@monoes/monograph 1.2.0 → 1.2.1

package/dist/src/graph/codeowners-extended.js

@@ -40,4 +40,46 @@ export function ownerLabel(co, relativePath) {
     }
     return owners[0];
 }
+/**
+ * Aggregate ownership across a list of relative paths in a single pass.
+ * Each file is attributed to its primary owner (first in the owners list).
+ */
+export function aggregateOwnership(co, relativePaths) {
+    const unowned = [];
+    const byOwner = new Map();
+    for (const path of relativePaths) {
+        const owners = co.ownersOf(path);
+        if (!owners || owners.length === 0) {
+            unowned.push(path);
+        }
+        else {
+            const primary = owners[0];
+            let bucket = byOwner.get(primary);
+            if (!bucket) {
+                bucket = [];
+                byOwner.set(primary, bucket);
+            }
+            bucket.push(path);
+        }
+    }
+    return { unowned, byOwner, totalFiles: relativePaths.length };
+}
+/**
+ * Format an OwnershipAggregate as structured text for LLM consumption.
+ */
+export function formatOwnershipReport(agg) {
+    const lines = [
+        `Ownership report: ${agg.totalFiles} files, ${agg.byOwner.size} owner(s), ${agg.unowned.length} unowned`,
+        '',
+    ];
+    // Sort owners by file count descending
+    const sorted = Array.from(agg.byOwner.entries()).sort((a, b) => b[1].length - a[1].length);
+    for (const [owner, files] of sorted) {
+        lines.push(`  ${owner}: ${files.length} file(s)`);
+    }
+    if (agg.unowned.length > 0) {
+        lines.push(`  ${UNOWNED_LABEL}: ${agg.unowned.length} file(s)`);
+    }
+    return lines.join('\n');
+}
 //# sourceMappingURL=codeowners-extended.js.map

package/dist/src/graph/codeowners-extended.js.map

@@ -1 +1 @@
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+{"version":3,"file":"codeowners-extended.js","sourceRoot":"","sources":["../../../src/graph/codeowners-extended.ts"],"names":[],"mappings":"AAoBA,MAAM,CAAC,MAAM,aAAa,GAAG,WAAW,CAAC;AACzC,MAAM,CAAC,MAAM,gBAAgB,GAAG,cAAc,CAAC;AAE/C,MAAM,UAAU,YAAY,CAAC,EAAkB,EAAE,YAAoB;IACnE,IAAI,EAAE,CAAC,cAAc,EAAE,CAAC;QACtB,MAAM,KAAK,GAAG,EAAE,CAAC,cAAc,CAAC,YAAY,CAAC,CAAC;QAC9C,IAAI,CAAC,KAAK;YAAE,OAAO,IAAI,CAAC;QACxB,OAAO,KAAK,CAAC,UAAU,CAAC;IAC1B,CAAC;IACD,MAAM,MAAM,GAAG,EAAE,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;IACzC,IAAI,MAAM,KAAK,IAAI;QAAE,OAAO,IAAI,CAAC;IACjC,OAAO,MAAM,CAAC,MAAM,CAAC;AACvB,CAAC;AAED,MAAM,UAAU,SAAS,CAAC,EAAkB,EAAE,YAAoB;IAChE,IAAI,CAAC,EAAE,CAAC,kBAAkB;QAAE,OAAO,SAAS,CAAC;IAC7C,MAAM,KAAK,GAAG,EAAE,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAC;IAClD,IAAI,CAAC,KAAK;QAAE,OAAO,SAAS,CAAC;IAC7B,OAAO,KAAK,CAAC,WAAW,CAAC;AAC3B,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,EAAkB,EAAE,YAAoB;IACzE,IAAI,CAAC,EAAE,CAAC,kBAAkB;QAAE,OAAO,IAAI,CAAC;IACxC,OAAO,EAAE,CAAC,kBAAkB,CAAC,YAAY,CAAC,IAAI,IAAI,CAAC;AACrD,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,EAAkB;IAClD,OAAO,EAAE,CAAC,WAAW,IAAI,KAAK,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,EAAkB,EAAE,YAAoB;IACjE,MAAM,MAAM,GAAG,EAAE,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;IACzC,IAAI,MAAM,KAAK,IAAI;QAAE,OAAO,aAAa,CAAC;IAC1C,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,MAAM,OAAO,GAAG,SAAS,CAAC,EAAE,EAAE,YAAY,CAAC,CAAC;QAC5C,IAAI,OAAO,KAAK,IAAI;YAAE,OAAO,gBAAgB,CAAC;QAC9C,OAAO,aAAa,CAAC;IACvB,CAAC;IACD,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC;AACnB,CAAC;AAWD;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAChC,EAAkB,EAClB,aAAuB;IAEvB,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,MAAM,OAAO,GAAG,IAAI,GAAG,EAAoB,CAAC;IAE5C,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,MAAM,MAAM,GAAG,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QACjC,IAAI,CAAC,MAAM,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACnC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACrB,CAAC;aAAM,CAAC;YACN,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;YAC1B,IAAI,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAClC,IAAI,CAAC,MAAM,EAAE,CAAC;gBAAC,MAAM,GAAG,EAAE,CAAC;gBAAC,OAAO,CAAC,GAAG,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;YAAC,CAAC;YAC3D,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACpB,CAAC;IACH,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,aAAa,CAAC,MAAM,EAAE,CAAC;AAChE,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,qBAAqB,CAAC,GAAuB;IAC3D,MAAM,KAAK,GAAa;QACtB,qBAAqB,GAAG,CAAC,UAAU,WAAW,GAAG,CAAC,OAAO,CAAC,IAAI,cAAc,GAAG,CAAC,OAAO,CAAC,MAAM,UAAU;QACxG,EAAE;KACH,CAAC;IACF,uCAAuC;IACvC,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;IAC3F,KAAK,MAAM,CAAC,KAAK,EAAE,KAAK,CAAC,IAAI,MAAM,EAAE,CAAC;QACpC,KAAK,CAAC,IAAI,CAAC,KAAK,KAAK,KAAK,KAAK,CAAC,MAAM,UAAU,CAAC,CAAC;IACpD,CAAC;IACD,IAAI,GAAG,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CAAC,KAAK,aAAa,KAAK,GAAG,CAAC,OAAO,CAAC,MAAM,UAAU,CAAC,CAAC;IAClE,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC"}

package/dist/src/graph/codeowners-gitlab.d.ts

@@ -19,6 +19,12 @@ export declare function matchOwners(entries: CodeownersEntry[], filePath: string
     owners: string[];
     section?: string;
 };
+/** Single-call helper — avoids triple matchOwners invocations when callers need all three fields. */
+export declare function singleFileOwnership(entries: CodeownersEntry[], filePath: string): {
+    section: string;
+    owners: string[];
+    ownerCount: number;
+};
 export declare function ownerCountOf(entries: CodeownersEntry[], filePath: string): number;
 export declare function sectionOf(entries: CodeownersEntry[], filePath: string): string;
 export declare function sectionAndOwnersOf(entries: CodeownersEntry[], filePath: string): {
@@ -26,4 +32,19 @@ export declare function sectionAndOwnersOf(entries: CodeownersEntry[], filePath:
     owners: string[];
 };
 export declare function hasSections(entries: CodeownersEntry[]): boolean;
+export interface CodeownersGitlabReport {
+    totalEntries: number;
+    hasSections: boolean;
+    sectionNames: string[];
+    ownershipSummary: Array<{
+        file: string;
+        section: string;
+        owners: string[];
+    }>;
+}
+/**
+ * Format a batch file-ownership report for LLM consumption.
+ * Uses singleFileOwnership() to avoid N*3 matchOwners scans.
+ */
+export declare function formatCodeownersGitlab(entries: CodeownersEntry[], filePaths: string[]): string;
 //# sourceMappingURL=codeowners-gitlab.d.ts.map

package/dist/src/graph/codeowners-gitlab.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"codeowners-gitlab.d.ts","sourceRoot":"","sources":["../../../src/graph/codeowners-gitlab.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,aAAa,YAAY,CAAC;AACvC,eAAO,MAAM,gBAAgB,iBAAiB,CAAC;AAE/C,eAAO,MAAM,sBAAsB,UAKlC,CAAC;AAEF,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,OAAO,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,EAAE,CAAC;CACzB;AAID,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,aAAa,GAAG,IAAI,CAUrE;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,wBAAgB,2BAA2B,CAAC,OAAO,EAAE,MAAM,GAAG,eAAe,EAAE,CA0B9E;AAED,wBAAgB,WAAW,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG;IAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,CAUhH;AAYD,qGAAqG;AACrG,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,CAG3I;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEjF;AAED,wBAAgB,SAAS,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9E;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CAGtH;AAED,wBAAgB,WAAW,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,OAAO,CAE/D;AAED,MAAM,WAAW,sBAAsB;IACrC,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,OAAO,CAAC;IACrB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,gBAAgB,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC,CAAC;CAC9E;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,MAAM,CA2B9F"}

package/dist/src/graph/codeowners-gitlab.js

@@ -73,6 +73,11 @@ function pathMatchesPattern(filePath, pattern) {
         return norm.startsWith(pat);
     return norm === pat || norm.endsWith('/' + pat) || norm.startsWith(pat + '/');
 }
+/** Single-call helper — avoids triple matchOwners invocations when callers need all three fields. */
+export function singleFileOwnership(entries, filePath) {
+    const { owners, section } = matchOwners(entries, filePath);
+    return { section: section ?? NO_SECTION_LABEL, owners, ownerCount: owners.length };
+}
 export function ownerCountOf(entries, filePath) {
     return matchOwners(entries, filePath).owners.length;
 }
@@ -86,4 +91,36 @@ export function sectionAndOwnersOf(entries, filePath) {
 export function hasSections(entries) {
     return entries.some(e => e.section !== undefined);
 }
+/**
+ * Format a batch file-ownership report for LLM consumption.
+ * Uses singleFileOwnership() to avoid N*3 matchOwners scans.
+ */
+export function formatCodeownersGitlab(entries, filePaths) {
+    if (entries.length === 0)
+        return 'No CODEOWNERS entries found.';
+    const sections = new Set();
+    const rows = [];
+    for (const fp of filePaths) {
+        const { section, owners } = singleFileOwnership(entries, fp);
+        sections.add(section);
+        rows.push({ file: fp, section, owners });
+    }
+    const unowned = rows.filter(r => r.owners.length === 0);
+    const lines = [
+        `CODEOWNERS (GitLab) — ${entries.length} entries, ${sections.size} section(s)`,
+        `Sections: ${[...sections].join(', ') || '(none)'}`,
+        `Files scanned: ${filePaths.length}  Unowned: ${unowned.length}`,
+        '',
+    ];
+    for (const r of rows) {
+        const ownerStr = r.owners.length > 0 ? r.owners.join(' ') : UNOWNED_LABEL;
+        lines.push(`  ${r.file}  [${r.section}]  ${ownerStr}`);
+    }
+    if (unowned.length > 0) {
+        lines.push('', `Unowned files (${unowned.length}):`);
+        for (const r of unowned)
+            lines.push(`  ${r.file}`);
+    }
+    return lines.join('\n');
+}
 //# sourceMappingURL=codeowners-gitlab.js.map

package/dist/src/graph/codeowners-gitlab.js.map

@@ -1 +1 @@
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package/dist/src/graph/codeowners.d.ts

@@ -9,6 +9,16 @@ export interface OwnershipResult {
     unowned: boolean;
 }
 export declare function parseCodeowners(repoRoot: string): CodeownersEntry[];
+export interface CompiledEntry {
+    owners: string[];
+    re: RegExp;
+}
+/**
+ * Compile an array of CodeownersEntry into CompiledEntry objects so that
+ * globToRegex() runs exactly once per pattern instead of once per file lookup.
+ */
+export declare function compileEntries(entries: CodeownersEntry[]): CompiledEntry[];
+export declare function resolveOwnerCompiled(compiled: CompiledEntry[], filePath: string): string[];
 export declare function resolveOwner(entries: CodeownersEntry[], filePath: string): string[];
 export declare function annotateOwnership(db: Database.Database, repoRoot: string): {
     annotated: number;

package/dist/src/graph/codeowners.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"codeowners.d.ts","sourceRoot":"","sources":["../../../src/graph/codeowners.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAE3C,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAED,MAAM,WAAW,eAAe;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,OAAO,EAAE,OAAO,CAAC;CAClB;AAqDD,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,eAAe,EAAE,CAgCnE;AAID,MAAM,WAAW,aAAa;IAC5B,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,aAAa,EAAE,CAE1E;AAID,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,aAAa,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAO1F;AAID,wBAAgB,YAAY,CAAC,OAAO,EAAE,eAAe,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAanF;AAGD,wBAAgB,iBAAiB,CAC/B,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,QAAQ,EAAE,MAAM,GACf;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAiCxC;AAKD,wBAAgB,YAAY,CAAC,CAAC,SAAS;IAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,CAAA;CAAE,EACjE,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,eAAe,EAAE,GACzB,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CA4BlB"}

package/dist/src/graph/codeowners.js

@@ -81,6 +81,24 @@ export function parseCodeowners(repoRoot) {
     }
     return entries;
 }
+/**
+ * Compile an array of CodeownersEntry into CompiledEntry objects so that
+ * globToRegex() runs exactly once per pattern instead of once per file lookup.
+ */
+export function compileEntries(entries) {
+    return entries.map(e => ({ owners: e.owners, re: globToRegex(e.pattern) }));
+}
+// Resolve owner for a single file path using precompiled regexes.
+// Last matching entry wins (GitHub semantics).
+export function resolveOwnerCompiled(compiled, filePath) {
+    const normalised = filePath.replace(/\\/g, '/').replace(/^\.\//, '');
+    let lastMatch = null;
+    for (const entry of compiled) {
+        if (entry.re.test(normalised))
+            lastMatch = entry;
+    }
+    return lastMatch ? lastMatch.owners : [];
+}
 // Resolve owner for a single file path (relative to repoRoot)
 // Last matching entry wins
 export function resolveOwner(entries, filePath) {
@@ -98,6 +116,8 @@ export function resolveOwner(entries, filePath) {
 // Annotate all File nodes in the DB with their owners (stored in properties.codeowners)
 export function annotateOwnership(db, repoRoot) {
     const entries = parseCodeowners(repoRoot);
+    // Compile regexes once for all file nodes — avoids O(files * patterns) re-compilations.
+    const compiled = compileEntries(entries);
     const fileNodes = db
         .prepare(`SELECT id, file_path, properties FROM nodes WHERE label = 'File' AND file_path IS NOT NULL`)
         .all();
@@ -107,7 +127,7 @@ export function annotateOwnership(db, repoRoot) {
     const updateAll = db.transaction(() => {
         for (const node of fileNodes) {
             const relPath = relative(repoRoot, node.file_path).replace(/\\/g, '/');
-            const owners = resolveOwner(entries, relPath);
+            const owners = resolveOwnerCompiled(compiled, relPath);
             const existing = node.properties ? JSON.parse(node.properties) : {};
             const updated = { ...existing, codeowners: owners };
             update.run(JSON.stringify(updated), node.id);
@@ -126,6 +146,8 @@ export function annotateOwnership(db, repoRoot) {
 // Findings with no filePath or no matching pattern bucket under 'unowned'
 // If a file has multiple owners, the finding appears under each owner key
 export function groupByOwner(findings, entries) {
+    // Compile patterns once for all findings to avoid O(findings * patterns) regex constructions.
+    const compiled = compileEntries(entries);
     const result = new Map();
     for (const finding of findings) {
         if (!finding.filePath) {
@@ -134,7 +156,7 @@ export function groupByOwner(findings, entries) {
             result.set('unowned', bucket);
             continue;
         }
-        const owners = resolveOwner(entries, finding.filePath);
+        const owners = resolveOwnerCompiled(compiled, finding.filePath);
         if (owners.length === 0) {
             const bucket = result.get('unowned') ?? [];
             bucket.push(finding);

package/dist/src/graph/codeowners.js.map

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package/dist/src/graph/complexity.d.ts

@@ -34,6 +34,16 @@ export declare function computeCrapScore(cc: number, coverage: number): number;
  * - Cognitive complexity proxy: (endLine - startLine) / 10, capped at 20
  * - LOC: endLine - startLine + 1 (or 1 if missing)
  * - CRAP: computed with coverage = 0 (worst-case, no test data available)
+ *
+ * Batches all SQL work to avoid N+1 queries (2 GROUP BY queries replace 2×N individual queries).
  */
 export declare function computeComplexity(db: MonographDb): ComplexityReport;
+/**
+ * Format a ComplexityReport as structured text with file:line hints for LLM navigation.
+ *
+ * @param report - ComplexityReport from computeComplexity()
+ * @param topN - number of worst offenders to list (default 10)
+ * @returns structured text suitable for LLM consumption
+ */
+export declare function formatComplexity(report: ComplexityReport, topN?: number): string;
 //# sourceMappingURL=complexity.d.ts.map

package/dist/src/graph/complexity.d.ts.map

@@ -1 +1 @@
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package/dist/src/graph/complexity.js

@@ -7,6 +7,12 @@ export function computeCrapScore(cc, coverage) {
     const cov = Math.max(0, Math.min(1, coverage));
     return cc * cc * Math.pow(1 - cov, 3) + cc;
 }
+function percentile(arr, p) {
+    if (arr.length === 0)
+        return 0;
+    const idx = Math.floor((p / 100) * (arr.length - 1));
+    return arr[idx];
+}
 /**
  * Compute cyclomatic and cognitive complexity for all Function/Method nodes
  * in the knowledge graph. Uses graph degree as a proxy for decision points
@@ -16,51 +22,54 @@ export function computeCrapScore(cc, coverage) {
  * - Cognitive complexity proxy: (endLine - startLine) / 10, capped at 20
  * - LOC: endLine - startLine + 1 (or 1 if missing)
  * - CRAP: computed with coverage = 0 (worst-case, no test data available)
+ *
+ * Batches all SQL work to avoid N+1 queries (2 GROUP BY queries replace 2×N individual queries).
  */
 export function computeComplexity(db) {
-    // Query all function/method nodes
+    // Fetch all function/method nodes in one query
     const rows = db.prepare(`
     SELECT id, name, file_path, start_line, end_line, properties
     FROM nodes
     WHERE label IN ('Function', 'Method')
   `).all();
+    if (rows.length === 0) {
+        return { functions: [], p50cc: 0, p90cc: 0, p95cc: 0, highComplexityCount: 0, criticalCount: 0 };
+    }
+    // ── Batch edge counts: 2 GROUP BY queries replace 2×N individual queries ─
+    const callsMap = new Map();
+    for (const { source_id, c } of db.prepare(`
+    SELECT source_id, COUNT(*) as c FROM edges WHERE relation = 'CALLS' GROUP BY source_id
+  `).all()) {
+        callsMap.set(source_id, c);
+    }
+    const accessesMap = new Map();
+    for (const { source_id, c } of db.prepare(`
+    SELECT source_id, COUNT(*) as c FROM edges WHERE relation = 'ACCESSES' GROUP BY source_id
+  `).all()) {
+        accessesMap.set(source_id, c);
+    }
+    // ── Compute metrics for each function ────────────────────────────────────
     const functions = [];
+    const propUpdates = [];
     for (const row of rows) {
         const props = row.properties ? JSON.parse(row.properties) : {};
-        // Outgoing CALLS edges (decision points proxy)
-        const callsCount = db.prepare(`
-      SELECT COUNT(*) as c FROM edges
-      WHERE source_id = ? AND relation = 'CALLS'
-    `).get(row.id).c;
-        // Outgoing ACCESSES edges
-        const accessesCount = db.prepare(`
-      SELECT COUNT(*) as c FROM edges
-      WHERE source_id = ? AND relation = 'ACCESSES'
-    `).get(row.id).c;
-        // Cyclomatic complexity proxy: decision points + 1
+        const callsCount = callsMap.get(row.id) ?? 0;
+        const accessesCount = accessesMap.get(row.id) ?? 0;
         const cyclomaticComplexity = Math.round(callsCount * 0.5 + accessesCount * 0.2 + 1);
-        // Cognitive complexity proxy: nesting depth approximation capped at 20
         const lineSpan = (row.start_line != null && row.end_line != null)
             ? row.end_line - row.start_line
             : 0;
         const cognitiveComplexity = Math.min(Math.round(lineSpan / 10), 20);
-        // LOC
         const linesOfCode = (row.start_line != null && row.end_line != null)
             ? row.end_line - row.start_line + 1
             : 1;
-        // Param count from stored properties
         const paramCount = typeof props.paramCount === 'number' ? props.paramCount : 0;
-        // CRAP score with no coverage data (worst-case: coverage = 0)
         const crapScore = computeCrapScore(cyclomaticComplexity, 0);
-        // Store computed metrics back onto the node properties
-        const updatedProps = {
-            ...props,
-            cyclomaticComplexity,
-            cognitiveComplexity,
-            crapScore,
-        };
-        db.prepare('UPDATE nodes SET properties = ? WHERE id = ?')
-            .run(JSON.stringify(updatedProps), row.id);
+        // Stage property update — batched in a single transaction below
+        propUpdates.push({
+            id: row.id,
+            props: JSON.stringify({ ...props, cyclomaticComplexity, cognitiveComplexity, crapScore }),
+        });
         functions.push({
             nodeId: row.id,
             name: row.name,
@@ -74,27 +83,68 @@ export function computeComplexity(db) {
             crapScore,
         });
     }
-    // Compute percentiles for cyclomatic complexity
+    // ── Batch UPDATE all property writes in one transaction ───────────────────
+    const updateStmt = db.prepare('UPDATE nodes SET properties = ? WHERE id = ?');
+    db.transaction((updates) => {
+        for (const { id, props } of updates)
+            updateStmt.run(props, id);
+    })(propUpdates);
+    // ── Compute percentiles ───────────────────────────────────────────────────
     const ccValues = functions.map(f => f.cyclomaticComplexity).sort((a, b) => a - b);
-    const len = ccValues.length;
-    function percentile(arr, p) {
-        if (arr.length === 0)
-            return 0;
-        const idx = Math.floor((p / 100) * (arr.length - 1));
-        return arr[idx];
-    }
-    const p50cc = percentile(ccValues, 50);
-    const p90cc = percentile(ccValues, 90);
-    const p95cc = percentile(ccValues, 95);
-    const highComplexityCount = functions.filter(f => f.cyclomaticComplexity > 10).length;
-    const criticalCount = functions.filter(f => f.cyclomaticComplexity > 20).length;
     return {
         functions,
-        p50cc,
-        p90cc,
-        p95cc,
-        highComplexityCount,
-        criticalCount,
+        p50cc: percentile(ccValues, 50),
+        p90cc: percentile(ccValues, 90),
+        p95cc: percentile(ccValues, 95),
+        highComplexityCount: functions.filter(f => f.cyclomaticComplexity > 10).length,
+        criticalCount: functions.filter(f => f.cyclomaticComplexity > 20).length,
     };
 }
+/**
+ * Format a ComplexityReport as structured text with file:line hints for LLM navigation.
+ *
+ * @param report - ComplexityReport from computeComplexity()
+ * @param topN - number of worst offenders to list (default 10)
+ * @returns structured text suitable for LLM consumption
+ */
+export function formatComplexity(report, topN = 10) {
+    const { functions, p50cc, p90cc, p95cc, highComplexityCount, criticalCount } = report;
+    if (functions.length === 0) {
+        return 'complexity: no Function/Method nodes found in graph\n';
+    }
+    const lines = [
+        `complexity: ${functions.length} functions analysed`,
+        `  p50_cc: ${p50cc}  p90_cc: ${p90cc}  p95_cc: ${p95cc}`,
+        `  high(cc>10): ${highComplexityCount}  critical(cc>20): ${criticalCount}`,
+        '',
+    ];
+    // Sort by crapScore descending (worst first)
+    const worst = [...functions]
+        .sort((a, b) => b.crapScore - a.crapScore)
+        .slice(0, topN);
+    if (worst.length > 0) {
+        lines.push(`top_${topN}_worst_crap:`);
+        for (const fn of worst) {
+            const loc = fn.filePath
+                ? `${fn.filePath}:${fn.startLine ?? 1}`
+                : `<unknown>:1`;
+            lines.push(`  - ${fn.name}`);
+            lines.push(`    file: ${loc}`);
+            lines.push(`    cc: ${fn.cyclomaticComplexity}  crap: ${fn.crapScore.toFixed(1)}  loc: ${fn.linesOfCode}`);
+        }
+        lines.push('');
+    }
+    const critical = functions.filter(f => f.cyclomaticComplexity > 20);
+    if (critical.length > 0) {
+        lines.push(`critical_functions(cc>20): ${critical.length}`);
+        for (const fn of critical.slice(0, 5)) {
+            const loc = fn.filePath ? `${fn.filePath}:${fn.startLine ?? 1}` : `<unknown>:1`;
+            lines.push(`  - ${fn.name}  file: ${loc}  cc: ${fn.cyclomaticComplexity}`);
+        }
+        if (critical.length > 5)
+            lines.push(`  ... and ${critical.length - 5} more`);
+        lines.push('');
+    }
+    return lines.join('\n');
+}
 //# sourceMappingURL=complexity.js.map

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package/dist/src/graph/cross-reference-findings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cross-reference-findings.d.ts","sourceRoot":"","sources":["../../../src/graph/cross-reference-findings.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,YAAY,GACpB;IAAE,IAAI,EAAE,aAAa,CAAA;CAAE,GACvB;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,GAC7C;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,aAAa,EAAE,gBAAgB,CAAC;IAChC,YAAY,EAAE,YAAY,CAAC;IAC3B,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,gBAAgB,EAAE,eAAe,EAAE,CAAC;IACpC,mBAAmB,EAAE,MAAM,CAAC;IAC5B,uBAAuB,EAAE,MAAM,CAAC;CACjC;AAED,MAAM,WAAW,uBAAuB;IACtC,WAAW,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACzB,aAAa,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACzE,WAAW,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACtE;AAED,MAAM,WAAW,yBAAyB;IACxC,WAAW,EAAE,KAAK,CAAC;QAAE,SAAS,EAAE,gBAAgB,EAAE,CAAA;KAAE,CAAC,CAAC;CACvD;AAED,wBAAgB,cAAc,CAAC,WAAW,EAAE,yBAAyB,EAAE,QAAQ,EAAE,uBAAuB,GAAG,oBAAoB,CAyB9H;AAED,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,oBAAoB,GAAG,GAAG,CAAC,MAAM,CAAC,CAE9E"}
+{"version":3,"file":"cross-reference-findings.d.ts","sourceRoot":"","sources":["../../../src/graph/cross-reference-findings.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,YAAY,GACpB;IAAE,IAAI,EAAE,aAAa,CAAA;CAAE,GACvB;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,GAC7C;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,aAAa,EAAE,gBAAgB,CAAC;IAChC,YAAY,EAAE,YAAY,CAAC;IAC3B,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,gBAAgB,EAAE,eAAe,EAAE,CAAC;IACpC,mBAAmB,EAAE,MAAM,CAAC;IAC5B,uBAAuB,EAAE,MAAM,CAAC;CACjC;AAED,MAAM,WAAW,uBAAuB;IACtC,WAAW,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACzB,aAAa,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACzE,WAAW,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACtE;AAED,MAAM,WAAW,yBAAyB;IACxC,WAAW,EAAE,KAAK,CAAC;QAAE,SAAS,EAAE,gBAAgB,EAAE,CAAA;KAAE,CAAC,CAAC;CACvD;AAED,wBAAgB,cAAc,CAAC,WAAW,EAAE,yBAAyB,EAAE,QAAQ,EAAE,uBAAuB,GAAG,oBAAoB,CA8C9H;AAED,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,oBAAoB,GAAG,GAAG,CAAC,MAAM,CAAC,CAE9E"}

package/dist/src/graph/cross-reference-findings.js

@@ -1,6 +1,21 @@
 export function crossReference(duplication, deadCode) {
     const findings = [];
     let clonesInUnusedFiles = 0, clonesWithUnusedExports = 0;
+    // Preindex unusedExports and unusedTypes by file path to avoid O(N) Array.find
+    // per clone instance. Each lookup becomes an O(1) Map get + a short in-range scan
+    // over the candidates for that specific file.
+    const exportsByPath = new Map();
+    for (const e of deadCode.unusedExports) {
+        const bucket = exportsByPath.get(e.path) ?? [];
+        bucket.push({ exportName: e.exportName, line: e.line });
+        exportsByPath.set(e.path, bucket);
+    }
+    const typesByPath = new Map();
+    for (const t of deadCode.unusedTypes) {
+        const bucket = typesByPath.get(t.path) ?? [];
+        bucket.push({ typeName: t.typeName, line: t.line });
+        typesByPath.set(t.path, bucket);
+    }
     for (let gi = 0; gi < duplication.cloneGroups.length; gi++) {
         for (const inst of duplication.cloneGroups[gi].instances) {
             if (deadCode.unusedFiles.has(inst.file)) {
@@ -8,13 +23,15 @@ export function crossReference(duplication, deadCode) {
                 clonesInUnusedFiles++;
                 continue;
             }
-            const overlap = deadCode.unusedExports.find(e => e.path === inst.file && e.line >= inst.startLine && e.line <= inst.endLine);
+            const exportsForFile = exportsByPath.get(inst.file);
+            const overlap = exportsForFile?.find(e => e.line >= inst.startLine && e.line <= inst.endLine);
             if (overlap) {
                 findings.push({ cloneInstance: inst, deadCodeKind: { type: 'unused-export', exportName: overlap.exportName }, groupIndex: gi });
                 clonesWithUnusedExports++;
                 continue;
             }
-            const typeOverlap = deadCode.unusedTypes.find(t => t.path === inst.file && t.line >= inst.startLine && t.line <= inst.endLine);
+            const typesForFile = typesByPath.get(inst.file);
+            const typeOverlap = typesForFile?.find(t => t.line >= inst.startLine && t.line <= inst.endLine);
             if (typeOverlap) {
                 findings.push({ cloneInstance: inst, deadCodeKind: { type: 'unused-type', typeName: typeOverlap.typeName }, groupIndex: gi });
                 clonesWithUnusedExports++;

package/dist/src/graph/cross-reference-findings.js.map

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+{"version":3,"file":"cross-reference-findings.js","sourceRoot":"","sources":["../../../src/graph/cross-reference-findings.ts"],"names":[],"mappings":"AAkCA,MAAM,UAAU,cAAc,CAAC,WAAsC,EAAE,QAAiC;IACtG,MAAM,QAAQ,GAAsB,EAAE,CAAC;IACvC,IAAI,mBAAmB,GAAG,CAAC,EAAE,uBAAuB,GAAG,CAAC,CAAC;IAEzD,+EAA+E;IAC/E,kFAAkF;IAClF,8CAA8C;IAC9C,MAAM,aAAa,GAAG,IAAI,GAAG,EAAuD,CAAC;IACrF,KAAK,MAAM,CAAC,IAAI,QAAQ,CAAC,aAAa,EAAE,CAAC;QACvC,MAAM,MAAM,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;QAC/C,MAAM,CAAC,IAAI,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;QACxD,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IACpC,CAAC;IAED,MAAM,WAAW,GAAG,IAAI,GAAG,EAAqD,CAAC;IACjF,KAAK,MAAM,CAAC,IAAI,QAAQ,CAAC,WAAW,EAAE,CAAC;QACrC,MAAM,MAAM,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;QAC7C,MAAM,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;QACpD,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAClC,CAAC;IAED,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC;QAC3D,KAAK,MAAM,IAAI,IAAI,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,SAAS,EAAE,CAAC;YACzD,IAAI,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;gBACxC,QAAQ,CAAC,IAAI,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAC;gBAC9F,mBAAmB,EAAE,CAAC;gBACtB,SAAS;YACX,CAAC;YAED,MAAM,cAAc,GAAG,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACpD,MAAM,OAAO,GAAG,cAAc,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,SAAS,IAAI,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,CAAC,CAAC;YAC9F,IAAI,OAAO,EAAE,CAAC;gBACZ,QAAQ,CAAC,IAAI,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,UAAU,EAAE,OAAO,CAAC,UAAU,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAC;gBAChI,uBAAuB,EAAE,CAAC;gBAC1B,SAAS;YACX,CAAC;YAED,MAAM,YAAY,GAAG,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAChD,MAAM,WAAW,GAAG,YAAY,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,SAAS,IAAI,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,CAAC,CAAC;YAChG,IAAI,WAAW,EAAE,CAAC;gBAChB,QAAQ,CAAC,IAAI,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,YAAY,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,QAAQ,EAAE,WAAW,CAAC,QAAQ,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAC;gBAC9H,uBAAuB,EAAE,CAAC;YAC5B,CAAC;QACH,CAAC;IACH,CAAC;IACD,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,mBAAmB,EAAE,uBAAuB,EAAE,CAAC;AACtF,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,MAA4B;IAC/D,OAAO,IAAI,GAAG,CAAC,MAAM,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC;AACjE,CAAC"}

package/dist/src/graph/cross-reference.d.ts

@@ -19,4 +19,8 @@ export interface CrossReferenceReport {
  * @param db - monograph database
  */
 export declare function crossReferenceDuplicatesAndDeadCode(db: MonographDb): CrossReferenceReport;
+/**
+ * Format a CrossReferenceReport as structured text for LLM consumption.
+ */
+export declare function formatCrossReferenceReport(report: CrossReferenceReport): string;
 //# sourceMappingURL=cross-reference.d.ts.map

package/dist/src/graph/cross-reference.d.ts.map

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