@monoes/monograph 1.2.0 → 1.2.2

package/dist/src/graph/analyzer.js

@@ -1,8 +1,23 @@
 import { bidirectional } from 'graphology-shortest-path';
 import betweennessCentrality from 'graphology-metrics/centrality/betweenness.js';
 import { loadGraphFromDb } from './loader.js';
-export function getShortestPath(db, sourceId, targetId, maxDepth = 6) {
+// ── TTL graph cache ───────────────────────────────────────────────────────────
+// Avoids loading the full graph from the DB multiple times in the same request
+// window (e.g. when getShortestPath and getBetweennessCentrality are called
+// back-to-back on the same DB instance).
+const GRAPH_CACHE_TTL_MS = 30_000;
+const graphCache = new WeakMap();
+function getOrLoadGraph(db) {
+    const cached = graphCache.get(db);
+    if (cached && Date.now() < cached.expiresAt)
+        return cached.graph;
     const graph = loadGraphFromDb(db);
+    graphCache.set(db, { graph, expiresAt: Date.now() + GRAPH_CACHE_TTL_MS });
+    return graph;
+}
+// ─────────────────────────────────────────────────────────────────────────────
+export function getShortestPath(db, sourceId, targetId, maxDepth = 6) {
+    const graph = getOrLoadGraph(db);
     if (!graph.hasNode(sourceId) || !graph.hasNode(targetId))
         return null;
     try {
@@ -24,7 +39,7 @@ export function getShortestPath(db, sourceId, targetId, maxDepth = 6) {
  * structural bridges — refactoring them has wide blast radius.
  */
 export function getBetweennessCentrality(db) {
-    const graph = loadGraphFromDb(db);
+    const graph = getOrLoadGraph(db);
     if (graph.order === 0)
         return new Map();
     const scores = betweennessCentrality(graph, { normalized: true });

package/dist/src/graph/analyzer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyzer.js","sourceRoot":"","sources":["../../../src/graph/analyzer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC;AACzD,OAAO,qBAAqB,MAAM,8CAA8C,CAAC;AAGjF,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAE9C,iFAAiF;AACjF,+EAA+E;AAC/E,4EAA4E;AAC5E,yCAAyC;AAEzC,MAAM,kBAAkB,GAAG,MAAM,CAAC;AAOlC,MAAM,UAAU,GAAG,IAAI,OAAO,EAAuB,CAAC;AAEtD,SAAS,cAAc,CAAC,EAAe;IACrC,MAAM,MAAM,GAAG,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;IAClC,IAAI,MAAM,IAAI,IAAI,CAAC,GAAG,EAAE,GAAG,MAAM,CAAC,SAAS;QAAE,OAAO,MAAM,CAAC,KAAK,CAAC;IACjE,MAAM,KAAK,GAAG,eAAe,CAAC,EAAE,CAAC,CAAC;IAClC,UAAU,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,kBAAkB,EAAE,CAAC,CAAC;IAC1E,OAAO,KAAK,CAAC;AACf,CAAC;AAED,gFAAgF;AAEhF,MAAM,UAAU,eAAe,CAC7B,EAAe,EACf,QAAgB,EAChB,QAAgB,EAChB,QAAQ,GAAG,CAAC;IAEZ,MAAM,KAAK,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC;IACjC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC;QAAE,OAAO,IAAI,CAAC;IACtE,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,aAAa,CAAC,KAAK,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;QACtD,IAAI,IAAI,IAAI,IAAI,CAAC,MAAM,IAAI,QAAQ,GAAG,CAAC;YAAE,OAAO,IAAI,CAAC;QACrD,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,wBAAwB,CAAC,EAAe;IACtD,MAAM,KAAK,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC;IACjC,IAAI,KAAK,CAAC,KAAK,KAAK,CAAC;QAAE,OAAO,IAAI,GAAG,EAAE,CAAC;IACxC,MAAM,MAAM,GAAG,qBAAqB,CAAC,KAAK,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IAClE,OAAO,IAAI,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC;AACzC,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAY,EAAE,MAAc;IACzD,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC;QAAE,OAAO,EAAE,EAAE,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC;IACrD,OAAO;QACL,EAAE,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/C,GAAG,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;KACnD,CAAC;AACJ,CAAC"}

package/dist/src/graph/author-analytics.d.ts

@@ -15,4 +15,6 @@ export interface AuthorAnalyticsReport {
     unownedFiles: number;
 }
 export declare function computeAuthorAnalytics(repoPath: string, db: MonographDb): AuthorAnalyticsReport;
+/** Format AuthorAnalyticsReport as structured text for LLM navigation. */
+export declare function formatAuthorAnalytics(report: AuthorAnalyticsReport): string;
 //# sourceMappingURL=author-analytics.d.ts.map

package/dist/src/graph/author-analytics.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"author-analytics.d.ts","sourceRoot":"","sources":["../../../src/graph/author-analytics.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,MAAM,MAAM,UAAU,GAAG,cAAc,GAAG,QAAQ,GAAG,WAAW,CAAC;AAEjE,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,UAAU,CAAC;IACvB,KAAK,EAAE,OAAO,CAAC;CAChB;AAED,MAAM,WAAW,qBAAqB;IACpC,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,SAAS,EAAE,WAAW,EAAE,CAAC;IACzB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAgBD,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,WAAW,GAAG,qBAAqB,CAmJ/F;AAED,0EAA0E;AAC1E,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,qBAAqB,GAAG,MAAM,CA+B3E"}

package/dist/src/graph/author-analytics.js

@@ -53,16 +53,22 @@ export function computeAuthorAnalytics(repoPath, db) {
     if (commitCount.size === 0)
         return EMPTY_REPORT;
     // ── File ownership ─────────────────────────────────────────────────────────
-    // Get File nodes with degree > 2
+    // Get File nodes with degree > 2 — use JOIN+GROUP BY instead of correlated subquery
     const fileRows = db.prepare(`
     SELECT n.id, n.name, n.file_path
     FROM nodes n
+    JOIN (
+      SELECT id, COUNT(*) AS deg
+      FROM (
+        SELECT source_id AS id FROM edges
+        UNION ALL
+        SELECT target_id AS id FROM edges
+      )
+      GROUP BY id
+      HAVING COUNT(*) > 2
+    ) deg_tbl ON deg_tbl.id = n.id
     WHERE n.label = 'File'
       AND n.file_path IS NOT NULL
-      AND (
-        SELECT COUNT(*) FROM edges e
-        WHERE e.source_id = n.id OR e.target_id = n.id
-      ) > 2
     LIMIT 200
   `).all();
     // Map: file path → winning author email (majority owner) or null
@@ -148,4 +154,32 @@ export function computeAuthorAnalytics(repoPath, db) {
     const topOwners = authors.filter(a => !a.isBot).slice(0, 5);
     return { authors, topOwners, botAuthors, unownedFiles };
 }
+/** Format AuthorAnalyticsReport as structured text for LLM navigation. */
+export function formatAuthorAnalytics(report) {
+    if (report.authors.length === 0) {
+        return 'Author analytics: no commit history found.';
+    }
+    const lines = [
+        `Author analytics: ${report.authors.length} contributor(s), ${report.unownedFiles} unowned file(s).`,
+        '',
+    ];
+    if (report.topOwners.length > 0) {
+        lines.push('Top file owners (non-bot):');
+        for (const a of report.topOwners) {
+            const trend = a.churnTrend === 'accelerating' ? ' [↑ accelerating]'
+                : a.churnTrend === 'declining' ? ' [↓ declining]' : '';
+            lines.push(`  ${a.author}  files:${a.filesOwned}  commits:${a.commitCount}  recent30d:${a.recentCommits}${trend}`);
+        }
+        lines.push('');
+    }
+    if (report.botAuthors.length > 0) {
+        lines.push(`Bot/automation authors (${report.botAuthors.length}): ${report.botAuthors.join(', ')}`);
+        lines.push('');
+    }
+    if (report.unownedFiles > 0) {
+        lines.push(`Unowned files: ${report.unownedFiles} file(s) have no majority author (> 50% commits).`);
+        lines.push('Consider adding CODEOWNERS entries for these files.');
+    }
+    return lines.join('\n').trimEnd();
+}
 //# sourceMappingURL=author-analytics.js.map

package/dist/src/graph/author-analytics.js.map

@@ -1 +1 @@
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package/dist/src/graph/baseline.d.ts

@@ -6,6 +6,7 @@ export interface BaselineFinding {
     nodeId: string;
     nodeName: string;
     filePath: string | null;
+    startLine: number | null;
     savedAt: string;
     /** 16-hex SHA-256 fingerprint for stable deduplication across runs */
     fingerprint?: string;
@@ -77,4 +78,8 @@ export interface BaselineVitals {
  * Each baseline must carry BaselineVitals fields (nodeCount, edgeCount, …).
  */
 export declare function computeTrend(before: BaselineData & BaselineVitals, after: BaselineData & BaselineVitals): TrendReport;
+/** Format a list of ComparedFindings as structured text with file:line hints. */
+export declare function formatComparedFindings(findings: ComparedFinding[], showAll?: boolean): string;
+/** Format a TrendReport as structured text for LLM consumption. */
+export declare function formatTrendReport(report: TrendReport): string;
 //# sourceMappingURL=baseline.d.ts.map

package/dist/src/graph/baseline.d.ts.map

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package/dist/src/graph/baseline.js

@@ -63,7 +63,7 @@ export function extractFindingsFromDb(db, projectPath) {
     const findings = [];
     // Isolated nodes (no incoming or outgoing edges)
     const isolated = db.prepare(`
-    SELECT n.id, n.name, n.file_path, n.label
+    SELECT n.id, n.name, n.file_path, n.start_line, n.label
     FROM nodes n
     WHERE NOT EXISTS (SELECT 1 FROM edges e WHERE e.source_id = n.id OR e.target_id = n.id)
     AND n.label IN ('Function', 'Class', 'Method', 'Interface', 'Variable', 'Module', 'File')
@@ -76,13 +76,14 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: n.id,
             nodeName: n.name,
             filePath: n.file_path,
+            startLine: n.start_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('isolated_node', n.file_path ?? '', n.id),
         });
     }
     // God nodes (degree > 50)
     const gods = db.prepare(`
-    SELECT n.id, n.name, n.file_path,
+    SELECT n.id, n.name, n.file_path, n.start_line,
            COUNT(DISTINCT e1.id) + COUNT(DISTINCT e2.id) as degree
     FROM nodes n
     LEFT JOIN edges e1 ON e1.source_id = n.id
@@ -99,6 +100,7 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: n.id,
             nodeName: n.name,
             filePath: n.file_path,
+            startLine: n.start_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('god_node', n.file_path ?? '', n.id),
         });
@@ -106,7 +108,7 @@ export function extractFindingsFromDb(db, projectPath) {
     // Surprise edges: non-EXTRACTED confidence (cross-community low-confidence edges)
     const surprises = db.prepare(`
     SELECT DISTINCT e.id as edge_id, e.source_id, e.target_id, e.confidence,
-           n.name as src_name, n.file_path as src_file
+           n.name as src_name, n.file_path as src_file, n.start_line as src_line
     FROM edges e
     JOIN nodes n ON n.id = e.source_id
     WHERE e.confidence != 'EXTRACTED'
@@ -119,27 +121,25 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: e.source_id,
             nodeName: e.src_name,
             filePath: e.src_file,
+            startLine: e.src_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('surprise', e.source_id, e.target_id),
         });
     }
     // Bridge nodes: nodes whose edges span more than one community_id
+    // Use JOIN+GROUP BY instead of correlated subqueries to avoid N*2 subquery executions
     const bridges = db.prepare(`
-    SELECT n.id, n.name, n.file_path
+    SELECT n.id, n.name, n.file_path, n.start_line,
+           COUNT(DISTINCT CASE WHEN e_out.source_id = n.id AND n_tgt.community_id != n.community_id THEN n_tgt.community_id END) +
+           COUNT(DISTINCT CASE WHEN e_in.target_id = n.id AND n_src.community_id != n.community_id THEN n_src.community_id END) AS cross_communities
     FROM nodes n
+    LEFT JOIN edges e_out ON e_out.source_id = n.id
+    LEFT JOIN nodes n_tgt ON n_tgt.id = e_out.target_id AND n_tgt.community_id IS NOT NULL
+    LEFT JOIN edges e_in ON e_in.target_id = n.id
+    LEFT JOIN nodes n_src ON n_src.id = e_in.source_id AND n_src.community_id IS NOT NULL
     WHERE n.community_id IS NOT NULL
-    AND (
-      SELECT COUNT(DISTINCT n_tgt.community_id)
-      FROM edges e_out
-      JOIN nodes n_tgt ON n_tgt.id = e_out.target_id
-      WHERE e_out.source_id = n.id AND n_tgt.community_id != n.community_id
-    ) +
-    (
-      SELECT COUNT(DISTINCT n_src.community_id)
-      FROM edges e_in
-      JOIN nodes n_src ON n_src.id = e_in.source_id
-      WHERE e_in.target_id = n.id AND n_src.community_id != n.community_id
-    ) >= 2
+    GROUP BY n.id
+    HAVING cross_communities >= 2
     LIMIT 100
   `).all();
     for (const n of bridges) {
@@ -149,13 +149,14 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: n.id,
             nodeName: n.name,
             filePath: n.file_path,
+            startLine: n.start_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('bridge_node', n.file_path ?? '', n.id),
         });
     }
     // Unreachable exports: exported nodes with no incoming edges
     const unreachableExports = db.prepare(`
-    SELECT n.id, n.name, n.file_path
+    SELECT n.id, n.name, n.file_path, n.start_line
     FROM nodes n
     WHERE n.is_exported = 1
     AND n.label IN ('Function', 'Class', 'Method', 'Interface', 'Variable')
@@ -169,6 +170,7 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: n.id,
             nodeName: n.name,
             filePath: n.file_path,
+            startLine: n.start_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('unreachable_export', n.file_path ?? '', n.id),
         });
@@ -176,7 +178,7 @@ export function extractFindingsFromDb(db, projectPath) {
     // Ambiguous edges: edges with AMBIGUOUS confidence
     const ambiguousEdges = db.prepare(`
     SELECT DISTINCT e.id as edge_id, e.source_id, e.target_id,
-           n.name as src_name, n.file_path as src_file
+           n.name as src_name, n.file_path as src_file, n.start_line as src_line
     FROM edges e
     JOIN nodes n ON n.id = e.source_id
     WHERE e.confidence = 'AMBIGUOUS'
@@ -189,6 +191,7 @@ export function extractFindingsFromDb(db, projectPath) {
             nodeId: e.source_id,
             nodeName: e.src_name,
             filePath: e.src_file,
+            startLine: e.src_line ?? null,
             savedAt: new Date().toISOString(),
             fingerprint: fingerprintFinding('ambiguous_edge', e.source_id, e.target_id),
         });
@@ -269,4 +272,48 @@ export function computeTrend(before, after) {
     }
     return { metrics, overallDirection };
 }
+/** Format a list of ComparedFindings as structured text with file:line hints. */
+export function formatComparedFindings(findings, showAll = false) {
+    if (findings.length === 0)
+        return 'Baseline comparison: no findings.';
+    const newFindings = findings.filter(f => f.introduced);
+    const existing = findings.filter(f => !f.introduced);
+    const lines = [
+        `Baseline comparison: ${findings.length} total finding(s) — ${newFindings.length} new, ${existing.length} known.`,
+        '',
+    ];
+    if (newFindings.length > 0) {
+        lines.push(`New findings (${newFindings.length}):`);
+        for (const f of newFindings) {
+            const ref = f.filePath
+                ? f.startLine != null ? `${f.filePath}:${f.startLine}` : f.filePath
+                : f.nodeId;
+            lines.push(`  [${f.type}]  ${f.nodeName}  ${ref}`);
+        }
+        lines.push('');
+    }
+    if (showAll && existing.length > 0) {
+        lines.push(`Known findings (${existing.length}):`);
+        for (const f of existing) {
+            const ref = f.filePath
+                ? f.startLine != null ? `${f.filePath}:${f.startLine}` : f.filePath
+                : f.nodeId;
+            lines.push(`  [${f.type}]  ${f.nodeName}  ${ref}`);
+        }
+        lines.push('');
+    }
+    return lines.join('\n').trimEnd();
+}
+/** Format a TrendReport as structured text for LLM consumption. */
+export function formatTrendReport(report) {
+    const lines = [
+        `Graph trend: ${report.overallDirection}`,
+        '',
+    ];
+    for (const m of report.metrics) {
+        const deltaStr = m.delta > 0 ? `+${m.delta}` : `${m.delta}`;
+        lines.push(`  ${m.symbol} ${m.metric}: ${m.previous} → ${m.current} (${deltaStr})  [${m.direction}]`);
+    }
+    return lines.join('\n');
+}
 //# sourceMappingURL=baseline.js.map

package/dist/src/graph/baseline.js.map

@@ -1 +1 @@
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package/dist/src/graph/clone-detector.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"clone-detector.d.ts","sourceRoot":"","sources":["../../../src/graph/clone-detector.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAIpD,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,OAAO,GAAG,SAAS,GAAG,YAAY,CAAC;IAC9C,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAkDD,wBAAgB,YAAY,CAC1B,EAAE,EAAE,WAAW,EACf,aAAa,SAAM,EACnB,SAAS,SAAI,GACZ,oBAAoB,CA0GtB"}
+{"version":3,"file":"clone-detector.d.ts","sourceRoot":"","sources":["../../../src/graph/clone-detector.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAIpD,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,OAAO,GAAG,SAAS,GAAG,YAAY,CAAC;IAC9C,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAwCD,wBAAgB,YAAY,CAC1B,EAAE,EAAE,WAAW,EACf,aAAa,SAAM,EACnB,SAAS,SAAI,GACZ,oBAAoB,CAsGtB"}

package/dist/src/graph/clone-detector.js

@@ -11,38 +11,28 @@ function tokenizePath(filePath) {
 function baseName(filePath) {
     return filePath.replace(/^.*[\\/]/, '');
 }
-/** Compute Jaccard similarity between two multisets (represented as token arrays). */
-function jaccardSimilarity(a, b) {
+/**
+ * Compute both Jaccard similarity and shared token count in a single pass.
+ * Avoids building the countA Map twice (previously done separately in
+ * jaccardSimilarity and sharedTokenCount).
+ */
+function computeSimilarityAndShared(a, b) {
     const countA = new Map();
-    const countB = new Map();
     for (const t of a)
         countA.set(t, (countA.get(t) ?? 0) + 1);
-    for (const t of b)
-        countB.set(t, (countB.get(t) ?? 0) + 1);
     let intersection = 0;
-    for (const [token, ca] of countA) {
-        const cb = countB.get(token) ?? 0;
-        intersection += Math.min(ca, cb);
-    }
-    const union = a.length + b.length - intersection;
-    return union === 0 ? 1 : intersection / union;
-}
-/** Count tokens shared between two multisets. */
-function sharedTokenCount(a, b) {
-    const countA = new Map();
-    for (const t of a)
-        countA.set(t, (countA.get(t) ?? 0) + 1);
-    let shared = 0;
     const seen = new Map();
     for (const t of b) {
         const limit = countA.get(t) ?? 0;
         const used = seen.get(t) ?? 0;
         if (used < limit) {
-            shared++;
+            intersection++;
             seen.set(t, used + 1);
         }
     }
-    return shared;
+    const union = a.length + b.length - intersection;
+    const similarity = union === 0 ? 1 : intersection / union;
+    return { similarity, shared: intersection };
 }
 export function detectClones(db, minSimilarity = 0.8, minTokens = 2) {
     // Query all File nodes with file_path
@@ -52,29 +42,25 @@ export function detectClones(db, minSimilarity = 0.8, minTokens = 2) {
     const totalFiles = rows.length;
     const pairs = [];
     const involvedFiles = new Set();
-    // Pre-compute tokens for each file
+    // Pre-compute path tokens and name tokens for each file
     const tokenMap = new Map();
     for (const row of rows) {
-        tokenMap.set(row.file_path, tokenizePath(row.file_path));
+        const pathTokens = tokenizePath(row.file_path);
+        const nameTokens = tokenizePath(baseName(row.file_path));
+        tokenMap.set(row.file_path, { pathTokens, nameTokens });
     }
     // Compare all pairs
     for (let i = 0; i < rows.length; i++) {
         for (let j = i + 1; j < rows.length; j++) {
             const pathA = rows[i].file_path;
             const pathB = rows[j].file_path;
-            const tokensA = tokenMap.get(pathA);
-            const tokensB = tokenMap.get(pathB);
-            const sim = jaccardSimilarity(tokensA, tokensB);
-            const shared = sharedTokenCount(tokensA, tokensB);
+            const entryA = tokenMap.get(pathA);
+            const entryB = tokenMap.get(pathB);
+            const { similarity: sim, shared } = computeSimilarityAndShared(entryA.pathTokens, entryB.pathTokens);
             if (sim < minSimilarity || shared < minTokens) {
                 // Also check near-duplicate file names (same name, different dir)
-                const nameA = baseName(pathA);
-                const nameB = baseName(pathB);
-                const nameTokensA = tokenizePath(nameA);
-                const nameTokensB = tokenizePath(nameB);
-                const nameSim = jaccardSimilarity(nameTokensA, nameTokensB);
-                const nameShared = sharedTokenCount(nameTokensA, nameTokensB);
-                if (nameSim >= minSimilarity && nameShared >= Math.min(minTokens, nameTokensA.length)) {
+                const { similarity: nameSim, shared: nameShared } = computeSimilarityAndShared(entryA.nameTokens, entryB.nameTokens);
+                if (nameSim >= minSimilarity && nameShared >= Math.min(minTokens, entryA.nameTokens.length)) {
                     // Same-name files in different directories → structural similarity
                     const pair = {
                         fileA: pathA,

package/dist/src/graph/clone-detector.js.map

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package/dist/src/graph/clone-families.d.ts

@@ -24,6 +24,8 @@ export interface CloneFamily {
     suggestions: RefactoringSuggestion[];
 }
 export declare function groupIntoFamilies(groups: CloneGroup[]): CloneFamily[];
+/** Format clone families as structured text for LLM consumption. */
+export declare function formatCloneFamilies(families: CloneFamily[]): string;
 export declare function cloneFamilySummary(families: CloneFamily[]): {
     totalFamilies: number;
     totalDuplicatedLines: number;

package/dist/src/graph/clone-families.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"clone-families.d.ts","sourceRoot":"","sources":["../../../src/graph/clone-families.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,eAAe,GAAG,iBAAiB,GAAG,eAAe,GAAG,kBAAkB,CAAC;AAEvF,eAAO,MAAM,iCAAiC,KAAK,CAAC;AAEpD,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,eAAe,CAAC;IACtB,WAAW,EAAE,MAAM,CAAC;IACpB,cAAc,EAAE,MAAM,CAAC;IACvB,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,aAAa;IAC5B,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,UAAU;IACzB,EAAE,EAAE,MAAM,CAAC;IACX,SAAS,EAAE,aAAa,EAAE,CAAC;IAC3B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,MAAM,EAAE,UAAU,EAAE,CAAC;IACrB,oBAAoB,EAAE,MAAM,CAAC;IAC7B,WAAW,EAAE,qBAAqB,EAAE,CAAC;CACtC;AA+CD,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,UAAU,EAAE,GAAG,WAAW,EAAE,CAsBrE;AAED,oEAAoE;AACpE,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,WAAW,EAAE,GAAG,MAAM,CAUnE;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,WAAW,EAAE,GAAG;IAC3D,aAAa,EAAE,MAAM,CAAC;IACtB,oBAAoB,EAAE,MAAM,CAAC;IAC7B,MAAM,EAAE,MAAM,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;CACzC,CAcA"}

package/dist/src/graph/clone-families.js

@@ -1,6 +1,7 @@
 export const MODULE_EXTRACTION_THRESHOLD_LINES = 50;
 function fileSetKey(files) {
-    return [...files].sort().join('|');
+    // Avoid spread allocation: sort a copy directly
+    return files.slice().sort().join('|');
 }
 function generateSuggestions(family) {
     const suggestions = [];
@@ -15,10 +16,14 @@ function generateSuggestions(family) {
     }
     else {
         // Check if all files are in the same directory → MergeDirectories
-        const dirs = [...new Set(family.files.map(f => {
-                const parts = f.replace(/\\/g, '/').split('/');
-                return parts.slice(0, -1).join('/');
-            }))];
+        // Use Set directly to avoid spread+map intermediate array
+        const dirSet = new Set();
+        for (const f of family.files) {
+            const slash = f.replace(/\\/g, '/');
+            const lastSlash = slash.lastIndexOf('/');
+            dirSet.add(lastSlash >= 0 ? slash.slice(0, lastSlash) : '.');
+        }
+        const dirs = [...dirSet];
         if (dirs.length > 1 && family.files.length >= 3) {
             suggestions.push({
                 kind: 'MergeDirectories',
@@ -48,24 +53,47 @@ export function groupIntoFamilies(groups) {
         }
         familyMap.get(key).groups.push(group);
     }
-    return [...familyMap.values()].map(({ files, groups }) => {
+    // Build output array without intermediate spread + map allocation
+    const result = [];
+    for (const { files, groups } of familyMap.values()) {
         const fileList = [...files].sort();
-        const totalDuplicatedLines = groups.reduce((s, g) => s + g.duplicatedLines, 0);
+        let totalDuplicatedLines = 0;
+        for (const g of groups)
+            totalDuplicatedLines += g.duplicatedLines;
         const base = { files: fileList, groups, totalDuplicatedLines };
-        return { ...base, suggestions: generateSuggestions(base) };
-    }).sort((a, b) => b.totalDuplicatedLines - a.totalDuplicatedLines);
+        result.push({ ...base, suggestions: generateSuggestions(base) });
+    }
+    return result.sort((a, b) => b.totalDuplicatedLines - a.totalDuplicatedLines);
+}
+/** Format clone families as structured text for LLM consumption. */
+export function formatCloneFamilies(families) {
+    if (families.length === 0)
+        return 'No clone families detected.';
+    const lines = [`Clone Families (${families.length} total):`];
+    for (const f of families.slice(0, 20)) {
+        lines.push(`\n  ${f.totalDuplicatedLines} duplicated lines across ${f.files.length} files:`);
+        for (const file of f.files)
+            lines.push(`    ${file}`);
+        for (const s of f.suggestions)
+            lines.push(`  -> [${s.kind}] ${s.description}`);
+    }
+    if (families.length > 20)
+        lines.push(`\n  ... and ${families.length - 20} more families`);
+    return lines.join('\n');
 }
 export function cloneFamilySummary(families) {
     const byKind = {
         ExtractFunction: 0, ExtractModule: 0, MergeDirectories: 0,
     };
+    let totalDuplicatedLines = 0;
     for (const f of families) {
+        totalDuplicatedLines += f.totalDuplicatedLines;
         for (const s of f.suggestions)
             byKind[s.kind]++;
     }
     return {
         totalFamilies: families.length,
-        totalDuplicatedLines: families.reduce((s, f) => s + f.totalDuplicatedLines, 0),
+        totalDuplicatedLines,
         byKind,
     };
 }