputedRef<boolean>;
|
|
39
57
|
isAdmin: import('vue').ComputedRef<boolean>;
|
|
58
|
+
userType: import('vue').ComputedRef<"admin" | "user">;
|
|
59
|
+
permissions: import('vue').ComputedRef<string[]>;
|
|
60
|
+
canAccessAdmin: import('vue').ComputedRef<boolean>;
|
|
40
61
|
canRegister: import('vue').ComputedRef<boolean>;
|
|
41
62
|
initialize: () => void;
|
|
42
63
|
setToken: (accessToken: string, expiresIn: number) => void;
|
|
@@ -46,6 +67,9 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
46
67
|
setUserInfo: (info: UserInfo) => void;
|
|
47
68
|
setError: (message: string | null) => void;
|
|
48
69
|
setLoading: (loading: boolean) => void;
|
|
70
|
+
hasPermission: (...perms: string[]) => boolean;
|
|
71
|
+
hasAnyPermission: (...perms: string[]) => boolean;
|
|
72
|
+
canAccessPlugin: (pluginName: string) => boolean;
|
|
49
73
|
logout: () => void;
|
|
50
74
|
}, "error" | "username" | "isLoading" | "token" | "tokenExpires" | "userInfo" | "authConfig" | "isInitialized">, Pick<{
|
|
51
75
|
token: import('vue').Ref<string | null, string | null>;
|
|
@@ -57,6 +81,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
57
81
|
shortname: string | null;
|
|
58
82
|
email: string | null;
|
|
59
83
|
role: string;
|
|
84
|
+
roleObj?: {
|
|
85
|
+
id?: number | undefined;
|
|
86
|
+
slug: string;
|
|
87
|
+
name?: string | undefined;
|
|
88
|
+
color?: string | undefined;
|
|
89
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
90
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
91
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
92
|
+
} | null | undefined;
|
|
60
93
|
isActive: boolean;
|
|
61
94
|
} | null, UserInfo | {
|
|
62
95
|
id: string;
|
|
@@ -64,6 +97,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
64
97
|
shortname: string | null;
|
|
65
98
|
email: string | null;
|
|
66
99
|
role: string;
|
|
100
|
+
roleObj?: {
|
|
101
|
+
id?: number | undefined;
|
|
102
|
+
slug: string;
|
|
103
|
+
name?: string | undefined;
|
|
104
|
+
color?: string | undefined;
|
|
105
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
106
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
107
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
108
|
+
} | null | undefined;
|
|
67
109
|
isActive: boolean;
|
|
68
110
|
} | null>;
|
|
69
111
|
authConfig: import('vue').Ref<{
|
|
@@ -85,6 +127,9 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
85
127
|
isAuthenticated: import('vue').ComputedRef<boolean>;
|
|
86
128
|
needsAuth: import('vue').ComputedRef<boolean>;
|
|
87
129
|
isAdmin: import('vue').ComputedRef<boolean>;
|
|
130
|
+
userType: import('vue').ComputedRef<"admin" | "user">;
|
|
131
|
+
permissions: import('vue').ComputedRef<string[]>;
|
|
132
|
+
canAccessAdmin: import('vue').ComputedRef<boolean>;
|
|
88
133
|
canRegister: import('vue').ComputedRef<boolean>;
|
|
89
134
|
initialize: () => void;
|
|
90
135
|
setToken: (accessToken: string, expiresIn: number) => void;
|
|
@@ -94,8 +139,11 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
94
139
|
setUserInfo: (info: UserInfo) => void;
|
|
95
140
|
setError: (message: string | null) => void;
|
|
96
141
|
setLoading: (loading: boolean) => void;
|
|
142
|
+
hasPermission: (...perms: string[]) => boolean;
|
|
143
|
+
hasAnyPermission: (...perms: string[]) => boolean;
|
|
144
|
+
canAccessPlugin: (pluginName: string) => boolean;
|
|
97
145
|
logout: () => void;
|
|
98
|
-
}, "isAuthenticated" | "needsAuth" | "isAdmin" | "canRegister">, Pick<{
|
|
146
|
+
}, "permissions" | "userType" | "isAuthenticated" | "needsAuth" | "isAdmin" | "canAccessAdmin" | "canRegister">, Pick<{
|
|
99
147
|
token: import('vue').Ref<string | null, string | null>;
|
|
100
148
|
tokenExpires: import('vue').Ref<Date | null, Date | null>;
|
|
101
149
|
username: import('vue').Ref<string | null, string | null>;
|
|
@@ -105,6 +153,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
105
153
|
shortname: string | null;
|
|
106
154
|
email: string | null;
|
|
107
155
|
role: string;
|
|
156
|
+
roleObj?: {
|
|
157
|
+
id?: number | undefined;
|
|
158
|
+
slug: string;
|
|
159
|
+
name?: string | undefined;
|
|
160
|
+
color?: string | undefined;
|
|
161
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
162
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
163
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
164
|
+
} | null | undefined;
|
|
108
165
|
isActive: boolean;
|
|
109
166
|
} | null, UserInfo | {
|
|
110
167
|
id: string;
|
|
@@ -112,6 +169,15 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
112
169
|
shortname: string | null;
|
|
113
170
|
email: string | null;
|
|
114
171
|
role: string;
|
|
172
|
+
roleObj?: {
|
|
173
|
+
id?: number | undefined;
|
|
174
|
+
slug: string;
|
|
175
|
+
name?: string | undefined;
|
|
176
|
+
color?: string | undefined;
|
|
177
|
+
permissions?: (readonly string[] | null) | undefined;
|
|
178
|
+
project_scope?: "all" | "assigned" | string | undefined;
|
|
179
|
+
plugin_access?: (readonly string[] | "all" | null) | undefined;
|
|
180
|
+
} | null | undefined;
|
|
115
181
|
isActive: boolean;
|
|
116
182
|
} | null>;
|
|
117
183
|
authConfig: import('vue').Ref<{
|
|
@@ -133,6 +199,9 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
133
199
|
isAuthenticated: import('vue').ComputedRef<boolean>;
|
|
134
200
|
needsAuth: import('vue').ComputedRef<boolean>;
|
|
135
201
|
isAdmin: import('vue').ComputedRef<boolean>;
|
|
202
|
+
userType: import('vue').ComputedRef<"admin" | "user">;
|
|
203
|
+
permissions: import('vue').ComputedRef<string[]>;
|
|
204
|
+
canAccessAdmin: import('vue').ComputedRef<boolean>;
|
|
136
205
|
canRegister: import('vue').ComputedRef<boolean>;
|
|
137
206
|
initialize: () => void;
|
|
138
207
|
setToken: (accessToken: string, expiresIn: number) => void;
|
|
@@ -142,5 +211,8 @@ export declare const useAuthStore: import('pinia').StoreDefinition<"mint-auth",
|
|
|
142
211
|
setUserInfo: (info: UserInfo) => void;
|
|
143
212
|
setError: (message: string | null) => void;
|
|
144
213
|
setLoading: (loading: boolean) => void;
|
|
214
|
+
hasPermission: (...perms: string[]) => boolean;
|
|
215
|
+
hasAnyPermission: (...perms: string[]) => boolean;
|
|
216
|
+
canAccessPlugin: (pluginName: string) => boolean;
|
|
145
217
|
logout: () => void;
|
|
146
|
-
}, "initialize" | "setToken" | "clearToken" | "setAuthConfig" | "setUsername" | "setUserInfo" | "setError" | "setLoading" | "logout">>;
|
|
218
|
+
}, "initialize" | "setToken" | "clearToken" | "setAuthConfig" | "setUsername" | "setUserInfo" | "setError" | "setLoading" | "hasPermission" | "hasAnyPermission" | "canAccessPlugin" | "logout">>;
|
package/dist/stores/index.js
CHANGED
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import {
|
|
1
|
+
import { g as useSettingsStore, h as colorPalettes, t as useAuthStore } from "../auth-B7g4J4ZF.js";
|
|
2
2
|
export { colorPalettes, useAuthStore, useSettingsStore };
|