@monoes/monograph 1.5.6 → 1.5.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (708) hide show
  1. package/README.md +31 -15
  2. package/dist/src/analysis/changed-files.d.ts +3 -0
  3. package/dist/src/analysis/changed-files.d.ts.map +1 -1
  4. package/dist/src/analysis/changed-files.js +11 -9
  5. package/dist/src/analysis/changed-files.js.map +1 -1
  6. package/dist/src/analysis/changed-workspaces.d.ts.map +1 -1
  7. package/dist/src/analysis/changed-workspaces.js +2 -9
  8. package/dist/src/analysis/changed-workspaces.js.map +1 -1
  9. package/dist/src/analysis/git-changed-files.d.ts +3 -0
  10. package/dist/src/analysis/git-changed-files.d.ts.map +1 -1
  11. package/dist/src/analysis/git-changed-files.js +17 -12
  12. package/dist/src/analysis/git-changed-files.js.map +1 -1
  13. package/dist/src/analysis/git-ref.d.ts +33 -0
  14. package/dist/src/analysis/git-ref.d.ts.map +1 -0
  15. package/dist/src/analysis/git-ref.js +54 -0
  16. package/dist/src/analysis/git-ref.js.map +1 -0
  17. package/dist/src/analyze/boundary-analysis.d.ts.map +1 -1
  18. package/dist/src/analyze/boundary-analysis.js +42 -42
  19. package/dist/src/analyze/boundary-analysis.js.map +1 -1
  20. package/dist/src/index.d.ts +1 -0
  21. package/dist/src/index.d.ts.map +1 -1
  22. package/dist/src/index.js +1 -0
  23. package/dist/src/index.js.map +1 -1
  24. package/dist/src/lsp/server.d.ts +1 -1
  25. package/dist/src/lsp/server.d.ts.map +1 -1
  26. package/dist/src/lsp/server.js +48 -13
  27. package/dist/src/lsp/server.js.map +1 -1
  28. package/dist/src/mcp-tools/api-impact.d.ts.map +1 -1
  29. package/dist/src/mcp-tools/api-impact.js +1 -16
  30. package/dist/src/mcp-tools/api-impact.js.map +1 -1
  31. package/dist/src/mcp-tools/context.d.ts.map +1 -1
  32. package/dist/src/mcp-tools/context.js +12 -23
  33. package/dist/src/mcp-tools/context.js.map +1 -1
  34. package/dist/src/mcp-tools/explain.d.ts.map +1 -1
  35. package/dist/src/mcp-tools/explain.js +15 -20
  36. package/dist/src/mcp-tools/explain.js.map +1 -1
  37. package/dist/src/mcp-tools/graph-query.d.ts.map +1 -1
  38. package/dist/src/mcp-tools/graph-query.js +10 -19
  39. package/dist/src/mcp-tools/graph-query.js.map +1 -1
  40. package/dist/src/mcp-tools/impact.d.ts.map +1 -1
  41. package/dist/src/mcp-tools/impact.js +38 -41
  42. package/dist/src/mcp-tools/impact.js.map +1 -1
  43. package/dist/src/mcp-tools/neighbors.d.ts.map +1 -1
  44. package/dist/src/mcp-tools/neighbors.js +4 -22
  45. package/dist/src/mcp-tools/neighbors.js.map +1 -1
  46. package/dist/src/mcp-tools/query.d.ts.map +1 -1
  47. package/dist/src/mcp-tools/query.js +14 -9
  48. package/dist/src/mcp-tools/query.js.map +1 -1
  49. package/dist/src/mcp-tools/rename.d.ts.map +1 -1
  50. package/dist/src/mcp-tools/rename.js +3 -20
  51. package/dist/src/mcp-tools/rename.js.map +1 -1
  52. package/dist/src/parsers/c.d.ts.map +1 -1
  53. package/dist/src/parsers/c.js +12 -0
  54. package/dist/src/parsers/c.js.map +1 -1
  55. package/dist/src/parsers/extractor.d.ts.map +1 -1
  56. package/dist/src/parsers/extractor.js +2 -1
  57. package/dist/src/parsers/extractor.js.map +1 -1
  58. package/dist/src/parsers/go.d.ts.map +1 -1
  59. package/dist/src/parsers/go.js +19 -1
  60. package/dist/src/parsers/go.js.map +1 -1
  61. package/dist/src/parsers/language-config.d.ts +4 -0
  62. package/dist/src/parsers/language-config.d.ts.map +1 -1
  63. package/dist/src/parsers/language-parsers.d.ts.map +1 -1
  64. package/dist/src/parsers/language-parsers.js +3 -1
  65. package/dist/src/parsers/language-parsers.js.map +1 -1
  66. package/dist/src/parsers/loader.d.ts +1 -0
  67. package/dist/src/parsers/loader.d.ts.map +1 -1
  68. package/dist/src/parsers/loader.js +161 -20
  69. package/dist/src/parsers/loader.js.map +1 -1
  70. package/dist/src/parsers/python.d.ts.map +1 -1
  71. package/dist/src/parsers/python.js +6 -0
  72. package/dist/src/parsers/python.js.map +1 -1
  73. package/dist/src/parsers/rust.d.ts.map +1 -1
  74. package/dist/src/parsers/rust.js +10 -0
  75. package/dist/src/parsers/rust.js.map +1 -1
  76. package/dist/src/pipeline/orchestrator.d.ts.map +1 -1
  77. package/dist/src/pipeline/orchestrator.js +17 -0
  78. package/dist/src/pipeline/orchestrator.js.map +1 -1
  79. package/dist/src/pipeline/phases/pdf-parse.d.ts.map +1 -1
  80. package/dist/src/pipeline/phases/pdf-parse.js +10 -11
  81. package/dist/src/pipeline/phases/pdf-parse.js.map +1 -1
  82. package/dist/src/storage/edge-store.d.ts +1 -0
  83. package/dist/src/storage/edge-store.d.ts.map +1 -1
  84. package/dist/src/storage/edge-store.js +5 -8
  85. package/dist/src/storage/edge-store.js.map +1 -1
  86. package/dist/src/storage/node-store.d.ts +1 -0
  87. package/dist/src/storage/node-store.d.ts.map +1 -1
  88. package/dist/src/storage/node-store.js +11 -12
  89. package/dist/src/storage/node-store.js.map +1 -1
  90. package/dist/src/storage/schema.d.ts.map +1 -1
  91. package/dist/src/storage/schema.js +6 -0
  92. package/dist/src/storage/schema.js.map +1 -1
  93. package/dist/src/storage/utils.d.ts +11 -0
  94. package/dist/src/storage/utils.d.ts.map +1 -0
  95. package/dist/src/storage/utils.js +24 -0
  96. package/dist/src/storage/utils.js.map +1 -0
  97. package/dist/tsconfig.tsbuildinfo +1 -1
  98. package/package.json +12 -9
  99. package/.monomind/data/ranked-context.json +0 -5
  100. package/.monomind/loops/mastermind-review-1782162423447.json +0 -16
  101. package/.monomind/sessions/session-1777578175215.json +0 -15
  102. package/.monomind/sessions/session-1777823684507.json +0 -15
  103. package/.monomind/sessions/session-1777928944749.json +0 -15
  104. package/.monomind/sessions/session-1778052902210.json +0 -15
  105. package/.monomind/sessions/session-1778056744636.json +0 -15
  106. package/.monomind/sessions/session-1778061077599.json +0 -15
  107. package/.monomind/sessions/session-1778102154764.json +0 -15
  108. package/__tests__/analysis/shape-extractor.test.ts +0 -124
  109. package/__tests__/analysis/surprise-scorer.test.ts +0 -154
  110. package/__tests__/cache/extraction-cache.test.ts +0 -45
  111. package/__tests__/cli/ai-context.test.ts +0 -175
  112. package/__tests__/cli/augment.test.ts +0 -128
  113. package/__tests__/cli/doctor.test.ts +0 -125
  114. package/__tests__/cli/eval-server.test.ts +0 -89
  115. package/__tests__/cli/setup.test.ts +0 -178
  116. package/__tests__/cli/skill-gen.test.ts +0 -280
  117. package/__tests__/export/formats.test.ts +0 -82
  118. package/__tests__/fixtures/sample.c +0 -25
  119. package/__tests__/fixtures/sample.cpp +0 -32
  120. package/__tests__/fixtures/sample.dart +0 -34
  121. package/__tests__/fixtures/sample.kt +0 -30
  122. package/__tests__/fixtures/sample.php +0 -30
  123. package/__tests__/fixtures/sample.py +0 -11
  124. package/__tests__/fixtures/sample.rb +0 -26
  125. package/__tests__/fixtures/sample.swift +0 -42
  126. package/__tests__/fixtures/sample.ts +0 -17
  127. package/__tests__/fixtures/sample.vue +0 -40
  128. package/__tests__/groups/group-search.test.ts +0 -221
  129. package/__tests__/groups/group-sync.test.ts +0 -336
  130. package/__tests__/integration/build-atomicity.test.ts +0 -61
  131. package/__tests__/integration/call-attribution.test.ts +0 -116
  132. package/__tests__/integration/full-pipeline.test.ts +0 -64
  133. package/__tests__/integration/graph-report-freshness.test.ts +0 -53
  134. package/__tests__/integration/incremental-build.test.ts +0 -103
  135. package/__tests__/mcp-resources/resources.test.ts +0 -256
  136. package/__tests__/mcp-tools/api-impact.test.ts +0 -188
  137. package/__tests__/mcp-tools/context.test.ts +0 -130
  138. package/__tests__/mcp-tools/cypher.test.ts +0 -258
  139. package/__tests__/mcp-tools/detect-changes.test.ts +0 -114
  140. package/__tests__/mcp-tools/impact.test.ts +0 -133
  141. package/__tests__/mcp-tools/rename.test.ts +0 -117
  142. package/__tests__/mcp-tools/route-map.test.ts +0 -237
  143. package/__tests__/mcp-tools/shape-check.test.ts +0 -202
  144. package/__tests__/mcp-tools/tool-map.test.ts +0 -135
  145. package/__tests__/parsers/c.test.ts +0 -28
  146. package/__tests__/parsers/cpp.test.ts +0 -28
  147. package/__tests__/parsers/csharp.test.ts +0 -62
  148. package/__tests__/parsers/dart.test.ts +0 -28
  149. package/__tests__/parsers/kotlin.test.ts +0 -28
  150. package/__tests__/parsers/loader.test.ts +0 -14
  151. package/__tests__/parsers/php.test.ts +0 -28
  152. package/__tests__/parsers/python.test.ts +0 -32
  153. package/__tests__/parsers/ruby.test.ts +0 -33
  154. package/__tests__/parsers/swift.test.ts +0 -28
  155. package/__tests__/parsers/typescript.test.ts +0 -45
  156. package/__tests__/parsers/vue.test.ts +0 -28
  157. package/__tests__/pipeline/analysis.test.ts +0 -58
  158. package/__tests__/pipeline/phases/corpus-check.test.ts +0 -26
  159. package/__tests__/pipeline/phases/evidence.test.ts +0 -41
  160. package/__tests__/pipeline/phases/field-access.test.ts +0 -22
  161. package/__tests__/pipeline/phases/leiden.test.ts +0 -72
  162. package/__tests__/pipeline/phases/markdown.test.ts +0 -84
  163. package/__tests__/pipeline/phases/middleware-extractor.test.ts +0 -131
  164. package/__tests__/pipeline/phases/orm.test.ts +0 -379
  165. package/__tests__/pipeline/phases/processes.test.ts +0 -191
  166. package/__tests__/pipeline/phases/routes.test.ts +0 -195
  167. package/__tests__/pipeline/phases/scope-resolution.test.ts +0 -133
  168. package/__tests__/pipeline/phases/tools.test.ts +0 -161
  169. package/__tests__/pipeline/phases/variables.test.ts +0 -30
  170. package/__tests__/pipeline/phases/wildcard-synthesis.test.ts +0 -207
  171. package/__tests__/pipeline/phases.test.ts +0 -41
  172. package/__tests__/pipeline/runner.test.ts +0 -28
  173. package/__tests__/registry/repo-registry.test.ts +0 -127
  174. package/__tests__/reporting/graph-report.suggest.test.ts +0 -36
  175. package/__tests__/reporting/graph-report.test.ts +0 -165
  176. package/__tests__/search/ast-chunker.test.ts +0 -63
  177. package/__tests__/search/rrf.test.ts +0 -95
  178. package/__tests__/security/safe-fetch.test.ts +0 -41
  179. package/__tests__/security/sensitive-files.test.ts +0 -32
  180. package/__tests__/setup.ts +0 -1
  181. package/__tests__/skills/platform-skills.test.ts +0 -63
  182. package/__tests__/staleness/git-staleness.test.ts +0 -107
  183. package/__tests__/storage/db.test.ts +0 -37
  184. package/__tests__/storage/evidence-roundtrip.test.ts +0 -89
  185. package/__tests__/storage/stores.test.ts +0 -165
  186. package/__tests__/types.test.ts +0 -13
  187. package/__tests__/validation/extraction-validator.test.ts +0 -48
  188. package/__tests__/watch/watcher.test.ts +0 -31
  189. package/__tests__/web/analyze-api.test.ts +0 -66
  190. package/__tests__/web/api.test.ts +0 -210
  191. package/__tests__/web/mcp-http.test.ts +0 -67
  192. package/__tests__/web/react-ui.test.ts +0 -43
  193. package/__tests__/wiki/gist-publisher.test.ts +0 -66
  194. package/__tests__/wiki/providers.test.ts +0 -69
  195. package/__tests__/wiki/wiki-generator.test.ts +0 -260
  196. package/dist/src/fix/deps.d.ts +0 -14
  197. package/dist/src/fix/deps.d.ts.map +0 -1
  198. package/dist/src/fix/deps.js +0 -47
  199. package/dist/src/fix/deps.js.map +0 -1
  200. package/dist/src/fix/enum-members.d.ts +0 -20
  201. package/dist/src/fix/enum-members.d.ts.map +0 -1
  202. package/dist/src/fix/enum-members.js +0 -95
  203. package/dist/src/fix/enum-members.js.map +0 -1
  204. package/dist/src/fix/export-surgery.d.ts +0 -14
  205. package/dist/src/fix/export-surgery.d.ts.map +0 -1
  206. package/dist/src/fix/export-surgery.js +0 -140
  207. package/dist/src/fix/export-surgery.js.map +0 -1
  208. package/dist/src/fix/exports.d.ts +0 -16
  209. package/dist/src/fix/exports.d.ts.map +0 -1
  210. package/dist/src/fix/exports.js +0 -65
  211. package/dist/src/fix/exports.js.map +0 -1
  212. package/dist/src/fix/orchestrator.d.ts +0 -28
  213. package/dist/src/fix/orchestrator.d.ts.map +0 -1
  214. package/dist/src/fix/orchestrator.js +0 -39
  215. package/dist/src/fix/orchestrator.js.map +0 -1
  216. package/src/__tests__/analysis/benchmark.test.ts +0 -59
  217. package/src/__tests__/analysis/cluster-quality.test.ts +0 -106
  218. package/src/__tests__/analysis/corpus-health.test.ts +0 -33
  219. package/src/__tests__/analysis/dependency-health.test.ts +0 -105
  220. package/src/__tests__/analysis/file-classifier.test.ts +0 -50
  221. package/src/__tests__/analysis/node-similarity.test.ts +0 -81
  222. package/src/__tests__/cache/augment-cache.test.ts +0 -55
  223. package/src/__tests__/cli/check-update.test.ts +0 -42
  224. package/src/__tests__/cli/hooks-install.test.ts +0 -56
  225. package/src/__tests__/cli/hooks-marker.test.ts +0 -138
  226. package/src/__tests__/cli/hooks-status.test.ts +0 -42
  227. package/src/__tests__/export/adjacency-matrix.test.ts +0 -116
  228. package/src/__tests__/export/csv.test.ts +0 -39
  229. package/src/__tests__/export/dot.test.ts +0 -86
  230. package/src/__tests__/export/gexf.test.ts +0 -78
  231. package/src/__tests__/export/graphml.test.ts +0 -57
  232. package/src/__tests__/export/mermaid.test.ts +0 -89
  233. package/src/__tests__/graph/betweenness.test.ts +0 -89
  234. package/src/__tests__/graph/cycles.test.ts +0 -131
  235. package/src/__tests__/graph/dead-code.test.ts +0 -174
  236. package/src/__tests__/graph/dfs.test.ts +0 -62
  237. package/src/__tests__/graph/diff-summary.test.ts +0 -83
  238. package/src/__tests__/graph/edge-filter.test.ts +0 -129
  239. package/src/__tests__/graph/import-chain.test.ts +0 -111
  240. package/src/__tests__/graph/merge.test.ts +0 -151
  241. package/src/__tests__/graph/node-search.test.ts +0 -167
  242. package/src/__tests__/graph/normalize-id.test.ts +0 -102
  243. package/src/__tests__/graph/pagerank.test.ts +0 -96
  244. package/src/__tests__/graph/prune.test.ts +0 -110
  245. package/src/__tests__/graph/regex-search.test.ts +0 -166
  246. package/src/__tests__/graph/ripple-impact.test.ts +0 -73
  247. package/src/__tests__/graph/scc.test.ts +0 -85
  248. package/src/__tests__/graph/statistics.test.ts +0 -219
  249. package/src/__tests__/graph/subgraph.test.ts +0 -127
  250. package/src/__tests__/graph/topo-sort.test.ts +0 -110
  251. package/src/__tests__/graph/wcc.test.ts +0 -101
  252. package/src/__tests__/groups/grpc-extractor.test.ts +0 -47
  253. package/src/__tests__/groups/service-boundary.test.ts +0 -86
  254. package/src/__tests__/groups/topic-extractor.test.ts +0 -43
  255. package/src/__tests__/ingest/git-clone.test.ts +0 -128
  256. package/src/__tests__/ingest/query-memory.test.ts +0 -123
  257. package/src/__tests__/ingest/transcribe.test.ts +0 -58
  258. package/src/__tests__/ingest/url-ingest.test.ts +0 -48
  259. package/src/__tests__/mcp-resources/repo-context-resource.test.ts +0 -37
  260. package/src/__tests__/mcp-resources/repos-resource.test.ts +0 -71
  261. package/src/__tests__/mcp-resources/wiki-resource.test.ts +0 -52
  262. package/src/__tests__/mcp-tools/explain.test.ts +0 -46
  263. package/src/__tests__/mcp-tools/graph-query.test.ts +0 -45
  264. package/src/__tests__/mcp-tools/group-sync.test.ts +0 -8
  265. package/src/__tests__/mcp-tools/impact-filtering.test.ts +0 -48
  266. package/src/__tests__/mcp-tools/impact.risk.test.ts +0 -24
  267. package/src/__tests__/mcp-tools/list-repos.test.ts +0 -24
  268. package/src/__tests__/mcp-tools/neighbors.test.ts +0 -48
  269. package/src/__tests__/mcp-tools/query.test.ts +0 -42
  270. package/src/__tests__/parsers/language-parsers.test.ts +0 -52
  271. package/src/__tests__/parsers/named-bindings.test.ts +0 -73
  272. package/src/__tests__/pipeline/cluster-only.test.ts +0 -33
  273. package/src/__tests__/pipeline/phases/bridge-adapters/electron-ipc.test.ts +0 -87
  274. package/src/__tests__/pipeline/phases/bridge-adapters/tauri.test.ts +0 -116
  275. package/src/__tests__/pipeline/phases/bridge-adapters/wails.test.ts +0 -81
  276. package/src/__tests__/pipeline/phases/bridge-resolver.test.ts +0 -110
  277. package/src/__tests__/pipeline/phases/communities.cohesion.test.ts +0 -43
  278. package/src/__tests__/pipeline/phases/community-split.test.ts +0 -30
  279. package/src/__tests__/pipeline/phases/framework-detect.test.ts +0 -65
  280. package/src/__tests__/pipeline/phases/import-resolver.test.ts +0 -64
  281. package/src/__tests__/pipeline/phases/parse-arrow.test.ts +0 -33
  282. package/src/__tests__/pipeline/phases/parse-csharp.test.ts +0 -33
  283. package/src/__tests__/pipeline/phases/scan.monographignore.test.ts +0 -53
  284. package/src/__tests__/pipeline/phases/scan.negation.test.ts +0 -40
  285. package/src/__tests__/pipeline/phases/scope-resolution.go.test.ts +0 -34
  286. package/src/__tests__/pipeline/phases/scope-resolution.java.test.ts +0 -30
  287. package/src/__tests__/pipeline/phases/scope-resolution.rust.test.ts +0 -31
  288. package/src/__tests__/pipeline/phases/suggest-questions.test.ts +0 -46
  289. package/src/__tests__/pipeline/phases/surprises-scoring.test.ts +0 -46
  290. package/src/__tests__/pipeline/phases/variables-phase.test.ts +0 -78
  291. package/src/__tests__/pipeline/phases/wildcard-phase.test.ts +0 -99
  292. package/src/__tests__/pipeline/runner.parallel.test.ts +0 -78
  293. package/src/__tests__/reporting/graph-report-confidence.test.ts +0 -43
  294. package/src/__tests__/reporting/graph-report-gaps.test.ts +0 -41
  295. package/src/__tests__/scope-resolution/call-sites.test.ts +0 -89
  296. package/src/__tests__/scope-resolution/evidence-weights.test.ts +0 -49
  297. package/src/__tests__/search/diacritic.test.ts +0 -23
  298. package/src/__tests__/security/safe-fetch.test.ts +0 -125
  299. package/src/__tests__/skills/platform-skills.extra.test.ts +0 -36
  300. package/src/__tests__/web/api.clusters.test.ts +0 -65
  301. package/src/__tests__/web/api.file.test.ts +0 -44
  302. package/src/__tests__/web/api.grep.test.ts +0 -47
  303. package/src/__tests__/web/api.info.test.ts +0 -18
  304. package/src/__tests__/web/api.jobs.test.ts +0 -47
  305. package/src/__tests__/web/api.progress.test.ts +0 -25
  306. package/src/__tests__/web/api.stream.test.ts +0 -35
  307. package/src/__tests__/wiki/providers-reasoning.test.ts +0 -46
  308. package/src/__tests__/wiki/wiki-review-mode.test.ts +0 -22
  309. package/src/analysis/benchmark.ts +0 -132
  310. package/src/analysis/changed-files.ts +0 -73
  311. package/src/analysis/changed-workspaces.ts +0 -94
  312. package/src/analysis/churn-cache.ts +0 -179
  313. package/src/analysis/churn-trend.ts +0 -57
  314. package/src/analysis/churn.ts +0 -263
  315. package/src/analysis/cluster-quality.ts +0 -142
  316. package/src/analysis/combined.ts +0 -41
  317. package/src/analysis/corpus-health.ts +0 -41
  318. package/src/analysis/coverage-gaps.ts +0 -246
  319. package/src/analysis/dep-classification.ts +0 -167
  320. package/src/analysis/dependency-health.ts +0 -146
  321. package/src/analysis/duplicate-exports.ts +0 -110
  322. package/src/analysis/fallow-suppression.ts +0 -98
  323. package/src/analysis/feature-flags-config.ts +0 -47
  324. package/src/analysis/feature-flags.ts +0 -223
  325. package/src/analysis/file-classifier.ts +0 -87
  326. package/src/analysis/git-changed-files.ts +0 -62
  327. package/src/analysis/health-baseline.ts +0 -80
  328. package/src/analysis/issue-filters.ts +0 -56
  329. package/src/analysis/list.ts +0 -74
  330. package/src/analysis/node-similarity.ts +0 -115
  331. package/src/analysis/private-type-leaks.ts +0 -119
  332. package/src/analysis/progress.ts +0 -43
  333. package/src/analysis/project-state.ts +0 -95
  334. package/src/analysis/regression-config.ts +0 -36
  335. package/src/analysis/rule-overrides.ts +0 -81
  336. package/src/analysis/scripts.ts +0 -95
  337. package/src/analysis/shape-extractor.ts +0 -202
  338. package/src/analysis/since-duration.ts +0 -42
  339. package/src/analysis/suppression-context.ts +0 -95
  340. package/src/analysis/suppressions.ts +0 -80
  341. package/src/analysis/surprise-scorer.ts +0 -74
  342. package/src/analysis/targets.ts +0 -237
  343. package/src/analysis/unused-class-members.ts +0 -79
  344. package/src/analysis/workspace-filter.ts +0 -89
  345. package/src/analyze/boundary-analysis.ts +0 -129
  346. package/src/analyze/predicates/file.ts +0 -86
  347. package/src/analyze/predicates/import.ts +0 -90
  348. package/src/analyze/predicates/lifecycle.ts +0 -55
  349. package/src/analyze/unused-deps.ts +0 -70
  350. package/src/analyze/unused-exports.ts +0 -145
  351. package/src/analyze/unused-files.ts +0 -46
  352. package/src/api/production-override.ts +0 -63
  353. package/src/api/programmatic.ts +0 -118
  354. package/src/audit.ts +0 -234
  355. package/src/cache/augment-cache.ts +0 -63
  356. package/src/cache/extraction-cache.ts +0 -141
  357. package/src/check/filtering.ts +0 -78
  358. package/src/check/index.ts +0 -99
  359. package/src/check/output.ts +0 -79
  360. package/src/check/rules.ts +0 -61
  361. package/src/ci-template.ts +0 -84
  362. package/src/claude-cli.ts +0 -59
  363. package/src/cli/ai-context.ts +0 -193
  364. package/src/cli/augment.ts +0 -114
  365. package/src/cli/check-update.ts +0 -40
  366. package/src/cli/doctor.ts +0 -182
  367. package/src/cli/eval-server.ts +0 -126
  368. package/src/cli/hooks-install.ts +0 -202
  369. package/src/cli/setup.ts +0 -197
  370. package/src/cli/skill-gen.ts +0 -347
  371. package/src/commands/flags.ts +0 -72
  372. package/src/config/boundary-config.ts +0 -183
  373. package/src/config/cli-schema.ts +0 -81
  374. package/src/config/config-parsing.ts +0 -102
  375. package/src/config/duplicates-config.ts +0 -62
  376. package/src/config/external-plugin.ts +0 -77
  377. package/src/config/health-config.ts +0 -42
  378. package/src/config/ignore-exports-used-in-file.ts +0 -46
  379. package/src/config/migration-types.ts +0 -73
  380. package/src/config/output-format.ts +0 -24
  381. package/src/config/plugins/builtin.ts +0 -411
  382. package/src/config/plugins/registry.ts +0 -77
  383. package/src/config/plugins/types.ts +0 -14
  384. package/src/config/resolution.ts +0 -102
  385. package/src/config/rules.ts +0 -70
  386. package/src/config/schema-gen.ts +0 -115
  387. package/src/config/types.ts +0 -149
  388. package/src/config/used-class-members.ts +0 -53
  389. package/src/config/validate.ts +0 -108
  390. package/src/config/workspace.ts +0 -137
  391. package/src/coverage/cloud-client.ts +0 -111
  392. package/src/coverage/upload-inventory.ts +0 -84
  393. package/src/coverage/upload-source-maps.ts +0 -97
  394. package/src/discover/entry-points.ts +0 -51
  395. package/src/discover/infrastructure-entries.ts +0 -175
  396. package/src/duplicates/detect/concatenation.ts +0 -37
  397. package/src/duplicates/detect/extraction.ts +0 -107
  398. package/src/duplicates/detect/filtering.ts +0 -112
  399. package/src/duplicates/detect/lcp.ts +0 -27
  400. package/src/duplicates/detect/ranking.ts +0 -16
  401. package/src/duplicates/detect/statistics.ts +0 -69
  402. package/src/duplicates/detect/suffix-array.ts +0 -88
  403. package/src/duplicates/families.ts +0 -95
  404. package/src/duplicates/normalize.ts +0 -58
  405. package/src/duplicates/shingle-filter.ts +0 -37
  406. package/src/duplicates/token-types.ts +0 -62
  407. package/src/duplicates/tokenize/index.ts +0 -104
  408. package/src/error/fallow-error.ts +0 -94
  409. package/src/error.ts +0 -47
  410. package/src/export/adjacency-matrix.ts +0 -127
  411. package/src/export/analysis-json.ts +0 -87
  412. package/src/export/badge.ts +0 -105
  413. package/src/export/canvas.ts +0 -42
  414. package/src/export/codeclimate.ts +0 -201
  415. package/src/export/compact-health.ts +0 -119
  416. package/src/export/compact.ts +0 -83
  417. package/src/export/csv.ts +0 -33
  418. package/src/export/cypher.ts +0 -33
  419. package/src/export/dot.ts +0 -52
  420. package/src/export/gexf.ts +0 -59
  421. package/src/export/graphml.ts +0 -50
  422. package/src/export/html.ts +0 -548
  423. package/src/export/index.ts +0 -9
  424. package/src/export/json.ts +0 -36
  425. package/src/export/markdown.ts +0 -290
  426. package/src/export/mermaid.ts +0 -100
  427. package/src/export/obsidian.ts +0 -44
  428. package/src/export/sarif.ts +0 -245
  429. package/src/export/svg.ts +0 -68
  430. package/src/fix/deps.ts +0 -70
  431. package/src/fix/enum-members.ts +0 -103
  432. package/src/fix/export-surgery.ts +0 -197
  433. package/src/fix/exports.ts +0 -93
  434. package/src/fix/orchestrator.ts +0 -67
  435. package/src/graph/analyzer.ts +0 -69
  436. package/src/graph/author-analytics.ts +0 -217
  437. package/src/graph/baseline.ts +0 -432
  438. package/src/graph/clone-families.ts +0 -132
  439. package/src/graph/codeowners-extended.ts +0 -114
  440. package/src/graph/codeowners-gitlab.ts +0 -150
  441. package/src/graph/codeowners.ts +0 -217
  442. package/src/graph/complexity.ts +0 -200
  443. package/src/graph/cross-reference-findings.ts +0 -85
  444. package/src/graph/cross-reference.ts +0 -139
  445. package/src/graph/cycle-detection.ts +0 -311
  446. package/src/graph/cycles.ts +0 -222
  447. package/src/graph/dead-code.ts +0 -128
  448. package/src/graph/dependency-closure.ts +0 -126
  449. package/src/graph/dfs.ts +0 -118
  450. package/src/graph/diff.ts +0 -92
  451. package/src/graph/duplication-stats.ts +0 -79
  452. package/src/graph/edge-filter.ts +0 -117
  453. package/src/graph/explain.ts +0 -133
  454. package/src/graph/external-style-usage.ts +0 -81
  455. package/src/graph/health-score.ts +0 -179
  456. package/src/graph/hotspots.ts +0 -219
  457. package/src/graph/import-chain.ts +0 -148
  458. package/src/graph/loader.ts +0 -44
  459. package/src/graph/maintainability.ts +0 -156
  460. package/src/graph/merge.ts +0 -174
  461. package/src/graph/mirrored-dirs.ts +0 -202
  462. package/src/graph/narrowing.ts +0 -92
  463. package/src/graph/node-search.ts +0 -201
  464. package/src/graph/node-types.ts +0 -67
  465. package/src/graph/normalize-id.ts +0 -138
  466. package/src/graph/pagerank.ts +0 -165
  467. package/src/graph/prune.ts +0 -95
  468. package/src/graph/re-exports/propagate.ts +0 -95
  469. package/src/graph/reachability.ts +0 -99
  470. package/src/graph/regex-search.ts +0 -232
  471. package/src/graph/regression.ts +0 -199
  472. package/src/graph/resolve/discover-types.ts +0 -45
  473. package/src/graph/resolve/dynamic-imports.ts +0 -102
  474. package/src/graph/resolve/fallbacks.ts +0 -79
  475. package/src/graph/resolve/index.ts +0 -68
  476. package/src/graph/resolve/path-info.ts +0 -41
  477. package/src/graph/resolve/re-exports.ts +0 -14
  478. package/src/graph/resolve/react-native.ts +0 -27
  479. package/src/graph/resolve/require-imports.ts +0 -18
  480. package/src/graph/resolve/specifier.ts +0 -120
  481. package/src/graph/resolve/static-imports.ts +0 -14
  482. package/src/graph/resolve/types.ts +0 -108
  483. package/src/graph/resolve/upgrades.ts +0 -32
  484. package/src/graph/ripple-impact.ts +0 -131
  485. package/src/graph/risk-profile.ts +0 -179
  486. package/src/graph/statistics.ts +0 -165
  487. package/src/graph/stats.ts +0 -157
  488. package/src/graph/subgraph.ts +0 -162
  489. package/src/graph/topo-sort.ts +0 -171
  490. package/src/graph/wcc.ts +0 -187
  491. package/src/groups/contract-bridge.ts +0 -103
  492. package/src/groups/contract-registry.ts +0 -263
  493. package/src/groups/group-config.ts +0 -108
  494. package/src/groups/group-search.ts +0 -139
  495. package/src/groups/group-sync.ts +0 -82
  496. package/src/groups/grpc-extractor.ts +0 -64
  497. package/src/groups/service-boundary.ts +0 -119
  498. package/src/groups/topic-extractor.ts +0 -90
  499. package/src/health/analysis-counts-snapshot.ts +0 -57
  500. package/src/health/analysis-counts.ts +0 -70
  501. package/src/health/complexity-findings.ts +0 -115
  502. package/src/health/distribution-thresholds.ts +0 -54
  503. package/src/health/grouping.ts +0 -138
  504. package/src/health/health-grouping.ts +0 -86
  505. package/src/health/health-report-types.ts +0 -165
  506. package/src/health/health-report.ts +0 -81
  507. package/src/health/health-score.ts +0 -65
  508. package/src/health/hotspot-utils.ts +0 -55
  509. package/src/health/hotspots.ts +0 -104
  510. package/src/health/large-functions.ts +0 -34
  511. package/src/health/ownership-metrics.ts +0 -61
  512. package/src/health/ownership-risk.ts +0 -98
  513. package/src/health/ownership.ts +0 -174
  514. package/src/health/quality-gate.ts +0 -57
  515. package/src/health/risk-profile.ts +0 -39
  516. package/src/health/runtime-coverage-report.ts +0 -101
  517. package/src/health/runtime-coverage.ts +0 -71
  518. package/src/health/scores.ts +0 -72
  519. package/src/health/scoring-types.ts +0 -48
  520. package/src/health/target-thresholds.ts +0 -92
  521. package/src/health/target-types.ts +0 -54
  522. package/src/health/targets.ts +0 -151
  523. package/src/health/timings.ts +0 -86
  524. package/src/health/trend-types.ts +0 -57
  525. package/src/health/trends.ts +0 -86
  526. package/src/health/vital-signs-compute.ts +0 -108
  527. package/src/health/vital-signs-snapshot.ts +0 -72
  528. package/src/health/vital-signs.ts +0 -101
  529. package/src/index.ts +0 -111
  530. package/src/ingest/git-clone.ts +0 -246
  531. package/src/ingest/query-memory.ts +0 -132
  532. package/src/ingest/transcribe.ts +0 -254
  533. package/src/ingest/url-ingest.ts +0 -87
  534. package/src/init/agent-hooks.ts +0 -86
  535. package/src/init/git-hooks.ts +0 -71
  536. package/src/init/project-detection.ts +0 -105
  537. package/src/license/manager.ts +0 -120
  538. package/src/lsp/code-actions.ts +0 -127
  539. package/src/lsp/code-lens.ts +0 -56
  540. package/src/lsp/diagnostics-ext.ts +0 -150
  541. package/src/lsp/diagnostics-push.ts +0 -103
  542. package/src/lsp/diagnostics.ts +0 -98
  543. package/src/lsp/hover.ts +0 -64
  544. package/src/lsp/server.ts +0 -254
  545. package/src/mcp/params.ts +0 -201
  546. package/src/mcp/resources.ts +0 -124
  547. package/src/mcp/tool-builders.ts +0 -203
  548. package/src/mcp-resources/communities-resource.ts +0 -72
  549. package/src/mcp-resources/graph-resource.ts +0 -14
  550. package/src/mcp-resources/index.ts +0 -9
  551. package/src/mcp-resources/named-cluster-resource.ts +0 -35
  552. package/src/mcp-resources/named-process-resource.ts +0 -26
  553. package/src/mcp-resources/processes-resource.ts +0 -67
  554. package/src/mcp-resources/repo-context-resource.ts +0 -36
  555. package/src/mcp-resources/repos-resource.ts +0 -21
  556. package/src/mcp-resources/schema-resource.ts +0 -46
  557. package/src/mcp-resources/wiki-resource.ts +0 -23
  558. package/src/mcp-tools/api-impact.ts +0 -181
  559. package/src/mcp-tools/context.ts +0 -111
  560. package/src/mcp-tools/cypher.ts +0 -29
  561. package/src/mcp-tools/detect-changes.ts +0 -116
  562. package/src/mcp-tools/explain.ts +0 -65
  563. package/src/mcp-tools/graph-query.ts +0 -128
  564. package/src/mcp-tools/group-list.ts +0 -88
  565. package/src/mcp-tools/group-query.ts +0 -26
  566. package/src/mcp-tools/group-sync.ts +0 -32
  567. package/src/mcp-tools/impact.ts +0 -202
  568. package/src/mcp-tools/index.ts +0 -21
  569. package/src/mcp-tools/list-repos.ts +0 -38
  570. package/src/mcp-tools/neighbors.ts +0 -80
  571. package/src/mcp-tools/query.ts +0 -86
  572. package/src/mcp-tools/rename.ts +0 -118
  573. package/src/mcp-tools/route-map.ts +0 -98
  574. package/src/mcp-tools/serve.ts +0 -41
  575. package/src/mcp-tools/shape-check.ts +0 -182
  576. package/src/mcp-tools/staleness.ts +0 -13
  577. package/src/mcp-tools/tool-map.ts +0 -66
  578. package/src/mcp-tools/wiki-build.ts +0 -37
  579. package/src/mcp-tools/wiki.ts +0 -28
  580. package/src/migrate/jscpd.ts +0 -78
  581. package/src/migrate/jsonc-gen.ts +0 -38
  582. package/src/migrate/knip.ts +0 -126
  583. package/src/migrate/toml-gen.ts +0 -48
  584. package/src/parsers/c.ts +0 -31
  585. package/src/parsers/cpp.ts +0 -29
  586. package/src/parsers/csharp.ts +0 -43
  587. package/src/parsers/dart.ts +0 -39
  588. package/src/parsers/extractor.ts +0 -202
  589. package/src/parsers/go.ts +0 -27
  590. package/src/parsers/java.ts +0 -27
  591. package/src/parsers/kotlin.ts +0 -36
  592. package/src/parsers/language-config.ts +0 -28
  593. package/src/parsers/language-parsers.ts +0 -120
  594. package/src/parsers/loader.ts +0 -149
  595. package/src/parsers/named-bindings.ts +0 -63
  596. package/src/parsers/php.ts +0 -37
  597. package/src/parsers/python.ts +0 -26
  598. package/src/parsers/ruby.ts +0 -39
  599. package/src/parsers/rust.ts +0 -25
  600. package/src/parsers/swift.ts +0 -28
  601. package/src/parsers/typescript.ts +0 -41
  602. package/src/parsers/vue.ts +0 -79
  603. package/src/pipeline/cluster-only.ts +0 -64
  604. package/src/pipeline/effort.ts +0 -50
  605. package/src/pipeline/orchestrator.ts +0 -384
  606. package/src/pipeline/phases/boundary.ts +0 -151
  607. package/src/pipeline/phases/bridge-adapters/electron-ipc.ts +0 -91
  608. package/src/pipeline/phases/bridge-adapters/registry.ts +0 -14
  609. package/src/pipeline/phases/bridge-adapters/tauri.ts +0 -103
  610. package/src/pipeline/phases/bridge-adapters/types.ts +0 -31
  611. package/src/pipeline/phases/bridge-adapters/wails.ts +0 -33
  612. package/src/pipeline/phases/bridge-resolver.ts +0 -77
  613. package/src/pipeline/phases/call-site-extractors.ts +0 -177
  614. package/src/pipeline/phases/communities.ts +0 -183
  615. package/src/pipeline/phases/contextual-proximity.ts +0 -88
  616. package/src/pipeline/phases/cross-file.ts +0 -116
  617. package/src/pipeline/phases/docs-parse.ts +0 -307
  618. package/src/pipeline/phases/evidence.ts +0 -9
  619. package/src/pipeline/phases/field-access.ts +0 -49
  620. package/src/pipeline/phases/framework-detect.ts +0 -109
  621. package/src/pipeline/phases/god-nodes.ts +0 -163
  622. package/src/pipeline/phases/import-resolver.ts +0 -114
  623. package/src/pipeline/phases/leiden.ts +0 -77
  624. package/src/pipeline/phases/llm-extract.ts +0 -178
  625. package/src/pipeline/phases/markdown.ts +0 -121
  626. package/src/pipeline/phases/middleware-extractor.ts +0 -127
  627. package/src/pipeline/phases/module-resolution.ts +0 -294
  628. package/src/pipeline/phases/mro.ts +0 -56
  629. package/src/pipeline/phases/orm.ts +0 -503
  630. package/src/pipeline/phases/parse.ts +0 -222
  631. package/src/pipeline/phases/pdf-parse.ts +0 -133
  632. package/src/pipeline/phases/processes.ts +0 -249
  633. package/src/pipeline/phases/re-export-propagation.ts +0 -160
  634. package/src/pipeline/phases/reachability.ts +0 -156
  635. package/src/pipeline/phases/routes.ts +0 -350
  636. package/src/pipeline/phases/scan.ts +0 -133
  637. package/src/pipeline/phases/scope-resolution.ts +0 -442
  638. package/src/pipeline/phases/structure.ts +0 -68
  639. package/src/pipeline/phases/suggest.ts +0 -92
  640. package/src/pipeline/phases/surprises.ts +0 -83
  641. package/src/pipeline/phases/tools.ts +0 -180
  642. package/src/pipeline/phases/variables-phase.ts +0 -37
  643. package/src/pipeline/phases/variables.ts +0 -67
  644. package/src/pipeline/phases/wildcard-phase.ts +0 -50
  645. package/src/pipeline/phases/wildcard-synthesis.ts +0 -214
  646. package/src/pipeline/progress.ts +0 -58
  647. package/src/pipeline/runner.ts +0 -88
  648. package/src/pipeline/types.ts +0 -41
  649. package/src/query/cypher-parser.ts +0 -450
  650. package/src/registry/repo-registry.ts +0 -125
  651. package/src/regression/baseline-deltas.ts +0 -215
  652. package/src/regression/baseline.ts +0 -76
  653. package/src/regression/counts.ts +0 -87
  654. package/src/regression/outcome.ts +0 -78
  655. package/src/regression/tolerance.ts +0 -35
  656. package/src/report/attributed-duplication.ts +0 -112
  657. package/src/report/badge-svg.ts +0 -100
  658. package/src/report/cross-ref-human.ts +0 -50
  659. package/src/report/duplication-grouping.ts +0 -74
  660. package/src/report/grouping.ts +0 -137
  661. package/src/report/human-check.ts +0 -291
  662. package/src/report/human-dupes.ts +0 -142
  663. package/src/report/human-health.ts +0 -195
  664. package/src/report/human.ts +0 -120
  665. package/src/report/json-actions.ts +0 -91
  666. package/src/report/json-builders.ts +0 -70
  667. package/src/report/json-schema.ts +0 -75
  668. package/src/report/number-format.ts +0 -91
  669. package/src/report/output-grouped.ts +0 -102
  670. package/src/report/pipeline-perf.ts +0 -56
  671. package/src/report/trace-human.ts +0 -127
  672. package/src/reporting/graph-report.ts +0 -431
  673. package/src/results/fallow-results.ts +0 -152
  674. package/src/results/types.ts +0 -149
  675. package/src/scope-resolution/evidence-weights.ts +0 -41
  676. package/src/search/ast-chunker.ts +0 -206
  677. package/src/search/diacritic.ts +0 -7
  678. package/src/search/hybrid-query.ts +0 -65
  679. package/src/search/rrf.ts +0 -51
  680. package/src/security/safe-fetch.ts +0 -113
  681. package/src/security/sensitive-files.ts +0 -24
  682. package/src/skills/platform-skills.ts +0 -233
  683. package/src/staleness/git-staleness.ts +0 -66
  684. package/src/storage/db.ts +0 -110
  685. package/src/storage/edge-store.ts +0 -103
  686. package/src/storage/file-cache.ts +0 -78
  687. package/src/storage/fts-store.ts +0 -385
  688. package/src/storage/node-store.ts +0 -209
  689. package/src/storage/schema.ts +0 -171
  690. package/src/storage/suppressions.ts +0 -145
  691. package/src/storage/unlinked-refs.ts +0 -117
  692. package/src/types.ts +0 -197
  693. package/src/validation/extraction-validator.ts +0 -54
  694. package/src/watch/watcher.ts +0 -160
  695. package/src/web/analyze-api.ts +0 -146
  696. package/src/web/api.ts +0 -584
  697. package/src/web/async-jobs.ts +0 -109
  698. package/src/web/mcp-http.ts +0 -227
  699. package/src/web/react-ui.ts +0 -78
  700. package/src/web/server.ts +0 -90
  701. package/src/web/ui/index.html +0 -204
  702. package/src/wiki/gist-publisher.ts +0 -76
  703. package/src/wiki/prompt-builder.ts +0 -35
  704. package/src/wiki/providers.ts +0 -134
  705. package/src/wiki/wiki-generator.ts +0 -223
  706. package/src/wiki/wiki-store.ts +0 -49
  707. package/tsconfig.json +0 -11
  708. package/vitest.config.ts +0 -20
@@ -1,110 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { topologicalLevelSort } from '../../graph/topo-sort.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-topo-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: Database.Database, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'File', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(db: Database.Database, src: string, tgt: string) {
20
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'IMPORTS', 'EXTRACTED', 1.0)`)
21
- .run(`${src}_${tgt}`, src, tgt);
22
- }
23
-
24
- describe('topologicalLevelSort', () => {
25
- it('returns empty levels and 0 cycleCount for empty graph', () => {
26
- const db = makeTempDb();
27
- const result = topologicalLevelSort(db);
28
- expect(result.levels).toEqual([]);
29
- expect(result.cycleCount).toBe(0);
30
- db.close();
31
- });
32
-
33
- it('returns single level for single node with no edges', () => {
34
- const db = makeTempDb();
35
- insertNode(db, 'a');
36
- const result = topologicalLevelSort(db);
37
- expect(result.levels.length).toBe(1);
38
- expect(result.levels[0]).toContain('a');
39
- expect(result.cycleCount).toBe(0);
40
- db.close();
41
- });
42
-
43
- it('orders a linear chain leaf-first: a->b->c => [c, b, a]', () => {
44
- const db = makeTempDb();
45
- insertNode(db, 'a');
46
- insertNode(db, 'b');
47
- insertNode(db, 'c');
48
- insertEdge(db, 'a', 'b');
49
- insertEdge(db, 'b', 'c');
50
- const result = topologicalLevelSort(db);
51
- // c has no outgoing IMPORTS => level 0, then b, then a
52
- expect(result.cycleCount).toBe(0);
53
- expect(result.levels.length).toBeGreaterThanOrEqual(2);
54
- const allNodes = result.levels.flat();
55
- expect(allNodes).toContain('a');
56
- expect(allNodes).toContain('b');
57
- expect(allNodes).toContain('c');
58
- // leaf (c) must appear before root (a)
59
- const levelC = result.levels.findIndex(l => l.includes('c'));
60
- const levelA = result.levels.findIndex(l => l.includes('a'));
61
- expect(levelC).toBeLessThan(levelA);
62
- db.close();
63
- });
64
-
65
- it('puts independent nodes in level 0', () => {
66
- const db = makeTempDb();
67
- insertNode(db, 'x');
68
- insertNode(db, 'y');
69
- // no edges
70
- const result = topologicalLevelSort(db);
71
- expect(result.levels.length).toBe(1);
72
- expect(result.levels[0]).toContain('x');
73
- expect(result.levels[0]).toContain('y');
74
- expect(result.cycleCount).toBe(0);
75
- db.close();
76
- });
77
-
78
- it('detects a cycle and appends cycle nodes at end', () => {
79
- const db = makeTempDb();
80
- insertNode(db, 'a');
81
- insertNode(db, 'b');
82
- insertEdge(db, 'a', 'b');
83
- insertEdge(db, 'b', 'a');
84
- const result = topologicalLevelSort(db);
85
- expect(result.cycleCount).toBeGreaterThan(0);
86
- // cycle nodes must still appear somewhere in levels
87
- const allNodes = result.levels.flat();
88
- expect(allNodes).toContain('a');
89
- expect(allNodes).toContain('b');
90
- db.close();
91
- });
92
-
93
- it('handles diamond dependency: a->b, a->c, b->d, c->d', () => {
94
- const db = makeTempDb();
95
- ['a', 'b', 'c', 'd'].forEach(n => insertNode(db, n));
96
- insertEdge(db, 'a', 'b');
97
- insertEdge(db, 'a', 'c');
98
- insertEdge(db, 'b', 'd');
99
- insertEdge(db, 'c', 'd');
100
- const result = topologicalLevelSort(db);
101
- expect(result.cycleCount).toBe(0);
102
- const allNodes = result.levels.flat();
103
- expect(allNodes.sort()).toEqual(['a', 'b', 'c', 'd'].sort());
104
- // d must appear in earlier level than a
105
- const levelD = result.levels.findIndex(l => l.includes('d'));
106
- const levelA = result.levels.findIndex(l => l.includes('a'));
107
- expect(levelD).toBeLessThan(levelA);
108
- db.close();
109
- });
110
- });
@@ -1,101 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { weaklyConnectedComponents } from '../../graph/wcc.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-wcc-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: Database.Database, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(db: Database.Database, src: string, tgt: string) {
20
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
21
- .run(`${src}_${tgt}`, src, tgt);
22
- }
23
-
24
- describe('weaklyConnectedComponents', () => {
25
- it('returns empty array for empty graph', () => {
26
- const db = makeTempDb();
27
- expect(weaklyConnectedComponents(db)).toEqual([]);
28
- db.close();
29
- });
30
-
31
- it('returns single component for single node', () => {
32
- const db = makeTempDb();
33
- insertNode(db, 'a');
34
- const result = weaklyConnectedComponents(db);
35
- expect(result.length).toBe(1);
36
- expect(result[0]).toContain('a');
37
- db.close();
38
- });
39
-
40
- it('returns single component for connected chain a->b->c', () => {
41
- const db = makeTempDb();
42
- insertNode(db, 'a');
43
- insertNode(db, 'b');
44
- insertNode(db, 'c');
45
- insertEdge(db, 'a', 'b');
46
- insertEdge(db, 'b', 'c');
47
- const result = weaklyConnectedComponents(db);
48
- expect(result.length).toBe(1);
49
- expect(result[0].sort()).toEqual(['a', 'b', 'c'].sort());
50
- db.close();
51
- });
52
-
53
- it('returns two components for two disconnected pairs', () => {
54
- const db = makeTempDb();
55
- insertNode(db, 'a');
56
- insertNode(db, 'b');
57
- insertNode(db, 'c');
58
- insertNode(db, 'd');
59
- insertEdge(db, 'a', 'b');
60
- insertEdge(db, 'c', 'd');
61
- const result = weaklyConnectedComponents(db);
62
- expect(result.length).toBe(2);
63
- const allNodes = result.flat().sort();
64
- expect(allNodes).toEqual(['a', 'b', 'c', 'd'].sort());
65
- db.close();
66
- });
67
-
68
- it('treats directed edges as undirected (weak connectivity)', () => {
69
- const db = makeTempDb();
70
- // b->a but they should still be in same WCC
71
- insertNode(db, 'a');
72
- insertNode(db, 'b');
73
- insertEdge(db, 'b', 'a');
74
- const result = weaklyConnectedComponents(db);
75
- expect(result.length).toBe(1);
76
- expect(result[0].sort()).toEqual(['a', 'b'].sort());
77
- db.close();
78
- });
79
-
80
- it('returns isolated nodes as separate components', () => {
81
- const db = makeTempDb();
82
- insertNode(db, 'a');
83
- insertNode(db, 'b');
84
- insertNode(db, 'c');
85
- // no edges — 3 separate components
86
- const result = weaklyConnectedComponents(db);
87
- expect(result.length).toBe(3);
88
- db.close();
89
- });
90
-
91
- it('handles cycle within a component', () => {
92
- const db = makeTempDb();
93
- insertNode(db, 'a');
94
- insertNode(db, 'b');
95
- insertEdge(db, 'a', 'b');
96
- insertEdge(db, 'b', 'a');
97
- const result = weaklyConnectedComponents(db);
98
- expect(result.length).toBe(1);
99
- db.close();
100
- });
101
- });
@@ -1,47 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { extractGrpcContracts, type GrpcContract } from '../../groups/grpc-extractor.js';
3
-
4
- const PROTO_SOURCE = `
5
- syntax = "proto3";
6
- package payments;
7
-
8
- service PaymentService {
9
- rpc ProcessPayment (PaymentRequest) returns (PaymentResponse);
10
- rpc RefundPayment (RefundRequest) returns (RefundResponse);
11
- }
12
-
13
- message PaymentRequest { string amount = 1; }
14
- message PaymentResponse { bool success = 1; }
15
- `;
16
-
17
- const GO_GRPC_SOURCE = `
18
- conn, err := grpc.Dial("localhost:50051", grpc.WithInsecure())
19
- client := pb.NewPaymentServiceClient(conn)
20
- resp, err := client.ProcessPayment(ctx, req)
21
- `;
22
-
23
- describe('extractGrpcContracts', () => {
24
- it('extracts service definitions from proto files', () => {
25
- const result = extractGrpcContracts(PROTO_SOURCE, '/api.proto');
26
- const services = result.filter(c => c.role === 'provider');
27
- expect(services.some(s => s.serviceName === 'PaymentService')).toBe(true);
28
- });
29
-
30
- it('extracts RPC method names', () => {
31
- const result = extractGrpcContracts(PROTO_SOURCE, '/api.proto');
32
- const methods = result.flatMap(c => c.methods);
33
- expect(methods).toContain('ProcessPayment');
34
- expect(methods).toContain('RefundPayment');
35
- });
36
-
37
- it('detects consumer pattern in Go gRPC client code', () => {
38
- const result = extractGrpcContracts(GO_GRPC_SOURCE, '/client.go');
39
- const consumers = result.filter(c => c.role === 'consumer');
40
- expect(consumers.length).toBeGreaterThan(0);
41
- });
42
-
43
- it('returns empty for unrelated source', () => {
44
- const result = extractGrpcContracts('const x = 1;', '/utils.ts');
45
- expect(result).toHaveLength(0);
46
- });
47
- });
@@ -1,86 +0,0 @@
1
- import { describe, it, expect, beforeAll, afterAll } from 'vitest';
2
- import { detectServiceBoundaries, assignService } from '../../groups/service-boundary.js';
3
- import { mkdtempSync, mkdirSync, writeFileSync, rmSync } from 'fs';
4
- import { join } from 'path';
5
- import { tmpdir } from 'os';
6
-
7
- let tmpRoot: string;
8
-
9
- beforeAll(() => {
10
- tmpRoot = mkdtempSync(join(tmpdir(), 'monograph-svc-boundary-test-'));
11
- // service-a: has package.json
12
- mkdirSync(join(tmpRoot, 'service-a'));
13
- writeFileSync(join(tmpRoot, 'service-a', 'package.json'), JSON.stringify({ name: 'service-a' }));
14
- mkdirSync(join(tmpRoot, 'service-a', 'src'));
15
- writeFileSync(join(tmpRoot, 'service-a', 'src', 'index.ts'), '');
16
-
17
- // service-b: has Dockerfile
18
- mkdirSync(join(tmpRoot, 'service-b'));
19
- writeFileSync(join(tmpRoot, 'service-b', 'Dockerfile'), 'FROM node:20');
20
- mkdirSync(join(tmpRoot, 'service-b', 'lib'));
21
- writeFileSync(join(tmpRoot, 'service-b', 'lib', 'main.ts'), '');
22
-
23
- // service-c: has go.mod
24
- mkdirSync(join(tmpRoot, 'service-c'));
25
- writeFileSync(join(tmpRoot, 'service-c', 'go.mod'), 'module github.com/example/service-c');
26
-
27
- // shared: no markers
28
- mkdirSync(join(tmpRoot, 'shared'));
29
- writeFileSync(join(tmpRoot, 'shared', 'utils.ts'), '');
30
- });
31
-
32
- afterAll(() => {
33
- rmSync(tmpRoot, { recursive: true, force: true });
34
- });
35
-
36
- describe('detectServiceBoundaries', () => {
37
- it('detects directories with service markers', () => {
38
- const boundaries = detectServiceBoundaries(tmpRoot);
39
- expect(boundaries.length).toBeGreaterThanOrEqual(2);
40
- const paths = boundaries.map(b => b.servicePath);
41
- expect(paths.some(p => p.includes('service-a'))).toBe(true);
42
- expect(paths.some(p => p.includes('service-b') || p.includes('service-c'))).toBe(true);
43
- db?.close?.();
44
- });
45
-
46
- it('returns ServiceBoundary objects with required fields', () => {
47
- const boundaries = detectServiceBoundaries(tmpRoot);
48
- for (const b of boundaries) {
49
- expect(typeof b.servicePath).toBe('string');
50
- expect(typeof b.serviceName).toBe('string');
51
- expect(Array.isArray(b.markers)).toBe(true);
52
- expect(typeof b.confidence).toBe('number');
53
- expect(b.confidence).toBeGreaterThan(0);
54
- expect(b.confidence).toBeLessThanOrEqual(1);
55
- }
56
- });
57
-
58
- it('returns empty array when no markers found', () => {
59
- const emptyDir = mkdtempSync(join(tmpdir(), 'monograph-empty-svc-'));
60
- const boundaries = detectServiceBoundaries(emptyDir);
61
- expect(boundaries).toEqual([]);
62
- rmSync(emptyDir, { recursive: true, force: true });
63
- });
64
- });
65
-
66
- // Workaround: db was referenced accidentally above — ignore it
67
- const db = null;
68
-
69
- describe('assignService', () => {
70
- it('returns the matching service for a file inside a service directory', () => {
71
- const boundaries = detectServiceBoundaries(tmpRoot);
72
- const file = join(tmpRoot, 'service-a', 'src', 'index.ts');
73
- const result = assignService(file, boundaries);
74
- expect(result).toBeDefined();
75
- expect(result?.servicePath).toContain('service-a');
76
- });
77
-
78
- it('returns undefined for a file outside any service boundary', () => {
79
- const boundaries = detectServiceBoundaries(tmpRoot);
80
- const file = join(tmpRoot, 'shared', 'utils.ts');
81
- const result = assignService(file, boundaries);
82
- // shared has no markers so may be undefined (depends on whether shared is detected)
83
- // The test just asserts the function runs without throwing
84
- expect(typeof result === 'undefined' || typeof result === 'object').toBe(true);
85
- });
86
- });
@@ -1,43 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { extractTopicContracts } from '../../groups/topic-extractor.js';
3
-
4
- const KAFKA_PRODUCER_TS = `
5
- producer.send({ topic: 'order.created', messages: [{ value: JSON.stringify(order) }] });
6
- await producer.send({ topic: 'payment.processed', messages: [{ key: id, value: body }] });
7
- `;
8
-
9
- const KAFKA_CONSUMER_TS = `
10
- await consumer.subscribe({ topic: 'order.created', fromBeginning: true });
11
- consumer.run({ eachMessage: async ({ topic, message }) => { } });
12
- `;
13
-
14
- const RABBITMQ_TS = `
15
- channel.assertExchange('inventory.exchange', 'topic');
16
- channel.publish('inventory.exchange', 'product.updated', Buffer.from(msg));
17
- channel.bindQueue(q.queue, 'inventory.exchange', 'product.#');
18
- `;
19
-
20
- describe('extractTopicContracts', () => {
21
- it('detects Kafka producer topics', () => {
22
- const result = extractTopicContracts(KAFKA_PRODUCER_TS, '/producer.ts');
23
- const topics = result.filter(c => c.role === 'producer').map(c => c.topicName);
24
- expect(topics).toContain('order.created');
25
- expect(topics).toContain('payment.processed');
26
- });
27
-
28
- it('detects Kafka consumer topics', () => {
29
- const result = extractTopicContracts(KAFKA_CONSUMER_TS, '/consumer.ts');
30
- const topics = result.filter(c => c.role === 'consumer').map(c => c.topicName);
31
- expect(topics).toContain('order.created');
32
- });
33
-
34
- it('detects RabbitMQ exchange/routing key patterns', () => {
35
- const result = extractTopicContracts(RABBITMQ_TS, '/rabbit.ts');
36
- expect(result.some(c => c.topicName.includes('inventory'))).toBe(true);
37
- });
38
-
39
- it('returns empty for unrelated source', () => {
40
- const result = extractTopicContracts('const x = 1;', '/utils.ts');
41
- expect(result).toHaveLength(0);
42
- });
43
- });
@@ -1,128 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { validateGitUrl, extractRepoName, getCloneDir } from '../../ingest/git-clone.js';
3
- import os from 'os';
4
- import path from 'path';
5
-
6
- // ── validateGitUrl ─────────────────────────────────────────────────────────────
7
-
8
- describe('validateGitUrl', () => {
9
- // ── Allowed ──────────────────────────────────────────────────────────────────
10
- it('allows https:// URLs', () => {
11
- expect(() => validateGitUrl('https://github.com/org/repo.git')).not.toThrow();
12
- });
13
-
14
- it('allows http:// URLs', () => {
15
- expect(() => validateGitUrl('http://github.com/org/repo.git')).not.toThrow();
16
- });
17
-
18
- // ── Scheme blocks ─────────────────────────────────────────────────────────────
19
- it('blocks git:// scheme', () => {
20
- expect(() => validateGitUrl('git://github.com/org/repo.git')).toThrow();
21
- });
22
-
23
- it('blocks ssh:// scheme', () => {
24
- expect(() => validateGitUrl('ssh://github.com/org/repo.git')).toThrow();
25
- });
26
-
27
- it('blocks file:// scheme', () => {
28
- expect(() => validateGitUrl('file:///etc/passwd')).toThrow();
29
- });
30
-
31
- // ── Blocked hostnames ─────────────────────────────────────────────────────────
32
- it('blocks localhost', () => {
33
- expect(() => validateGitUrl('https://localhost/repo')).toThrow();
34
- });
35
-
36
- it('blocks metadata.google.internal', () => {
37
- expect(() => validateGitUrl('https://metadata.google.internal/repo')).toThrow();
38
- });
39
-
40
- it('blocks metadata.azure.com', () => {
41
- expect(() => validateGitUrl('https://metadata.azure.com/repo')).toThrow();
42
- });
43
-
44
- // ── Private IPv4 ──────────────────────────────────────────────────────────────
45
- it('blocks 127.0.0.1', () => {
46
- expect(() => validateGitUrl('https://127.0.0.1/repo')).toThrow();
47
- });
48
-
49
- it('blocks 10.0.0.1', () => {
50
- expect(() => validateGitUrl('https://10.0.0.1/repo')).toThrow();
51
- });
52
-
53
- it('blocks 192.168.1.1', () => {
54
- expect(() => validateGitUrl('https://192.168.1.1/repo')).toThrow();
55
- });
56
-
57
- it('blocks 172.16.0.1 (RFC1918)', () => {
58
- expect(() => validateGitUrl('https://172.16.0.1/repo')).toThrow();
59
- });
60
-
61
- it('blocks 172.31.255.255 (RFC1918)', () => {
62
- expect(() => validateGitUrl('https://172.31.255.255/repo')).toThrow();
63
- });
64
-
65
- it('blocks 169.254.169.254 (link-local)', () => {
66
- expect(() => validateGitUrl('https://169.254.169.254/repo')).toThrow();
67
- });
68
-
69
- // ── IPv6 private ──────────────────────────────────────────────────────────────
70
- it('blocks IPv6 loopback ::1', () => {
71
- expect(() => validateGitUrl('https://[::1]/repo')).toThrow();
72
- });
73
-
74
- it('blocks IPv6 Unique Local fc00::', () => {
75
- expect(() => validateGitUrl('https://[fc00::1]/repo')).toThrow();
76
- });
77
-
78
- it('blocks IPv6 link-local fe80::', () => {
79
- expect(() => validateGitUrl('https://[fe80::1]/repo')).toThrow();
80
- });
81
-
82
- it('blocks IPv4-mapped IPv6 ::ffff:127.0.0.1', () => {
83
- expect(() => validateGitUrl('https://[::ffff:127.0.0.1]/repo')).toThrow();
84
- });
85
-
86
- // ── Numeric IP encodings ───────────────────────────────────────────────────────
87
- it('blocks decimal IP encoding 2130706433 (127.0.0.1)', () => {
88
- expect(() => validateGitUrl('https://2130706433/repo')).toThrow();
89
- });
90
-
91
- it('blocks hex IP encoding 0x7f000001 (127.0.0.1)', () => {
92
- expect(() => validateGitUrl('https://0x7f000001/repo')).toThrow();
93
- });
94
-
95
- // ── Invalid URL ───────────────────────────────────────────────────────────────
96
- it('throws for an invalid URL', () => {
97
- expect(() => validateGitUrl('not a url')).toThrow();
98
- });
99
- });
100
-
101
- // ── extractRepoName ────────────────────────────────────────────────────────────
102
-
103
- describe('extractRepoName', () => {
104
- it('extracts repo name from https URL with .git suffix', () => {
105
- expect(extractRepoName('https://github.com/org/my-repo.git')).toBe('my-repo');
106
- });
107
-
108
- it('extracts repo name from https URL without .git suffix', () => {
109
- expect(extractRepoName('https://github.com/org/my-repo')).toBe('my-repo');
110
- });
111
-
112
- it('extracts repo name from https URL with trailing slash', () => {
113
- expect(extractRepoName('https://github.com/org/my-repo/')).toBe('my-repo');
114
- });
115
-
116
- it('extracts repo name from SSH URL', () => {
117
- expect(extractRepoName('git@github.com:org/my-repo.git')).toBe('my-repo');
118
- });
119
- });
120
-
121
- // ── getCloneDir ────────────────────────────────────────────────────────────────
122
-
123
- describe('getCloneDir', () => {
124
- it('returns path under ~/.monograph/repos/<name>', () => {
125
- const expected = path.join(os.homedir(), '.monograph', 'repos', 'my-repo');
126
- expect(getCloneDir('my-repo')).toBe(expected);
127
- });
128
- });
@@ -1,123 +0,0 @@
1
- import { describe, it, expect, afterEach } from 'vitest';
2
- import { saveQueryResult } from '../../ingest/query-memory.js';
3
- import { mkdtempSync, readFileSync, rmSync } from 'fs';
4
- import { tmpdir } from 'os';
5
- import { join } from 'path';
6
-
7
- function makeTempDir() {
8
- return mkdtempSync(join(tmpdir(), 'monograph-qmem-test-'));
9
- }
10
-
11
- describe('saveQueryResult', () => {
12
- const dirs: string[] = [];
13
- afterEach(() => {
14
- for (const d of dirs) {
15
- try { rmSync(d, { recursive: true }); } catch { /* ignore */ }
16
- }
17
- dirs.length = 0;
18
- });
19
-
20
- it('creates the memory directory if it does not exist', () => {
21
- const memDir = join(makeTempDir(), 'sub', 'memory');
22
- dirs.push(memDir.split('/').slice(0, -2).join('/'));
23
- saveQueryResult({ question: 'What is X?', answer: 'X is Y.', memoryDir: memDir });
24
- const { existsSync } = require('fs');
25
- expect(existsSync(memDir)).toBe(true);
26
- });
27
-
28
- it('writes a Markdown file with YAML front-matter', () => {
29
- const memDir = makeTempDir();
30
- dirs.push(memDir);
31
- const result = saveQueryResult({ question: 'What is X?', answer: 'X is Y.', memoryDir: memDir });
32
- const content = readFileSync(result.filePath, 'utf-8');
33
- expect(content).toContain('---');
34
- expect(content).toContain('type: "query"');
35
- expect(content).toContain('question: "What is X?"');
36
- expect(content).toContain('contributor: "monograph"');
37
- expect(content).toContain('# Q: What is X?');
38
- expect(content).toContain('X is Y.');
39
- });
40
-
41
- it('includes a date field in the front-matter', () => {
42
- const memDir = makeTempDir();
43
- dirs.push(memDir);
44
- const result = saveQueryResult({ question: 'Test?', answer: 'Yes.', memoryDir: memDir });
45
- const content = readFileSync(result.filePath, 'utf-8');
46
- expect(content).toMatch(/date: "\d{4}-\d{2}-\d{2}/);
47
- });
48
-
49
- it('includes source_nodes in front-matter when provided', () => {
50
- const memDir = makeTempDir();
51
- dirs.push(memDir);
52
- const result = saveQueryResult({
53
- question: 'Who calls auth?',
54
- answer: 'login calls auth.',
55
- memoryDir: memDir,
56
- sourceNodes: ['login', 'auth'],
57
- });
58
- const content = readFileSync(result.filePath, 'utf-8');
59
- expect(content).toContain('source_nodes:');
60
- expect(content).toContain('"login"');
61
- expect(content).toContain('"auth"');
62
- });
63
-
64
- it('includes Source Nodes section in body when sourceNodes provided', () => {
65
- const memDir = makeTempDir();
66
- dirs.push(memDir);
67
- const result = saveQueryResult({
68
- question: 'Q',
69
- answer: 'A',
70
- memoryDir: memDir,
71
- sourceNodes: ['nodeA'],
72
- });
73
- const content = readFileSync(result.filePath, 'utf-8');
74
- expect(content).toContain('## Source Nodes');
75
- expect(content).toContain('- nodeA');
76
- });
77
-
78
- it('limits source_nodes to 10 entries in front-matter', () => {
79
- const memDir = makeTempDir();
80
- dirs.push(memDir);
81
- const manyNodes = Array.from({ length: 15 }, (_, i) => `node${i}`);
82
- const result = saveQueryResult({
83
- question: 'Q',
84
- answer: 'A',
85
- memoryDir: memDir,
86
- sourceNodes: manyNodes,
87
- });
88
- const content = readFileSync(result.filePath, 'utf-8');
89
- // front-matter line has at most 10 quoted node names
90
- const fmLine = content.split('\n').find(l => l.startsWith('source_nodes:'))!;
91
- const matches = fmLine.match(/"node\d+"/g) ?? [];
92
- expect(matches.length).toBeLessThanOrEqual(10);
93
- });
94
-
95
- it('uses custom queryType in front-matter', () => {
96
- const memDir = makeTempDir();
97
- dirs.push(memDir);
98
- const result = saveQueryResult({ question: 'Q', answer: 'A', memoryDir: memDir, queryType: 'impact' });
99
- const content = readFileSync(result.filePath, 'utf-8');
100
- expect(content).toContain('type: "impact"');
101
- });
102
-
103
- it('returns the written file path and writtenAt timestamp', () => {
104
- const memDir = makeTempDir();
105
- dirs.push(memDir);
106
- const before = new Date().toISOString();
107
- const result = saveQueryResult({ question: 'Q', answer: 'A', memoryDir: memDir });
108
- const after = new Date().toISOString();
109
- expect(result.filePath).toContain(memDir);
110
- expect(result.filePath.endsWith('.md')).toBe(true);
111
- expect(result.writtenAt >= before).toBe(true);
112
- expect(result.writtenAt <= after).toBe(true);
113
- });
114
-
115
- it('escapes double quotes in the question', () => {
116
- const memDir = makeTempDir();
117
- dirs.push(memDir);
118
- const result = saveQueryResult({ question: 'Say "hello"?', answer: 'Hi.', memoryDir: memDir });
119
- const content = readFileSync(result.filePath, 'utf-8');
120
- // YAML value should escape the inner quotes
121
- expect(content).toContain('\\"hello\\"');
122
- });
123
- });