@monoes/monograph 1.5.6 → 1.5.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (708) hide show
  1. package/README.md +31 -15
  2. package/dist/src/analysis/changed-files.d.ts +3 -0
  3. package/dist/src/analysis/changed-files.d.ts.map +1 -1
  4. package/dist/src/analysis/changed-files.js +11 -9
  5. package/dist/src/analysis/changed-files.js.map +1 -1
  6. package/dist/src/analysis/changed-workspaces.d.ts.map +1 -1
  7. package/dist/src/analysis/changed-workspaces.js +2 -9
  8. package/dist/src/analysis/changed-workspaces.js.map +1 -1
  9. package/dist/src/analysis/git-changed-files.d.ts +3 -0
  10. package/dist/src/analysis/git-changed-files.d.ts.map +1 -1
  11. package/dist/src/analysis/git-changed-files.js +17 -12
  12. package/dist/src/analysis/git-changed-files.js.map +1 -1
  13. package/dist/src/analysis/git-ref.d.ts +33 -0
  14. package/dist/src/analysis/git-ref.d.ts.map +1 -0
  15. package/dist/src/analysis/git-ref.js +54 -0
  16. package/dist/src/analysis/git-ref.js.map +1 -0
  17. package/dist/src/analyze/boundary-analysis.d.ts.map +1 -1
  18. package/dist/src/analyze/boundary-analysis.js +42 -42
  19. package/dist/src/analyze/boundary-analysis.js.map +1 -1
  20. package/dist/src/index.d.ts +1 -0
  21. package/dist/src/index.d.ts.map +1 -1
  22. package/dist/src/index.js +1 -0
  23. package/dist/src/index.js.map +1 -1
  24. package/dist/src/lsp/server.d.ts +1 -1
  25. package/dist/src/lsp/server.d.ts.map +1 -1
  26. package/dist/src/lsp/server.js +48 -13
  27. package/dist/src/lsp/server.js.map +1 -1
  28. package/dist/src/mcp-tools/api-impact.d.ts.map +1 -1
  29. package/dist/src/mcp-tools/api-impact.js +1 -16
  30. package/dist/src/mcp-tools/api-impact.js.map +1 -1
  31. package/dist/src/mcp-tools/context.d.ts.map +1 -1
  32. package/dist/src/mcp-tools/context.js +12 -23
  33. package/dist/src/mcp-tools/context.js.map +1 -1
  34. package/dist/src/mcp-tools/explain.d.ts.map +1 -1
  35. package/dist/src/mcp-tools/explain.js +15 -20
  36. package/dist/src/mcp-tools/explain.js.map +1 -1
  37. package/dist/src/mcp-tools/graph-query.d.ts.map +1 -1
  38. package/dist/src/mcp-tools/graph-query.js +10 -19
  39. package/dist/src/mcp-tools/graph-query.js.map +1 -1
  40. package/dist/src/mcp-tools/impact.d.ts.map +1 -1
  41. package/dist/src/mcp-tools/impact.js +38 -41
  42. package/dist/src/mcp-tools/impact.js.map +1 -1
  43. package/dist/src/mcp-tools/neighbors.d.ts.map +1 -1
  44. package/dist/src/mcp-tools/neighbors.js +4 -22
  45. package/dist/src/mcp-tools/neighbors.js.map +1 -1
  46. package/dist/src/mcp-tools/query.d.ts.map +1 -1
  47. package/dist/src/mcp-tools/query.js +14 -9
  48. package/dist/src/mcp-tools/query.js.map +1 -1
  49. package/dist/src/mcp-tools/rename.d.ts.map +1 -1
  50. package/dist/src/mcp-tools/rename.js +3 -20
  51. package/dist/src/mcp-tools/rename.js.map +1 -1
  52. package/dist/src/parsers/c.d.ts.map +1 -1
  53. package/dist/src/parsers/c.js +12 -0
  54. package/dist/src/parsers/c.js.map +1 -1
  55. package/dist/src/parsers/extractor.d.ts.map +1 -1
  56. package/dist/src/parsers/extractor.js +2 -1
  57. package/dist/src/parsers/extractor.js.map +1 -1
  58. package/dist/src/parsers/go.d.ts.map +1 -1
  59. package/dist/src/parsers/go.js +19 -1
  60. package/dist/src/parsers/go.js.map +1 -1
  61. package/dist/src/parsers/language-config.d.ts +4 -0
  62. package/dist/src/parsers/language-config.d.ts.map +1 -1
  63. package/dist/src/parsers/language-parsers.d.ts.map +1 -1
  64. package/dist/src/parsers/language-parsers.js +3 -1
  65. package/dist/src/parsers/language-parsers.js.map +1 -1
  66. package/dist/src/parsers/loader.d.ts +1 -0
  67. package/dist/src/parsers/loader.d.ts.map +1 -1
  68. package/dist/src/parsers/loader.js +161 -20
  69. package/dist/src/parsers/loader.js.map +1 -1
  70. package/dist/src/parsers/python.d.ts.map +1 -1
  71. package/dist/src/parsers/python.js +6 -0
  72. package/dist/src/parsers/python.js.map +1 -1
  73. package/dist/src/parsers/rust.d.ts.map +1 -1
  74. package/dist/src/parsers/rust.js +10 -0
  75. package/dist/src/parsers/rust.js.map +1 -1
  76. package/dist/src/pipeline/orchestrator.d.ts.map +1 -1
  77. package/dist/src/pipeline/orchestrator.js +17 -0
  78. package/dist/src/pipeline/orchestrator.js.map +1 -1
  79. package/dist/src/pipeline/phases/pdf-parse.d.ts.map +1 -1
  80. package/dist/src/pipeline/phases/pdf-parse.js +10 -11
  81. package/dist/src/pipeline/phases/pdf-parse.js.map +1 -1
  82. package/dist/src/storage/edge-store.d.ts +1 -0
  83. package/dist/src/storage/edge-store.d.ts.map +1 -1
  84. package/dist/src/storage/edge-store.js +5 -8
  85. package/dist/src/storage/edge-store.js.map +1 -1
  86. package/dist/src/storage/node-store.d.ts +1 -0
  87. package/dist/src/storage/node-store.d.ts.map +1 -1
  88. package/dist/src/storage/node-store.js +11 -12
  89. package/dist/src/storage/node-store.js.map +1 -1
  90. package/dist/src/storage/schema.d.ts.map +1 -1
  91. package/dist/src/storage/schema.js +6 -0
  92. package/dist/src/storage/schema.js.map +1 -1
  93. package/dist/src/storage/utils.d.ts +11 -0
  94. package/dist/src/storage/utils.d.ts.map +1 -0
  95. package/dist/src/storage/utils.js +24 -0
  96. package/dist/src/storage/utils.js.map +1 -0
  97. package/dist/tsconfig.tsbuildinfo +1 -1
  98. package/package.json +12 -9
  99. package/.monomind/data/ranked-context.json +0 -5
  100. package/.monomind/loops/mastermind-review-1782162423447.json +0 -16
  101. package/.monomind/sessions/session-1777578175215.json +0 -15
  102. package/.monomind/sessions/session-1777823684507.json +0 -15
  103. package/.monomind/sessions/session-1777928944749.json +0 -15
  104. package/.monomind/sessions/session-1778052902210.json +0 -15
  105. package/.monomind/sessions/session-1778056744636.json +0 -15
  106. package/.monomind/sessions/session-1778061077599.json +0 -15
  107. package/.monomind/sessions/session-1778102154764.json +0 -15
  108. package/__tests__/analysis/shape-extractor.test.ts +0 -124
  109. package/__tests__/analysis/surprise-scorer.test.ts +0 -154
  110. package/__tests__/cache/extraction-cache.test.ts +0 -45
  111. package/__tests__/cli/ai-context.test.ts +0 -175
  112. package/__tests__/cli/augment.test.ts +0 -128
  113. package/__tests__/cli/doctor.test.ts +0 -125
  114. package/__tests__/cli/eval-server.test.ts +0 -89
  115. package/__tests__/cli/setup.test.ts +0 -178
  116. package/__tests__/cli/skill-gen.test.ts +0 -280
  117. package/__tests__/export/formats.test.ts +0 -82
  118. package/__tests__/fixtures/sample.c +0 -25
  119. package/__tests__/fixtures/sample.cpp +0 -32
  120. package/__tests__/fixtures/sample.dart +0 -34
  121. package/__tests__/fixtures/sample.kt +0 -30
  122. package/__tests__/fixtures/sample.php +0 -30
  123. package/__tests__/fixtures/sample.py +0 -11
  124. package/__tests__/fixtures/sample.rb +0 -26
  125. package/__tests__/fixtures/sample.swift +0 -42
  126. package/__tests__/fixtures/sample.ts +0 -17
  127. package/__tests__/fixtures/sample.vue +0 -40
  128. package/__tests__/groups/group-search.test.ts +0 -221
  129. package/__tests__/groups/group-sync.test.ts +0 -336
  130. package/__tests__/integration/build-atomicity.test.ts +0 -61
  131. package/__tests__/integration/call-attribution.test.ts +0 -116
  132. package/__tests__/integration/full-pipeline.test.ts +0 -64
  133. package/__tests__/integration/graph-report-freshness.test.ts +0 -53
  134. package/__tests__/integration/incremental-build.test.ts +0 -103
  135. package/__tests__/mcp-resources/resources.test.ts +0 -256
  136. package/__tests__/mcp-tools/api-impact.test.ts +0 -188
  137. package/__tests__/mcp-tools/context.test.ts +0 -130
  138. package/__tests__/mcp-tools/cypher.test.ts +0 -258
  139. package/__tests__/mcp-tools/detect-changes.test.ts +0 -114
  140. package/__tests__/mcp-tools/impact.test.ts +0 -133
  141. package/__tests__/mcp-tools/rename.test.ts +0 -117
  142. package/__tests__/mcp-tools/route-map.test.ts +0 -237
  143. package/__tests__/mcp-tools/shape-check.test.ts +0 -202
  144. package/__tests__/mcp-tools/tool-map.test.ts +0 -135
  145. package/__tests__/parsers/c.test.ts +0 -28
  146. package/__tests__/parsers/cpp.test.ts +0 -28
  147. package/__tests__/parsers/csharp.test.ts +0 -62
  148. package/__tests__/parsers/dart.test.ts +0 -28
  149. package/__tests__/parsers/kotlin.test.ts +0 -28
  150. package/__tests__/parsers/loader.test.ts +0 -14
  151. package/__tests__/parsers/php.test.ts +0 -28
  152. package/__tests__/parsers/python.test.ts +0 -32
  153. package/__tests__/parsers/ruby.test.ts +0 -33
  154. package/__tests__/parsers/swift.test.ts +0 -28
  155. package/__tests__/parsers/typescript.test.ts +0 -45
  156. package/__tests__/parsers/vue.test.ts +0 -28
  157. package/__tests__/pipeline/analysis.test.ts +0 -58
  158. package/__tests__/pipeline/phases/corpus-check.test.ts +0 -26
  159. package/__tests__/pipeline/phases/evidence.test.ts +0 -41
  160. package/__tests__/pipeline/phases/field-access.test.ts +0 -22
  161. package/__tests__/pipeline/phases/leiden.test.ts +0 -72
  162. package/__tests__/pipeline/phases/markdown.test.ts +0 -84
  163. package/__tests__/pipeline/phases/middleware-extractor.test.ts +0 -131
  164. package/__tests__/pipeline/phases/orm.test.ts +0 -379
  165. package/__tests__/pipeline/phases/processes.test.ts +0 -191
  166. package/__tests__/pipeline/phases/routes.test.ts +0 -195
  167. package/__tests__/pipeline/phases/scope-resolution.test.ts +0 -133
  168. package/__tests__/pipeline/phases/tools.test.ts +0 -161
  169. package/__tests__/pipeline/phases/variables.test.ts +0 -30
  170. package/__tests__/pipeline/phases/wildcard-synthesis.test.ts +0 -207
  171. package/__tests__/pipeline/phases.test.ts +0 -41
  172. package/__tests__/pipeline/runner.test.ts +0 -28
  173. package/__tests__/registry/repo-registry.test.ts +0 -127
  174. package/__tests__/reporting/graph-report.suggest.test.ts +0 -36
  175. package/__tests__/reporting/graph-report.test.ts +0 -165
  176. package/__tests__/search/ast-chunker.test.ts +0 -63
  177. package/__tests__/search/rrf.test.ts +0 -95
  178. package/__tests__/security/safe-fetch.test.ts +0 -41
  179. package/__tests__/security/sensitive-files.test.ts +0 -32
  180. package/__tests__/setup.ts +0 -1
  181. package/__tests__/skills/platform-skills.test.ts +0 -63
  182. package/__tests__/staleness/git-staleness.test.ts +0 -107
  183. package/__tests__/storage/db.test.ts +0 -37
  184. package/__tests__/storage/evidence-roundtrip.test.ts +0 -89
  185. package/__tests__/storage/stores.test.ts +0 -165
  186. package/__tests__/types.test.ts +0 -13
  187. package/__tests__/validation/extraction-validator.test.ts +0 -48
  188. package/__tests__/watch/watcher.test.ts +0 -31
  189. package/__tests__/web/analyze-api.test.ts +0 -66
  190. package/__tests__/web/api.test.ts +0 -210
  191. package/__tests__/web/mcp-http.test.ts +0 -67
  192. package/__tests__/web/react-ui.test.ts +0 -43
  193. package/__tests__/wiki/gist-publisher.test.ts +0 -66
  194. package/__tests__/wiki/providers.test.ts +0 -69
  195. package/__tests__/wiki/wiki-generator.test.ts +0 -260
  196. package/dist/src/fix/deps.d.ts +0 -14
  197. package/dist/src/fix/deps.d.ts.map +0 -1
  198. package/dist/src/fix/deps.js +0 -47
  199. package/dist/src/fix/deps.js.map +0 -1
  200. package/dist/src/fix/enum-members.d.ts +0 -20
  201. package/dist/src/fix/enum-members.d.ts.map +0 -1
  202. package/dist/src/fix/enum-members.js +0 -95
  203. package/dist/src/fix/enum-members.js.map +0 -1
  204. package/dist/src/fix/export-surgery.d.ts +0 -14
  205. package/dist/src/fix/export-surgery.d.ts.map +0 -1
  206. package/dist/src/fix/export-surgery.js +0 -140
  207. package/dist/src/fix/export-surgery.js.map +0 -1
  208. package/dist/src/fix/exports.d.ts +0 -16
  209. package/dist/src/fix/exports.d.ts.map +0 -1
  210. package/dist/src/fix/exports.js +0 -65
  211. package/dist/src/fix/exports.js.map +0 -1
  212. package/dist/src/fix/orchestrator.d.ts +0 -28
  213. package/dist/src/fix/orchestrator.d.ts.map +0 -1
  214. package/dist/src/fix/orchestrator.js +0 -39
  215. package/dist/src/fix/orchestrator.js.map +0 -1
  216. package/src/__tests__/analysis/benchmark.test.ts +0 -59
  217. package/src/__tests__/analysis/cluster-quality.test.ts +0 -106
  218. package/src/__tests__/analysis/corpus-health.test.ts +0 -33
  219. package/src/__tests__/analysis/dependency-health.test.ts +0 -105
  220. package/src/__tests__/analysis/file-classifier.test.ts +0 -50
  221. package/src/__tests__/analysis/node-similarity.test.ts +0 -81
  222. package/src/__tests__/cache/augment-cache.test.ts +0 -55
  223. package/src/__tests__/cli/check-update.test.ts +0 -42
  224. package/src/__tests__/cli/hooks-install.test.ts +0 -56
  225. package/src/__tests__/cli/hooks-marker.test.ts +0 -138
  226. package/src/__tests__/cli/hooks-status.test.ts +0 -42
  227. package/src/__tests__/export/adjacency-matrix.test.ts +0 -116
  228. package/src/__tests__/export/csv.test.ts +0 -39
  229. package/src/__tests__/export/dot.test.ts +0 -86
  230. package/src/__tests__/export/gexf.test.ts +0 -78
  231. package/src/__tests__/export/graphml.test.ts +0 -57
  232. package/src/__tests__/export/mermaid.test.ts +0 -89
  233. package/src/__tests__/graph/betweenness.test.ts +0 -89
  234. package/src/__tests__/graph/cycles.test.ts +0 -131
  235. package/src/__tests__/graph/dead-code.test.ts +0 -174
  236. package/src/__tests__/graph/dfs.test.ts +0 -62
  237. package/src/__tests__/graph/diff-summary.test.ts +0 -83
  238. package/src/__tests__/graph/edge-filter.test.ts +0 -129
  239. package/src/__tests__/graph/import-chain.test.ts +0 -111
  240. package/src/__tests__/graph/merge.test.ts +0 -151
  241. package/src/__tests__/graph/node-search.test.ts +0 -167
  242. package/src/__tests__/graph/normalize-id.test.ts +0 -102
  243. package/src/__tests__/graph/pagerank.test.ts +0 -96
  244. package/src/__tests__/graph/prune.test.ts +0 -110
  245. package/src/__tests__/graph/regex-search.test.ts +0 -166
  246. package/src/__tests__/graph/ripple-impact.test.ts +0 -73
  247. package/src/__tests__/graph/scc.test.ts +0 -85
  248. package/src/__tests__/graph/statistics.test.ts +0 -219
  249. package/src/__tests__/graph/subgraph.test.ts +0 -127
  250. package/src/__tests__/graph/topo-sort.test.ts +0 -110
  251. package/src/__tests__/graph/wcc.test.ts +0 -101
  252. package/src/__tests__/groups/grpc-extractor.test.ts +0 -47
  253. package/src/__tests__/groups/service-boundary.test.ts +0 -86
  254. package/src/__tests__/groups/topic-extractor.test.ts +0 -43
  255. package/src/__tests__/ingest/git-clone.test.ts +0 -128
  256. package/src/__tests__/ingest/query-memory.test.ts +0 -123
  257. package/src/__tests__/ingest/transcribe.test.ts +0 -58
  258. package/src/__tests__/ingest/url-ingest.test.ts +0 -48
  259. package/src/__tests__/mcp-resources/repo-context-resource.test.ts +0 -37
  260. package/src/__tests__/mcp-resources/repos-resource.test.ts +0 -71
  261. package/src/__tests__/mcp-resources/wiki-resource.test.ts +0 -52
  262. package/src/__tests__/mcp-tools/explain.test.ts +0 -46
  263. package/src/__tests__/mcp-tools/graph-query.test.ts +0 -45
  264. package/src/__tests__/mcp-tools/group-sync.test.ts +0 -8
  265. package/src/__tests__/mcp-tools/impact-filtering.test.ts +0 -48
  266. package/src/__tests__/mcp-tools/impact.risk.test.ts +0 -24
  267. package/src/__tests__/mcp-tools/list-repos.test.ts +0 -24
  268. package/src/__tests__/mcp-tools/neighbors.test.ts +0 -48
  269. package/src/__tests__/mcp-tools/query.test.ts +0 -42
  270. package/src/__tests__/parsers/language-parsers.test.ts +0 -52
  271. package/src/__tests__/parsers/named-bindings.test.ts +0 -73
  272. package/src/__tests__/pipeline/cluster-only.test.ts +0 -33
  273. package/src/__tests__/pipeline/phases/bridge-adapters/electron-ipc.test.ts +0 -87
  274. package/src/__tests__/pipeline/phases/bridge-adapters/tauri.test.ts +0 -116
  275. package/src/__tests__/pipeline/phases/bridge-adapters/wails.test.ts +0 -81
  276. package/src/__tests__/pipeline/phases/bridge-resolver.test.ts +0 -110
  277. package/src/__tests__/pipeline/phases/communities.cohesion.test.ts +0 -43
  278. package/src/__tests__/pipeline/phases/community-split.test.ts +0 -30
  279. package/src/__tests__/pipeline/phases/framework-detect.test.ts +0 -65
  280. package/src/__tests__/pipeline/phases/import-resolver.test.ts +0 -64
  281. package/src/__tests__/pipeline/phases/parse-arrow.test.ts +0 -33
  282. package/src/__tests__/pipeline/phases/parse-csharp.test.ts +0 -33
  283. package/src/__tests__/pipeline/phases/scan.monographignore.test.ts +0 -53
  284. package/src/__tests__/pipeline/phases/scan.negation.test.ts +0 -40
  285. package/src/__tests__/pipeline/phases/scope-resolution.go.test.ts +0 -34
  286. package/src/__tests__/pipeline/phases/scope-resolution.java.test.ts +0 -30
  287. package/src/__tests__/pipeline/phases/scope-resolution.rust.test.ts +0 -31
  288. package/src/__tests__/pipeline/phases/suggest-questions.test.ts +0 -46
  289. package/src/__tests__/pipeline/phases/surprises-scoring.test.ts +0 -46
  290. package/src/__tests__/pipeline/phases/variables-phase.test.ts +0 -78
  291. package/src/__tests__/pipeline/phases/wildcard-phase.test.ts +0 -99
  292. package/src/__tests__/pipeline/runner.parallel.test.ts +0 -78
  293. package/src/__tests__/reporting/graph-report-confidence.test.ts +0 -43
  294. package/src/__tests__/reporting/graph-report-gaps.test.ts +0 -41
  295. package/src/__tests__/scope-resolution/call-sites.test.ts +0 -89
  296. package/src/__tests__/scope-resolution/evidence-weights.test.ts +0 -49
  297. package/src/__tests__/search/diacritic.test.ts +0 -23
  298. package/src/__tests__/security/safe-fetch.test.ts +0 -125
  299. package/src/__tests__/skills/platform-skills.extra.test.ts +0 -36
  300. package/src/__tests__/web/api.clusters.test.ts +0 -65
  301. package/src/__tests__/web/api.file.test.ts +0 -44
  302. package/src/__tests__/web/api.grep.test.ts +0 -47
  303. package/src/__tests__/web/api.info.test.ts +0 -18
  304. package/src/__tests__/web/api.jobs.test.ts +0 -47
  305. package/src/__tests__/web/api.progress.test.ts +0 -25
  306. package/src/__tests__/web/api.stream.test.ts +0 -35
  307. package/src/__tests__/wiki/providers-reasoning.test.ts +0 -46
  308. package/src/__tests__/wiki/wiki-review-mode.test.ts +0 -22
  309. package/src/analysis/benchmark.ts +0 -132
  310. package/src/analysis/changed-files.ts +0 -73
  311. package/src/analysis/changed-workspaces.ts +0 -94
  312. package/src/analysis/churn-cache.ts +0 -179
  313. package/src/analysis/churn-trend.ts +0 -57
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  315. package/src/analysis/cluster-quality.ts +0 -142
  316. package/src/analysis/combined.ts +0 -41
  317. package/src/analysis/corpus-health.ts +0 -41
  318. package/src/analysis/coverage-gaps.ts +0 -246
  319. package/src/analysis/dep-classification.ts +0 -167
  320. package/src/analysis/dependency-health.ts +0 -146
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- import { describe, it, expect } from 'vitest';
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- import { detectDeadCode, detectDeadCodeNodes, formatDeadCode } from '../../graph/dead-code.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-deadcode-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertFileNode(db: Database.Database, filePath: string) {
15
- const id = filePath.replace(/[/.]/g, '_') + '_file';
16
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, file_path, is_exported) VALUES (?, 'File', ?, ?, ?, 0)`)
17
- .run(id, filePath.split('/').pop(), filePath.split('/').pop(), filePath);
18
- return id;
19
- }
20
-
21
- function insertFunction(db: Database.Database, name: string, filePath: string, opts?: { exported?: boolean; startLine?: number }) {
22
- const id = filePath.replace(/[/.]/g, '_') + '_' + name + '_function';
23
- const fileId = filePath.replace(/[/.]/g, '_') + '_file';
24
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, file_path, start_line, is_exported) VALUES (?, 'Function', ?, ?, ?, ?, ?)`)
25
- .run(id, name, name.toLowerCase(), filePath, opts?.startLine ?? 1, opts?.exported ? 1 : 0);
26
- // CONTAINS edge from File → Function
27
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CONTAINS', 'EXTRACTED', 1.0)`)
28
- .run(`${fileId}_${id}_contains`, fileId, id);
29
- return id;
30
- }
31
-
32
- function insertCallEdge(db: Database.Database, src: string, tgt: string) {
33
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
34
- .run(`${src}_${tgt}_calls`, src, tgt);
35
- }
36
-
37
- function insertReExportEdge(db: Database.Database, srcFileId: string, tgtFileId: string) {
38
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'RE_EXPORTS', 'INFERRED', 0.8)`)
39
- .run(`${srcFileId}_${tgtFileId}_reexports`, srcFileId, tgtFileId);
40
- }
41
-
42
- describe('detectDeadCode', () => {
43
- it('returns empty array for empty graph', () => {
44
- const db = makeTempDb();
45
- expect(detectDeadCode(db)).toEqual([]);
46
- db.close();
47
- });
48
-
49
- it('does NOT flag non-exported functions', () => {
50
- const db = makeTempDb();
51
- insertFileNode(db, 'src/utils.ts');
52
- insertFunction(db, 'helper', 'src/utils.ts', { exported: false });
53
- expect(detectDeadCode(db)).toEqual([]);
54
- db.close();
55
- });
56
-
57
- it('flags exported function with no inbound edges', () => {
58
- const db = makeTempDb();
59
- insertFileNode(db, 'src/utils.ts');
60
- const id = insertFunction(db, 'unused', 'src/utils.ts', { exported: true });
61
- expect(detectDeadCode(db)).toContain(id);
62
- db.close();
63
- });
64
-
65
- it('does NOT flag functions with CALLS edges', () => {
66
- const db = makeTempDb();
67
- insertFileNode(db, 'src/a.ts');
68
- insertFileNode(db, 'src/b.ts');
69
- const callerId = insertFunction(db, 'caller', 'src/a.ts', { exported: true });
70
- const calleeId = insertFunction(db, 'callee', 'src/b.ts', { exported: true });
71
- insertCallEdge(db, callerId, calleeId);
72
- const result = detectDeadCode(db);
73
- expect(result).not.toContain(calleeId);
74
- db.close();
75
- });
76
-
77
- it('skips test files', () => {
78
- const db = makeTempDb();
79
- insertFileNode(db, 'src/__tests__/foo.test.ts');
80
- insertFunction(db, 'testHelper', 'src/__tests__/foo.test.ts', { exported: true });
81
- expect(detectDeadCode(db)).toEqual([]);
82
- db.close();
83
- });
84
-
85
- it('skips dist files', () => {
86
- const db = makeTempDb();
87
- insertFileNode(db, 'packages/foo/dist/utils.ts');
88
- insertFunction(db, 'built', 'packages/foo/dist/utils.ts', { exported: true });
89
- expect(detectDeadCode(db)).toEqual([]);
90
- db.close();
91
- });
92
-
93
- it('skips index files', () => {
94
- const db = makeTempDb();
95
- insertFileNode(db, 'src/index.ts');
96
- insertFunction(db, 'main', 'src/index.ts', { exported: true });
97
- expect(detectDeadCode(db)).toEqual([]);
98
- db.close();
99
- });
100
-
101
- it('does NOT suppress on a same-name coincidence alone (no real edge)', () => {
102
- // Regression test for P2-18(a): the old suppression matched on NAME EQUALITY
103
- // anywhere in the codebase, so a genuinely-dead `shared()` in a.ts was hidden
104
- // just because an unrelated `shared` also existed in b.ts. With no actual
105
- // RE_EXPORTS/IMPORTS edge between them, the candidate must still be flagged.
106
- const db = makeTempDb();
107
- insertFileNode(db, 'src/a.ts');
108
- insertFileNode(db, 'src/b.ts');
109
- const id = insertFunction(db, 'shared', 'src/a.ts', { exported: true });
110
- insertFunction(db, 'shared', 'src/b.ts', { exported: false });
111
- expect(detectDeadCode(db)).toContain(id);
112
- db.close();
113
- });
114
-
115
- it('does NOT suppress on same-name-in-index.ts alone (no real RE_EXPORTS edge)', () => {
116
- // Regression test for P2-18(a): a function sharing a name with something
117
- // index.ts happens to also define is not the same as being re-exported by it.
118
- const db = makeTempDb();
119
- insertFileNode(db, 'src/utils.ts');
120
- insertFileNode(db, 'src/index.ts');
121
- const id = insertFunction(db, 'helper', 'src/utils.ts', { exported: true });
122
- insertFunction(db, 'helper', 'src/index.ts', { exported: true });
123
- expect(detectDeadCode(db)).toContain(id);
124
- db.close();
125
- });
126
-
127
- it('skips functions re-exported through a REAL RE_EXPORTS edge from a barrel', () => {
128
- const db = makeTempDb();
129
- const utilsFileId = insertFileNode(db, 'src/utils.ts');
130
- const indexFileId = insertFileNode(db, 'src/index.ts');
131
- insertFunction(db, 'helper', 'src/utils.ts', { exported: true });
132
- // Actual barrel edge: src/index.ts RE_EXPORTS src/utils.ts's File node.
133
- insertReExportEdge(db, indexFileId, utilsFileId);
134
- expect(detectDeadCode(db)).toEqual([]);
135
- db.close();
136
- });
137
- });
138
-
139
- describe('detectDeadCodeNodes', () => {
140
- it('returns structured nodes with file path and line', () => {
141
- const db = makeTempDb();
142
- insertFileNode(db, 'src/utils.ts');
143
- insertFunction(db, 'unused', 'src/utils.ts', { exported: true, startLine: 42 });
144
- const nodes = detectDeadCodeNodes(db);
145
- expect(nodes).toHaveLength(1);
146
- expect(nodes[0]).toMatchObject({
147
- name: 'unused',
148
- filePath: 'src/utils.ts',
149
- startLine: 42,
150
- label: 'Function',
151
- });
152
- db.close();
153
- });
154
- });
155
-
156
- describe('formatDeadCode', () => {
157
- it('returns "none detected" for empty list', () => {
158
- expect(formatDeadCode([])).toBe('Dead code: none detected.');
159
- });
160
-
161
- it('includes candidate count and file locations', () => {
162
- const result = formatDeadCode([{
163
- id: 'test_id',
164
- name: 'unused',
165
- filePath: 'src/utils.ts',
166
- startLine: 42,
167
- label: 'Function',
168
- }]);
169
- expect(result).toContain('1 exported function');
170
- expect(result).toContain('src/utils.ts:42');
171
- expect(result).toContain('Candidates only');
172
- expect(result).not.toContain('lacks cross-file');
173
- });
174
- });
@@ -1,62 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { dfsTraversal } from '../../graph/dfs.js';
3
-
4
- function makeGraph(): Map<string, string[]> {
5
- const adj = new Map<string, string[]>();
6
- adj.set('a', ['b', 'c']);
7
- adj.set('b', ['d']);
8
- adj.set('c', ['d', 'e']);
9
- adj.set('d', []);
10
- adj.set('e', []);
11
- return adj;
12
- }
13
-
14
- describe('dfsTraversal', () => {
15
- it('visits all reachable nodes', () => {
16
- const visited: string[] = [];
17
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); });
18
- expect(visited.sort()).toEqual(['a', 'b', 'c', 'd', 'e'].sort());
19
- });
20
-
21
- it('respects depth limit', () => {
22
- const visited: string[] = [];
23
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); }, { maxDepth: 1 });
24
- expect(visited).toContain('a');
25
- expect(visited).toContain('b');
26
- expect(visited).toContain('c');
27
- expect(visited).not.toContain('d');
28
- expect(visited).not.toContain('e');
29
- });
30
-
31
- it('provides depth info in visitor', () => {
32
- const depths: Record<string, number> = {};
33
- dfsTraversal('a', makeGraph(), (node) => { depths[node.id] = node.depth; });
34
- expect(depths['a']).toBe(0);
35
- expect(depths['b']).toBe(1);
36
- expect(depths['d']).toBe(2);
37
- });
38
-
39
- it('does not revisit nodes (cycle safety)', () => {
40
- const cyclic = new Map<string, string[]>();
41
- cyclic.set('a', ['b']);
42
- cyclic.set('b', ['c']);
43
- cyclic.set('c', ['a']); // cycle
44
- const visited: string[] = [];
45
- dfsTraversal('a', cyclic, (node) => { visited.push(node.id); });
46
- expect(visited.length).toBe(3);
47
- expect(new Set(visited).size).toBe(3);
48
- });
49
-
50
- it('returns empty when start node not in graph', () => {
51
- const visited: string[] = [];
52
- dfsTraversal('z', makeGraph(), (node) => { visited.push(node.id); });
53
- expect(visited).toEqual([]);
54
- });
55
-
56
- it('returns nodes in DFS pre-order', () => {
57
- const visited: string[] = [];
58
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); });
59
- expect(visited.indexOf('a')).toBeLessThan(visited.indexOf('b'));
60
- expect(visited.indexOf('b')).toBeLessThan(visited.indexOf('d'));
61
- });
62
- });
@@ -1,83 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { diffSnapshots, type GraphSnapshot } from '../../graph/diff.js';
3
- import type { MonographNode, MonographEdge } from '../../types.js';
4
-
5
- function node(id: string): MonographNode {
6
- return {
7
- id,
8
- label: 'function',
9
- name: id,
10
- normLabel: id,
11
- filePath: `${id}.ts`,
12
- startLine: 1,
13
- endLine: 10,
14
- communityId: 0,
15
- isExported: false,
16
- language: 'typescript',
17
- properties: {},
18
- } as MonographNode;
19
- }
20
-
21
- function edge(sourceId: string, targetId: string): MonographEdge {
22
- return { id: `${sourceId}->${targetId}`, sourceId, targetId, relation: 'imports' } as MonographEdge;
23
- }
24
-
25
- describe('GraphDiff.summary', () => {
26
- it('includes summary string in diff result', () => {
27
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
28
- const after: GraphSnapshot = { nodes: [node('a'), node('b'), node('c')], edges: [edge('a', 'c')], capturedAt: '' };
29
- const diff = diffSnapshots(before, after);
30
- expect(typeof diff.summary).toBe('string');
31
- });
32
-
33
- it('reports new nodes in summary', () => {
34
- const before: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
35
- const after: GraphSnapshot = { nodes: [node('a'), node('b'), node('c')], edges: [], capturedAt: '' };
36
- const diff = diffSnapshots(before, after);
37
- expect(diff.summary).toMatch(/2 new node/);
38
- });
39
-
40
- it('reports removed nodes in summary', () => {
41
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
42
- const after: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
43
- const diff = diffSnapshots(before, after);
44
- expect(diff.summary).toMatch(/1 node removed/);
45
- });
46
-
47
- it('reports new edges in summary', () => {
48
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
49
- const after: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [edge('a', 'b')], capturedAt: '' };
50
- const diff = diffSnapshots(before, after);
51
- expect(diff.summary).toMatch(/1 new edge/);
52
- });
53
-
54
- it('reports removed edges in summary', () => {
55
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [edge('a', 'b')], capturedAt: '' };
56
- const after: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
57
- const diff = diffSnapshots(before, after);
58
- expect(diff.summary).toMatch(/1 edge removed/);
59
- });
60
-
61
- it('returns "no changes" when graph is unchanged', () => {
62
- const snap: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
63
- const diff = diffSnapshots(snap, snap);
64
- expect(diff.summary).toMatch(/no changes/i);
65
- });
66
-
67
- it('combines multiple changes in one summary', () => {
68
- const before: GraphSnapshot = {
69
- nodes: [node('a'), node('b')],
70
- edges: [edge('a', 'b')],
71
- capturedAt: '',
72
- };
73
- const after: GraphSnapshot = {
74
- nodes: [node('a'), node('c')],
75
- edges: [edge('a', 'c')],
76
- capturedAt: '',
77
- };
78
- const diff = diffSnapshots(before, after);
79
- // Should mention new node, removed node, new edge, removed edge
80
- expect(diff.summary.length).toBeGreaterThan(5);
81
- expect(typeof diff.summary).toBe('string');
82
- });
83
- });
@@ -1,129 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { filterEdges, filterEdgesInMemory } from '../../graph/edge-filter.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- import type { MonographEdge } from '../../types.js';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-edge-filter-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: ReturnType<typeof openDb>, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(
20
- db: ReturnType<typeof openDb>,
21
- id: string,
22
- src: string,
23
- tgt: string,
24
- relation = 'CALLS',
25
- confidence = 'EXTRACTED',
26
- score = 1.0,
27
- ) {
28
- db.prepare(
29
- `INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score)
30
- VALUES (?, ?, ?, ?, ?, ?)`,
31
- ).run(id, src, tgt, relation, confidence, score);
32
- }
33
-
34
- describe('filterEdges (DB-backed)', () => {
35
- it('returns all edges when no filter options are given', () => {
36
- const db = makeTempDb();
37
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
38
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
39
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'INFERRED', 0.5);
40
- const result = filterEdges(db);
41
- expect(result).toHaveLength(2);
42
- db.close();
43
- });
44
-
45
- it('filters by relation type', () => {
46
- const db = makeTempDb();
47
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
48
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
49
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'EXTRACTED', 1.0);
50
- const result = filterEdges(db, { relations: ['CALLS'] });
51
- expect(result).toHaveLength(1);
52
- expect(result[0].relation).toBe('CALLS');
53
- db.close();
54
- });
55
-
56
- it('filters by confidence label', () => {
57
- const db = makeTempDb();
58
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
59
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
60
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'INFERRED', 0.5);
61
- const result = filterEdges(db, { confidences: ['INFERRED'] });
62
- expect(result).toHaveLength(1);
63
- expect(result[0].confidence).toBe('INFERRED');
64
- db.close();
65
- });
66
-
67
- it('filters by minConfidenceScore', () => {
68
- const db = makeTempDb();
69
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
70
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 0.9);
71
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'INFERRED', 0.3);
72
- const result = filterEdges(db, { minConfidenceScore: 0.8 });
73
- expect(result).toHaveLength(1);
74
- expect(result[0].id).toBe('e1');
75
- db.close();
76
- });
77
-
78
- it('filters by maxConfidenceScore', () => {
79
- const db = makeTempDb();
80
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
81
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 0.9);
82
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'AMBIGUOUS', 0.2);
83
- const result = filterEdges(db, { maxConfidenceScore: 0.5 });
84
- expect(result).toHaveLength(1);
85
- expect(result[0].id).toBe('e2');
86
- db.close();
87
- });
88
-
89
- it('combines relation and confidence filters (AND)', () => {
90
- const db = makeTempDb();
91
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
92
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
93
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'INFERRED', 0.5);
94
- insertEdge(db, 'e3', 'a', 'c', 'CALLS', 'INFERRED', 0.5);
95
- const result = filterEdges(db, { relations: ['CALLS'], confidences: ['INFERRED'] });
96
- expect(result).toHaveLength(1);
97
- expect(result[0].id).toBe('e3');
98
- db.close();
99
- });
100
- });
101
-
102
- describe('filterEdgesInMemory', () => {
103
- const edges: MonographEdge[] = [
104
- { id: 'e1', sourceId: 'a', targetId: 'b', relation: 'CALLS', confidence: 'EXTRACTED', confidenceScore: 1.0 },
105
- { id: 'e2', sourceId: 'b', targetId: 'c', relation: 'IMPORTS', confidence: 'INFERRED', confidenceScore: 0.5 },
106
- { id: 'e3', sourceId: 'c', targetId: 'a', relation: 'CALLS', confidence: 'AMBIGUOUS', confidenceScore: 0.2 },
107
- ];
108
-
109
- it('returns all edges with no options', () => {
110
- expect(filterEdgesInMemory(edges)).toHaveLength(3);
111
- });
112
-
113
- it('filters by relation', () => {
114
- const result = filterEdgesInMemory(edges, { relations: ['CALLS'] });
115
- expect(result).toHaveLength(2);
116
- });
117
-
118
- it('filters by confidence', () => {
119
- const result = filterEdgesInMemory(edges, { confidences: ['EXTRACTED'] });
120
- expect(result).toHaveLength(1);
121
- expect(result[0].id).toBe('e1');
122
- });
123
-
124
- it('filters by minConfidenceScore and maxConfidenceScore', () => {
125
- const result = filterEdgesInMemory(edges, { minConfidenceScore: 0.3, maxConfidenceScore: 0.8 });
126
- expect(result).toHaveLength(1);
127
- expect(result[0].id).toBe('e2');
128
- });
129
- });
@@ -1,111 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { traceImportChain } from '../../graph/import-chain.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-import-chain-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: Database.Database, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'File', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(db: Database.Database, src: string, tgt: string) {
20
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'IMPORTS', 'EXTRACTED', 1.0)`)
21
- .run(`${src}_${tgt}`, src, tgt);
22
- }
23
-
24
- describe('traceImportChain', () => {
25
- it('returns empty array when source does not exist', () => {
26
- const db = makeTempDb();
27
- const result = traceImportChain(db, 'nonexistent', 'also-nonexistent');
28
- expect(result).toEqual([]);
29
- db.close();
30
- });
31
-
32
- it('returns empty array when no path exists', () => {
33
- const db = makeTempDb();
34
- insertNode(db, 'a');
35
- insertNode(db, 'b');
36
- // no edge between them
37
- const result = traceImportChain(db, 'a', 'b');
38
- expect(result).toEqual([]);
39
- db.close();
40
- });
41
-
42
- it('returns direct path when directly connected', () => {
43
- const db = makeTempDb();
44
- insertNode(db, 'a');
45
- insertNode(db, 'b');
46
- insertEdge(db, 'a', 'b');
47
- const result = traceImportChain(db, 'a', 'b');
48
- expect(result.length).toBeGreaterThan(0);
49
- expect(result[0]).toEqual(['a', 'b']);
50
- db.close();
51
- });
52
-
53
- it('returns path through intermediate node a->b->c', () => {
54
- const db = makeTempDb();
55
- insertNode(db, 'a');
56
- insertNode(db, 'b');
57
- insertNode(db, 'c');
58
- insertEdge(db, 'a', 'b');
59
- insertEdge(db, 'b', 'c');
60
- const result = traceImportChain(db, 'a', 'c');
61
- expect(result.length).toBeGreaterThan(0);
62
- const hasPath = result.some(p => JSON.stringify(p) === JSON.stringify(['a', 'b', 'c']));
63
- expect(hasPath).toBe(true);
64
- db.close();
65
- });
66
-
67
- it('returns multiple paths when they exist', () => {
68
- const db = makeTempDb();
69
- // a->b->d and a->c->d
70
- insertNode(db, 'a');
71
- insertNode(db, 'b');
72
- insertNode(db, 'c');
73
- insertNode(db, 'd');
74
- insertEdge(db, 'a', 'b');
75
- insertEdge(db, 'a', 'c');
76
- insertEdge(db, 'b', 'd');
77
- insertEdge(db, 'c', 'd');
78
- const result = traceImportChain(db, 'a', 'd');
79
- expect(result.length).toBe(2);
80
- db.close();
81
- });
82
-
83
- it('respects maxDepth option', () => {
84
- const db = makeTempDb();
85
- // a->b->c->d (depth 3 to reach d from a)
86
- ['a', 'b', 'c', 'd'].forEach(n => insertNode(db, n));
87
- insertEdge(db, 'a', 'b');
88
- insertEdge(db, 'b', 'c');
89
- insertEdge(db, 'c', 'd');
90
- // max depth 2 should not find a->b->c->d
91
- const result = traceImportChain(db, 'a', 'd', { maxDepth: 2 });
92
- expect(result).toEqual([]);
93
- db.close();
94
- });
95
-
96
- it('returns paths as arrays of node id strings', () => {
97
- const db = makeTempDb();
98
- insertNode(db, 'x');
99
- insertNode(db, 'y');
100
- insertEdge(db, 'x', 'y');
101
- const result = traceImportChain(db, 'x', 'y');
102
- expect(Array.isArray(result)).toBe(true);
103
- for (const path of result) {
104
- expect(Array.isArray(path)).toBe(true);
105
- for (const node of path) {
106
- expect(typeof node).toBe('string');
107
- }
108
- }
109
- db.close();
110
- });
111
- });