@monoes/monograph 1.2.0 → 1.2.1

package/dist/src/pipeline/phases/contextual-proximity.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/cross-file.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cross-file.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/cross-file.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,gBAAgB,CAAC;AAMnE,MAAM,WAAW,eAAe;IAC9B,aAAa,EAAE,aAAa,EAAE,CAAC;CAChC;AAED,eAAO,MAAM,cAAc,EAAE,aAAa,CAAC,eAAe,CAsFzD,CAAC"}

package/dist/src/pipeline/phases/cross-file.js

@@ -6,25 +6,47 @@ export const crossFilePhase = {
     async execute(_ctx, deps) {
         const { allEdges, symbolNodes } = deps.get('parse');
         const { fileNodes } = deps.get('structure');
-        // Symbol name → symbol node ID
+        /** Extract the last path segment of a '/'-separated string (faster than split+pop). */
+        function lastSegment(s) {
+            const idx = s.lastIndexOf('/');
+            return idx === -1 ? s : s.slice(idx + 1);
+        }
+        /** Strip leading `import_` prefix, then return the last path segment. */
+        function targetBasename(rawId) {
+            const stripped = rawId.startsWith('import_') ? rawId.slice(7) : rawId;
+            return lastSegment(stripped);
+        }
+        // Symbol name → symbol node ID.
+        // Pre-key lowercase variants so IMPORTS resolution is a single Map.get() instead of two.
         const nameIndex = new Map();
         for (const node of symbolNodes) {
             nameIndex.set(node.name, node.id);
-            if (node.normLabel)
+            const lower = node.name.toLowerCase();
+            if (lower !== node.name)
+                nameIndex.set(lower, node.id);
+            if (node.normLabel) {
                 nameIndex.set(node.normLabel, node.id);
+                const normLower = node.normLabel.toLowerCase();
+                if (normLower !== node.normLabel)
+                    nameIndex.set(normLower, node.id);
+            }
         }
-        // Basename (without extension) → File node ID, for resolving RE_EXPORTS
+        // Basename (without extension) → File node ID, for resolving RE_EXPORTS.
+        // Use lastIndexOf to avoid allocating a full split array per file path.
         const fileBasenameIndex = new Map();
         for (const fileNode of fileNodes) {
-            const basename = (fileNode.filePath ?? '').split('/').pop() ?? '';
-            const noExt = basename.replace(/\.[^.]+$/, '');
-            fileBasenameIndex.set(noExt.toLowerCase(), fileNode.id);
-            fileBasenameIndex.set(basename.toLowerCase(), fileNode.id);
+            const basename = lastSegment(fileNode.filePath ?? '').toLowerCase();
+            const dotIdx = basename.lastIndexOf('.');
+            const noExt = dotIdx === -1 ? basename : basename.slice(0, dotIdx);
+            fileBasenameIndex.set(basename, fileNode.id);
+            if (noExt !== basename)
+                fileBasenameIndex.set(noExt, fileNode.id);
         }
         const resolvedEdges = [];
         for (const edge of allEdges) {
             if (edge.relation === 'IMPORTS') {
-                const targetName = edge.targetId.replace(/^import_/, '').split('/').pop() ?? '';
+                const targetName = targetBasename(edge.targetId);
+                // Single lookup — lowercase variants are pre-keyed in nameIndex
                 const resolvedId = nameIndex.get(targetName) ?? nameIndex.get(targetName.toLowerCase());
                 if (resolvedId && resolvedId !== edge.targetId) {
                     resolvedEdges.push({
@@ -37,12 +59,11 @@ export const crossFilePhase = {
                 }
             }
             else if (edge.relation === 'RE_EXPORTS') {
-                // Resolve to a File node ID
-                const rawTarget = edge.targetId.replace(/^import_/, '');
-                const basename = rawTarget.split('/').pop() ?? '';
-                const noExt = basename.replace(/\.[^.]+$/, '');
-                const resolvedId = fileBasenameIndex.get(basename.toLowerCase())
-                    ?? fileBasenameIndex.get(noExt.toLowerCase());
+                // Resolve to a File node ID using the pre-built basename index
+                const basename = targetBasename(edge.targetId).toLowerCase();
+                const dotIdx = basename.lastIndexOf('.');
+                const noExt = dotIdx === -1 ? basename : basename.slice(0, dotIdx);
+                const resolvedId = fileBasenameIndex.get(basename) ?? fileBasenameIndex.get(noExt);
                 if (resolvedId && resolvedId !== edge.targetId) {
                     resolvedEdges.push({
                         ...edge,

package/dist/src/pipeline/phases/cross-file.js.map

@@ -1 +1 @@
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+{"version":3,"file":"cross-file.js","sourceRoot":"","sources":["../../../../src/pipeline/phases/cross-file.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,6BAA6B,CAAC;AAQ1D,MAAM,CAAC,MAAM,cAAc,GAAmC;IAC5D,IAAI,EAAE,YAAY;IAClB,IAAI,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC;IAC5B,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI;QACtB,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAgB,CAAC;QACnE,MAAM,EAAE,SAAS,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,WAAW,CAAoB,CAAC;QAE/D,uFAAuF;QACvF,SAAS,WAAW,CAAC,CAAS;YAC5B,MAAM,GAAG,GAAG,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;YAC/B,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC3C,CAAC;QAED,yEAAyE;QACzE,SAAS,cAAc,CAAC,KAAa;YACnC,MAAM,QAAQ,GAAG,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;YACtE,OAAO,WAAW,CAAC,QAAQ,CAAC,CAAC;QAC/B,CAAC;QAED,gCAAgC;QAChC,yFAAyF;QACzF,MAAM,SAAS,GAAG,IAAI,GAAG,EAAkB,CAAC;QAC5C,KAAK,MAAM,IAAI,IAAI,WAAW,EAAE,CAAC;YAC/B,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;YAClC,MAAM,KAAK,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC;YACtC,IAAI,KAAK,KAAK,IAAI,CAAC,IAAI;gBAAE,SAAS,CAAC,GAAG,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;YACvD,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;gBACnB,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;gBACvC,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,WAAW,EAAE,CAAC;gBAC/C,IAAI,SAAS,KAAK,IAAI,CAAC,SAAS;oBAAE,SAAS,CAAC,GAAG,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC;YACtE,CAAC;QACH,CAAC;QAED,yEAAyE;QACzE,wEAAwE;QACxE,MAAM,iBAAiB,GAAG,IAAI,GAAG,EAAkB,CAAC;QACpD,KAAK,MAAM,QAAQ,IAAI,SAAS,EAAE,CAAC;YACjC,MAAM,QAAQ,GAAG,WAAW,CAAC,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;YACpE,MAAM,MAAM,GAAG,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;YACzC,MAAM,KAAK,GAAG,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;YACnE,iBAAiB,CAAC,GAAG,CAAC,QAAQ,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC;YAC7C,IAAI,KAAK,KAAK,QAAQ;gBAAE,iBAAiB,CAAC,GAAG,CAAC,KAAK,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC;QACpE,CAAC;QAED,MAAM,aAAa,GAAoB,EAAE,CAAC;QAE1C,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;YAC5B,IAAI,IAAI,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;gBAChC,MAAM,UAAU,GAAG,cAAc,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBACjD,gEAAgE;gBAChE,MAAM,UAAU,GAAG,SAAS,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,SAAS,CAAC,GAAG,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;gBAExF,IAAI,UAAU,IAAI,UAAU,KAAK,IAAI,CAAC,QAAQ,EAAE,CAAC;oBAC/C,aAAa,CAAC,IAAI,CAAC;wBACjB,GAAG,IAAI;wBACP,EAAE,EAAE,MAAM,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,EAAE,UAAU,CAAC;wBACjD,QAAQ,EAAE,UAAU;wBACpB,UAAU,EAAE,UAAU;wBACtB,eAAe,EAAE,gBAAgB,CAAC,QAAQ;qBAC3C,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;iBAAM,IAAI,IAAI,CAAC,QAAQ,KAAK,YAAY,EAAE,CAAC;gBAC1C,+DAA+D;gBAC/D,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,CAAC;gBAC7D,MAAM,MAAM,GAAG,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;gBACzC,MAAM,KAAK,GAAG,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;gBACnE,MAAM,UAAU,GAAG,iBAAiB,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,iBAAiB,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;gBAEnF,IAAI,UAAU,IAAI,UAAU,KAAK,IAAI,CAAC,QAAQ,EAAE,CAAC;oBAC/C,aAAa,CAAC,IAAI,CAAC;wBACjB,GAAG,IAAI;wBACP,EAAE,EAAE,MAAM,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,EAAE,oBAAoB,CAAC;wBAC3D,QAAQ,EAAE,UAAU;wBACpB,UAAU,EAAE,UAAU;wBACtB,eAAe,EAAE,gBAAgB,CAAC,QAAQ;qBAC3C,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;QACH,CAAC;QAED,IAAI,IAAI,CAAC,EAAE,IAAI,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACxC,WAAW,CAAC,IAAI,CAAC,EAAE,EAAE,aAAa,CAAC,CAAC;QACtC,CAAC;QAED,OAAO,EAAE,aAAa,EAAE,CAAC;IAC3B,CAAC;CACF,CAAC"}

package/dist/src/pipeline/phases/field-access.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"field-access.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/field-access.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,YAAY,GAAG,MAAM,GAAG,OAAO,CAAC;AAE5C,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,YAAY,CAAC;IACrB,IAAI,EAAE,MAAM,CAAC;CACd;AAMD,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,WAAW,EAAE,CA4BrG"}
+{"version":3,"file":"field-access.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/field-access.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,YAAY,GAAG,MAAM,GAAG,OAAO,CAAC;AAE5C,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,YAAY,CAAC;IACrB,IAAI,EAAE,MAAM,CAAC;CACd;AAMD,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,WAAW,EAAE,CAmCrG"}

package/dist/src/pipeline/phases/field-access.js

@@ -5,12 +5,17 @@ export function extractFieldAccesses(source, varName, filePath) {
     const results = [];
     const lines = source.split('\n');
     const escapedName = escapeRegexChars(varName);
+    // Hoist regex construction outside the loop — both patterns are fixed for the
+    // entire call, so creating them once avoids O(lines) RegExp allocations.
+    // Write: varName.field = or varName.field +=/-=/*=
+    const writeRe = new RegExp(`\\b${escapedName}\\.(\\w+)\\s*(?:\\+|-|\\*|\\/|%)?=(?!=)`, 'g');
+    // Read: varName.field NOT followed by assignment operator
+    const readRe = new RegExp(`\\b${escapedName}\\.(\\w+)`, 'g');
     for (let i = 0; i < lines.length; i++) {
         const line = lines[i];
-        // Write: varName.field = or varName.field +=/-=/*=
-        const writeRe = new RegExp(`\\b${escapedName}\\.(\\w+)\\s*(?:\\+|-|\\*|\\/|%)?=(?!=)`, 'g');
-        // Read: varName.field NOT followed by assignment operator
-        const readRe = new RegExp(`\\b${escapedName}\\.(\\w+)`, 'g');
+        // Reset stateful lastIndex before each line (required for reused /g regexes).
+        writeRe.lastIndex = 0;
+        readRe.lastIndex = 0;
         const writeFields = new Set();
         let m;
         while ((m = writeRe.exec(line)) !== null) {

package/dist/src/pipeline/phases/field-access.js.map

@@ -1 +1 @@
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+{"version":3,"file":"field-access.js","sourceRoot":"","sources":["../../../../src/pipeline/phases/field-access.ts"],"names":[],"mappings":"AASA,SAAS,gBAAgB,CAAC,CAAS;IACjC,OAAO,CAAC,CAAC,OAAO,CAAC,qBAAqB,EAAE,MAAM,CAAC,CAAC;AAClD,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,MAAc,EAAE,OAAe,EAAE,QAAgB;IACpF,MAAM,OAAO,GAAkB,EAAE,CAAC;IAClC,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACjC,MAAM,WAAW,GAAG,gBAAgB,CAAC,OAAO,CAAC,CAAC;IAE9C,8EAA8E;IAC9E,yEAAyE;IACzE,mDAAmD;IACnD,MAAM,OAAO,GAAG,IAAI,MAAM,CAAC,MAAM,WAAW,yCAAyC,EAAE,GAAG,CAAC,CAAC;IAC5F,0DAA0D;IAC1D,MAAM,MAAM,GAAG,IAAI,MAAM,CAAC,MAAM,WAAW,WAAW,EAAE,GAAG,CAAC,CAAC;IAE7D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QAEtB,8EAA8E;QAC9E,OAAO,CAAC,SAAS,GAAG,CAAC,CAAC;QACtB,MAAM,CAAC,SAAS,GAAG,CAAC,CAAC;QAErB,MAAM,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;QACtC,IAAI,CAAyB,CAAC;QAE9B,OAAO,CAAC,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;YACzC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACtB,OAAO,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACvE,CAAC;QAED,OAAO,CAAC,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;YACxC,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC3B,OAAO,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YACtE,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC"}

package/dist/src/pipeline/phases/god-nodes.d.ts

@@ -21,4 +21,8 @@ export interface GodNodesOutput {
     thresholds: GodNodesThresholds;
 }
 export declare const godNodesPhase: PipelinePhase<GodNodesOutput>;
+/**
+ * Format god-node results as structured text with file:line hints for LLM navigation.
+ */
+export declare function formatGodNodes(output: GodNodesOutput): string;
 //# sourceMappingURL=god-nodes.d.ts.map

package/dist/src/pipeline/phases/god-nodes.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"god-nodes.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/god-nodes.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,OAAO,EAAiB,MAAM,gBAAgB,CAAC;AAM7D,MAAM,MAAM,eAAe,GACvB,iBAAiB,GACjB,aAAa,GACb,kBAAkB,GAClB,eAAe,GACf,iBAAiB,GACjB,aAAa,CAAC;AAElB,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,CAAC,OAAO,GAAG;QAAE,QAAQ,EAAE,eAAe,CAAC;QAAC,mBAAmB,EAAE,kBAAkB,EAAE,CAAA;KAAE,CAAC,EAAE,CAAC;IACjG,UAAU,EAAE,kBAAkB,CAAC;CAChC;AAQD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA8EvD,CAAC;AAEF;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,cAAc,GAAG,MAAM,CA+B7D"}

package/dist/src/pipeline/phases/god-nodes.js

@@ -18,15 +18,18 @@ export const godNodesPhase = {
             outDeg.set(e.sourceId, (outDeg.get(e.sourceId) ?? 0) + 1);
             inDeg.set(e.targetId, (inDeg.get(e.targetId) ?? 0) + 1);
         }
-        // Compute degree distributions from all symbol nodes
-        const allFanIn = symbolNodes
-            .filter(n => !EXCLUDED_LABELS.has(n.label))
-            .map(n => inDeg.get(n.id) ?? 0)
-            .sort((a, b) => a - b);
-        const allFanOut = symbolNodes
-            .filter(n => !EXCLUDED_LABELS.has(n.label))
-            .map(n => outDeg.get(n.id) ?? 0)
-            .sort((a, b) => a - b);
+        // Compute degree distributions from all symbol nodes in a single pass
+        // (avoids two separate filter + map passes over potentially large arrays)
+        const allFanIn = [];
+        const allFanOut = [];
+        for (const n of symbolNodes) {
+            if (EXCLUDED_LABELS.has(n.label))
+                continue;
+            allFanIn.push(inDeg.get(n.id) ?? 0);
+            allFanOut.push(outDeg.get(n.id) ?? 0);
+        }
+        allFanIn.sort((a, b) => a - b);
+        allFanOut.sort((a, b) => a - b);
         const thresholds = {
             p75FanIn: percentile(allFanIn, 75),
             p90FanIn: percentile(allFanIn, 90),
@@ -74,4 +77,35 @@ export const godNodesPhase = {
         return { godNodes, thresholds };
     },
 };
+/**
+ * Format god-node results as structured text with file:line hints for LLM navigation.
+ */
+export function formatGodNodes(output) {
+    const { godNodes, thresholds } = output;
+    if (godNodes.length === 0) {
+        return 'god-nodes: none\nstatus: no high-centrality nodes detected\n';
+    }
+    const lines = [
+        `god-nodes: ${godNodes.length} high-centrality node(s) detected`,
+        `thresholds: fanIn p75=${thresholds.p75FanIn} p90=${thresholds.p90FanIn} p95=${thresholds.p95FanIn}; fanOut p75=${thresholds.p75FanOut} p90=${thresholds.p90FanOut}`,
+        '',
+    ];
+    for (let i = 0; i < godNodes.length; i++) {
+        const n = godNodes[i];
+        const loc = n.filePath
+            ? `${n.filePath}${n.startLine !== undefined ? `:${n.startLine}` : ''}`
+            : n.id;
+        lines.push(`[${i + 1}] ${n.name} (${n.label}) — ${n.category}`);
+        lines.push(`  file: ${loc}`);
+        lines.push(`  degree: ${n.degree} (fanIn=${n.inDegree}, fanOut=${n.outDegree})`);
+        for (const f of n.contributingFactors) {
+            lines.push(`  factor: ${f.metric}=${f.value} (threshold=${f.threshold})`);
+        }
+        lines.push('');
+    }
+    const bridgeCount = godNodes.filter(n => n.category === 'BRIDGE_NODE').length;
+    const highCentralityCount = godNodes.length - bridgeCount;
+    lines.push(`summary: ${highCentralityCount} HIGH_CENTRALITY, ${bridgeCount} BRIDGE_NODE`);
+    return lines.join('\n');
+}
 //# sourceMappingURL=god-nodes.js.map

package/dist/src/pipeline/phases/god-nodes.js.map

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package/dist/src/pipeline/phases/import-resolver.d.ts

@@ -9,5 +9,16 @@ export interface ImportResolverOutput {
 }
 export declare function detectWorkspacePackages(repoPath: string): WorkspacePackage[];
 export declare function resolveWorkspaceImport(importSpecifier: string, packages: WorkspacePackage[]): string | null;
+/**
+ * Build a Map<packageName, packagePath> index from a WorkspacePackage array.
+ * Use this when resolveWorkspaceImport will be called many times (e.g. per import
+ * statement across a whole repo) to reduce resolution cost from O(N*I) to O(N+I).
+ */
+export declare function buildPackageIndex(packages: WorkspacePackage[]): Map<string, string>;
+/**
+ * O(1) workspace import resolution using a pre-built package index.
+ * Falls back to prefix scan only for sub-path imports (e.g. `pkg/subpath`).
+ */
+export declare function resolveWorkspaceImportFromIndex(importSpecifier: string, index: Map<string, string>): string | null;
 export declare const importResolverPhase: PipelinePhase<ImportResolverOutput>;
 //# sourceMappingURL=import-resolver.d.ts.map

package/dist/src/pipeline/phases/import-resolver.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"import-resolver.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/import-resolver.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAElE,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,oBAAoB;IACnC,iBAAiB,EAAE,gBAAgB,EAAE,CAAC;IACtC,aAAa,EAAE,MAAM,CAAC;CACvB;AAkBD,wBAAgB,uBAAuB,CAAC,QAAQ,EAAE,MAAM,GAAG,gBAAgB,EAAE,CA4B5E;AAED,wBAAgB,sBAAsB,CACpC,eAAe,EAAE,MAAM,EACvB,QAAQ,EAAE,gBAAgB,EAAE,GAC3B,MAAM,GAAG,IAAI,CAOf;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,gBAAgB,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAMnF;AAED;;;GAGG;AACH,wBAAgB,+BAA+B,CAC7C,eAAe,EAAE,MAAM,EACvB,KAAK,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GACzB,MAAM,GAAG,IAAI,CAYf;AAED,eAAO,MAAM,mBAAmB,EAAE,aAAa,CAAC,oBAAoB,CAOnE,CAAC"}

package/dist/src/pipeline/phases/import-resolver.js

@@ -1,4 +1,4 @@
-import { existsSync, readFileSync, readdirSync } from 'fs';
+import { readFileSync, readdirSync } from 'fs';
 import { join, resolve } from 'path';
 function globWorkspacePattern(repoPath, pattern) {
     if (!pattern.includes('*')) {
@@ -6,8 +6,7 @@ function globWorkspacePattern(repoPath, pattern) {
     }
     const [base] = pattern.split('/*');
     const baseDir = join(repoPath, base ?? '');
-    if (!existsSync(baseDir))
-        return [];
+    // Skip existsSync — readdirSync will throw ENOENT which the catch already handles.
     try {
         return readdirSync(baseDir, { withFileTypes: true })
             .filter(d => d.isDirectory())
@@ -19,8 +18,6 @@ function globWorkspacePattern(repoPath, pattern) {
 }
 export function detectWorkspacePackages(repoPath) {
     const pkgPath = join(repoPath, 'package.json');
-    if (!existsSync(pkgPath))
-        return [];
     let workspaceGlobs = [];
     try {
         const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
@@ -38,9 +35,8 @@ export function detectWorkspacePackages(repoPath) {
         const dirs = globWorkspacePattern(repoPath, glob);
         for (const dir of dirs) {
             const subPkgPath = join(dir, 'package.json');
-            if (!existsSync(subPkgPath))
-                continue;
             try {
+                // existsSync guard removed — readFileSync throws ENOENT which the catch handles.
                 const subPkg = JSON.parse(readFileSync(subPkgPath, 'utf8'));
                 if (subPkg.name) {
                     result.push({ name: subPkg.name, path: resolve(dir) });
@@ -59,6 +55,37 @@ export function resolveWorkspaceImport(importSpecifier, packages) {
     }
     return null;
 }
+/**
+ * Build a Map<packageName, packagePath> index from a WorkspacePackage array.
+ * Use this when resolveWorkspaceImport will be called many times (e.g. per import
+ * statement across a whole repo) to reduce resolution cost from O(N*I) to O(N+I).
+ */
+export function buildPackageIndex(packages) {
+    const index = new Map();
+    for (const pkg of packages) {
+        index.set(pkg.name, pkg.path);
+    }
+    return index;
+}
+/**
+ * O(1) workspace import resolution using a pre-built package index.
+ * Falls back to prefix scan only for sub-path imports (e.g. `pkg/subpath`).
+ */
+export function resolveWorkspaceImportFromIndex(importSpecifier, index) {
+    // Exact match: O(1)
+    const exact = index.get(importSpecifier);
+    if (exact !== undefined)
+        return exact;
+    // Sub-path import: find the matching package name prefix
+    const slash = importSpecifier.indexOf('/', importSpecifier.startsWith('@') ? importSpecifier.indexOf('/') + 1 : 0);
+    if (slash !== -1) {
+        const pkgName = importSpecifier.slice(0, slash);
+        const path = index.get(pkgName);
+        if (path !== undefined)
+            return path;
+    }
+    return null;
+}
 export const importResolverPhase = {
     name: 'import-resolver',
     deps: ['cross-file'],

package/dist/src/pipeline/phases/import-resolver.js.map

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+{"version":3,"file":"import-resolver.js","sourceRoot":"","sources":["../../../../src/pipeline/phases/import-resolver.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,IAAI,CAAC;AAC/C,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAarC,SAAS,oBAAoB,CAAC,QAAgB,EAAE,OAAe;IAC7D,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QAC3B,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAC;IACnC,CAAC;IACD,MAAM,CAAC,IAAI,CAAC,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACnC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,EAAE,IAAI,IAAI,EAAE,CAAC,CAAC;IAC3C,mFAAmF;IACnF,IAAI,CAAC;QACH,OAAO,WAAW,CAAC,OAAO,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC;aACjD,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;aAC5B,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IACrC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,QAAgB;IACtD,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,EAAE,cAAc,CAAC,CAAC;IAC/C,IAAI,cAAc,GAAa,EAAE,CAAC;IAClC,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC,CAAC;QACtD,MAAM,EAAE,GAAG,GAAG,CAAC,UAAU,CAAC;QAC1B,IAAI,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;YAAE,cAAc,GAAG,EAAE,CAAC;aACtC,IAAI,EAAE,IAAI,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,CAAC;YAAE,cAAc,GAAG,EAAE,CAAC,QAAQ,CAAC;IAC1E,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;IAED,MAAM,MAAM,GAAuB,EAAE,CAAC;IACtC,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;QAClC,MAAM,IAAI,GAAG,oBAAoB,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;QAClD,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;YACvB,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,cAAc,CAAC,CAAC;YAC7C,IAAI,CAAC;gBACH,iFAAiF;gBACjF,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC;gBAC5D,IAAI,MAAM,CAAC,IAAI,EAAE,CAAC;oBAChB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;gBACzD,CAAC;YACH,CAAC;YAAC,MAAM,CAAC,CAAC,UAAU,CAAC,CAAC;QACxB,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,sBAAsB,CACpC,eAAuB,EACvB,QAA4B;IAE5B,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC3B,IAAI,eAAe,KAAK,GAAG,CAAC,IAAI,IAAI,eAAe,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;YAC/E,OAAO,GAAG,CAAC,IAAI,CAAC;QAClB,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,iBAAiB,CAAC,QAA4B;IAC5D,MAAM,KAAK,GAAG,IAAI,GAAG,EAAkB,CAAC;IACxC,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC3B,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;IAChC,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,+BAA+B,CAC7C,eAAuB,EACvB,KAA0B;IAE1B,oBAAoB;IACpB,MAAM,KAAK,GAAG,KAAK,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;IACzC,IAAI,KAAK,KAAK,SAAS;QAAE,OAAO,KAAK,CAAC;IACtC,yDAAyD;IACzD,MAAM,KAAK,GAAG,eAAe,CAAC,OAAO,CAAC,GAAG,EAAE,eAAe,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACnH,IAAI,KAAK,KAAK,CAAC,CAAC,EAAE,CAAC;QACjB,MAAM,OAAO,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QAChD,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAChC,IAAI,IAAI,KAAK,SAAS;YAAE,OAAO,IAAI,CAAC;IACtC,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAwC;IACtE,IAAI,EAAE,iBAAiB;IACvB,IAAI,EAAE,CAAC,YAAY,CAAC;IACpB,KAAK,CAAC,OAAO,CAAC,GAAoB;QAChC,MAAM,iBAAiB,GAAG,uBAAuB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;QAChE,OAAO,EAAE,iBAAiB,EAAE,aAAa,EAAE,CAAC,EAAE,CAAC;IACjD,CAAC;CACF,CAAC"}

package/dist/src/pipeline/phases/leiden.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"leiden.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/leiden.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,KAAK,MAAM,YAAY,CAAC;AAEpC;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,GAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAiD7F"}
+{"version":3,"file":"leiden.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/leiden.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,KAAK,MAAM,YAAY,CAAC;AAEpC;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,GAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAwD7F"}

package/dist/src/pipeline/phases/leiden.js

@@ -22,36 +22,44 @@ export function leiden(graph, _options = {}) {
     }
     // Phase 1: Louvain with deterministic settings
     const communities = louvain(graph, { randomWalk: false });
-    // Phase 2: Refinement — merge singletons into their largest neighbor's community
+    // Phase 2: Refinement — merge singletons into their largest neighbor's community.
+    // Single pass over Object.entries to build both communitySizes and the singletonNodes Set,
+    // avoiding a separate Object.values scan. The singletonNodes Set enables O(1) skip in the
+    // refinement loop below instead of a map.get(commId) <= 1 test per node.
     const communitySizes = new Map();
     for (const comm of Object.values(communities)) {
         communitySizes.set(comm, (communitySizes.get(comm) ?? 0) + 1);
     }
+    const singletonNodes = new Set();
+    for (const [nodeId, commId] of Object.entries(communities)) {
+        if ((communitySizes.get(commId) ?? 0) <= 1)
+            singletonNodes.add(nodeId);
+    }
     // Refinement: merge singletons into their largest neighbor's community.
     // Pass 1: update communitySizes eagerly (so adjacent singletons see each other's moves
     //         and avoid mutual-swap cycles), collect community writes into `pending`.
     // Pass 2: apply community writes — keeps the community map consistent at all times.
     const pending = new Map();
     for (const [nodeId, commId] of Object.entries(communities)) {
-        if ((communitySizes.get(commId) ?? 0) <= 1) {
-            let bestComm = commId;
-            let bestSize = 0;
-            graph.forEachNeighbor(nodeId, (neighbor) => {
-                const neighborComm = communities[neighbor];
-                if (neighborComm === undefined)
-                    return;
-                const size = communitySizes.get(neighborComm) ?? 0;
-                if (size > bestSize) {
-                    bestSize = size;
-                    bestComm = neighborComm;
-                }
-            });
-            if (bestComm !== commId) {
-                // Update sizes eagerly so subsequent singletons see the correct community sizes
-                communitySizes.set(commId, (communitySizes.get(commId) ?? 1) - 1);
-                communitySizes.set(bestComm, (communitySizes.get(bestComm) ?? 0) + 1);
-                pending.set(nodeId, bestComm);
+        if (!singletonNodes.has(nodeId))
+            continue; // O(1) skip for non-singletons
+        let bestComm = commId;
+        let bestSize = 0;
+        graph.forEachNeighbor(nodeId, (neighbor) => {
+            const neighborComm = communities[neighbor];
+            if (neighborComm === undefined)
+                return;
+            const size = communitySizes.get(neighborComm) ?? 0;
+            if (size > bestSize) {
+                bestSize = size;
+                bestComm = neighborComm;
             }
+        });
+        if (bestComm !== commId) {
+            // Update sizes eagerly so subsequent singletons see the correct community sizes
+            communitySizes.set(commId, (communitySizes.get(commId) ?? 1) - 1);
+            communitySizes.set(bestComm, (communitySizes.get(bestComm) ?? 0) + 1);
+            pending.set(nodeId, bestComm);
         }
     }
     // Apply deferred community writes

package/dist/src/pipeline/phases/leiden.js.map

@@ -1 +1 @@
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+{"version":3,"file":"leiden.js","sourceRoot":"","sources":["../../../../src/pipeline/phases/leiden.ts"],"names":[],"mappings":"AAAA,OAAO,OAAO,MAAM,gCAAgC,CAAC;AAGrD;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,UAAU,MAAM,CAAC,KAAY,EAAE,WAA8B,EAAE;IACnE,IAAI,KAAK,CAAC,KAAK,KAAK,CAAC,EAAE,CAAC;QACtB,OAAO,EAAE,CAAC;IACZ,CAAC;IAED,+CAA+C;IAC/C,MAAM,WAAW,GAA2B,OAAO,CAAC,KAAK,EAAE,EAAE,UAAU,EAAE,KAAK,EAAE,CAAC,CAAC;IAElF,kFAAkF;IAClF,2FAA2F;IAC3F,0FAA0F;IAC1F,yEAAyE;IACzE,MAAM,cAAc,GAAG,IAAI,GAAG,EAAkB,CAAC;IACjD,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,EAAE,CAAC;QAC9C,cAAc,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAChE,CAAC;IACD,MAAM,cAAc,GAAG,IAAI,GAAG,EAAU,CAAC;IACzC,KAAK,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,CAAC;QAC3D,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC;YAAE,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACzE,CAAC;IAED,wEAAwE;IACxE,uFAAuF;IACvF,kFAAkF;IAClF,oFAAoF;IACpF,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,KAAK,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,CAAC;QAC3D,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC;YAAE,SAAS,CAAC,+BAA+B;QAE1E,IAAI,QAAQ,GAAG,MAAM,CAAC;QACtB,IAAI,QAAQ,GAAG,CAAC,CAAC;QAEjB,KAAK,CAAC,eAAe,CAAC,MAAM,EAAE,CAAC,QAAgB,EAAE,EAAE;YACjD,MAAM,YAAY,GAAG,WAAW,CAAC,QAAQ,CAAC,CAAC;YAC3C,IAAI,YAAY,KAAK,SAAS;gBAAE,OAAO;YACvC,MAAM,IAAI,GAAG,cAAc,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC;YACnD,IAAI,IAAI,GAAG,QAAQ,EAAE,CAAC;gBACpB,QAAQ,GAAG,IAAI,CAAC;gBAChB,QAAQ,GAAG,YAAY,CAAC;YAC1B,CAAC;QACH,CAAC,CAAC,CAAC;QAEH,IAAI,QAAQ,KAAK,MAAM,EAAE,CAAC;YACxB,gFAAgF;YAChF,cAAc,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;YAClE,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;YACtE,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;QAChC,CAAC;IACH,CAAC;IAED,kCAAkC;IAClC,KAAK,MAAM,CAAC,MAAM,EAAE,QAAQ,CAAC,IAAI,OAAO,EAAE,CAAC;QACzC,WAAW,CAAC,MAAM,CAAC,GAAG,QAAQ,CAAC;IACjC,CAAC;IAED,OAAO,WAAW,CAAC;AACrB,CAAC"}

package/dist/src/pipeline/phases/markdown.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"markdown.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/markdown.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAUnE,MAAM,WAAW,cAAc;IAC7B,aAAa,EAAE,aAAa,EAAE,CAAC;IAC/B,eAAe,EAAE,aAAa,EAAE,CAAC;CAClC;AAED,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CAkFvD,CAAC"}
+{"version":3,"file":"markdown.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/markdown.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAYnE,MAAM,WAAW,cAAc;IAC7B,aAAa,EAAE,aAAa,EAAE,CAAC;IAC/B,eAAe,EAAE,aAAa,EAAE,CAAC;CAClC;AAED,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CAqFvD,CAAC"}

package/dist/src/pipeline/phases/markdown.js

@@ -6,6 +6,8 @@ import { insertEdges } from '../../storage/edge-store.js';
 const MARKDOWN_EXTENSIONS = new Set(['.md', '.mdx']);
 // Inline code span: `identifier`
 const INLINE_CODE_RE = /`([^`]+)`/g;
+// Module-level constant: compiled once per process, not per isIdentifier() call.
+const IDENTIFIER_RE = /^[A-Za-z_$][A-Za-z0-9_$.-]*$/;
 export const markdownPhase = {
     name: 'markdown',
     // Must run after parse so symbols are already in the DB for name lookup.
@@ -13,6 +15,8 @@ export const markdownPhase = {
     // Runs before communities so REFERENCES edges are visible to graph analyses.
     deps: ['parse', 'structure'],
     async execute(ctx, deps) {
+        if (ctx.options.codeOnly)
+            return { documentNodes: [], referencesEdges: [] };
         const { fileNodes } = deps.get('structure');
         const documentNodes = [];
         const referencesEdges = [];
@@ -50,15 +54,16 @@ export const markdownPhase = {
             // Extract inline code spans and match against symbol names in the DB
             if (ctx.db) {
                 const spans = extractCodeSpans(source);
+                // Hoist prepared statement outside the span loop — avoids re-compiling the
+                // SQL query for every identifier in every markdown file (N+1 preparation).
+                const symbolLookup = ctx.db.prepare(`SELECT id FROM nodes WHERE name = ?
+           AND label NOT IN ('File', 'Folder', 'Document')`);
                 for (const span of spans) {
                     // Only match single-word identifiers (not shell commands, paths, etc.)
                     if (!isIdentifier(span))
                         continue;
                     // Exact name match, excluding structural nodes to avoid matching file names
-                    const rows = ctx.db
-                        .prepare(`SELECT id FROM nodes WHERE name = ?
-               AND label NOT IN ('File', 'Folder', 'Document')`)
-                        .all(span);
+                    const rows = symbolLookup.all(span);
                     if (rows.length === 1) {
                         const edgeId = makeId(docId, rows[0].id, 'references');
                         referencesEdges.push({
@@ -93,6 +98,6 @@ function extractCodeSpans(source) {
 }
 /** Accept only simple identifiers — letters, digits, underscores, hyphens, dots (for namespaced names). */
 function isIdentifier(span) {
-    return /^[A-Za-z_$][A-Za-z0-9_$.-]*$/.test(span);
+    return IDENTIFIER_RE.test(span);
 }
 //# sourceMappingURL=markdown.js.map

package/dist/src/pipeline/phases/markdown.js.map

@@ -1 +1 @@
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+{"version":3,"file":"markdown.js","sourceRoot":"","sources":["../../../../src/pipeline/phases/markdown.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,IAAI,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAY,MAAM,MAAM,CAAC;AAGnD,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AACrD,OAAO,EAAE,WAAW,EAAE,MAAM,6BAA6B,CAAC;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,6BAA6B,CAAC;AAG1D,MAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC;AACrD,iCAAiC;AACjC,MAAM,cAAc,GAAG,YAAY,CAAC;AACpC,iFAAiF;AACjF,MAAM,aAAa,GAAG,8BAA8B,CAAC;AAOrD,MAAM,CAAC,MAAM,aAAa,GAAkC;IAC1D,IAAI,EAAE,UAAU;IAChB,yEAAyE;IACzE,2DAA2D;IAC3D,6EAA6E;IAC7E,IAAI,EAAE,CAAC,OAAO,EAAE,WAAW,CAAC;IAC5B,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,IAAI;QACrB,IAAI,GAAG,CAAC,OAAO,CAAC,QAAQ;YAAE,OAAO,EAAE,aAAa,EAAE,EAAE,EAAE,eAAe,EAAE,EAAE,EAAE,CAAC;QAC5E,MAAM,EAAE,SAAS,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,WAAW,CAAoB,CAAC;QAC/D,MAAM,aAAa,GAAoB,EAAE,CAAC;QAC1C,MAAM,eAAe,GAAoB,EAAE,CAAC;QAE5C,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE;YACpC,MAAM,GAAG,GAAG,OAAO,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC;YAC3C,OAAO,mBAAmB,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QACtC,CAAC,CAAC,CAAC;QAEH,KAAK,MAAM,QAAQ,IAAI,OAAO,EAAE,CAAC;YAC/B,gEAAgE;YAChE,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC;YACxC,MAAM,OAAO,GAAG,GAAG,GAAG,CAAC,QAAQ,IAAI,OAAO,EAAE,CAAC;YAE7C,IAAI,MAAc,CAAC;YACnB,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,CAAC;gBAC/B,IAAI,IAAI,CAAC,IAAI,GAAG,GAAG,CAAC,OAAO,CAAC,gBAAgB;oBAAE,SAAS;gBACvD,MAAM,GAAG,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC1C,CAAC;YAAC,MAAM,CAAC;gBAAC,SAAS;YAAC,CAAC;YAErB,MAAM,cAAc,GAAG,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC;YAClE,yEAAyE;YACzE,MAAM,KAAK,GAAG,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,KAAK,CAAC,CAAC;YAEzD,MAAM,OAAO,GAAkB;gBAC7B,EAAE,EAAE,KAAK;gBACT,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,cAAc;gBACpB,SAAS,EAAE,WAAW,CAAC,cAAc,CAAC;gBACtC,QAAQ,EAAE,OAAO;gBACjB,UAAU,EAAE,KAAK;gBACjB,QAAQ,EAAE,UAAU;aACrB,CAAC;YACF,aAAa,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAE5B,qEAAqE;YACrE,IAAI,GAAG,CAAC,EAAE,EAAE,CAAC;gBACX,MAAM,KAAK,GAAG,gBAAgB,CAAC,MAAM,CAAC,CAAC;gBACvC,2EAA2E;gBAC3E,2EAA2E;gBAC3E,MAAM,YAAY,GAAG,GAAG,CAAC,EAAE,CAAC,OAAO,CACjC;2DACiD,CAClD,CAAC;gBAEF,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;oBACzB,uEAAuE;oBACvE,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC;wBAAE,SAAS;oBAElC,4EAA4E;oBAC5E,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,IAAI,CAAqB,CAAC;oBAExD,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;wBACtB,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,YAAY,CAAC,CAAC;wBACvD,eAAe,CAAC,IAAI,CAAC;4BACnB,EAAE,EAAE,MAAM;4BACV,QAAQ,EAAE,KAAK;4BACf,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE;4BACpB,QAAQ,EAAE,YAAY;4BACtB,UAAU,EAAE,UAAU;4BACtB,0EAA0E;4BAC1E,gFAAgF;4BAChF,eAAe,EAAE,GAAG;yBACrB,CAAC,CAAC;oBACL,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QAED,IAAI,GAAG,CAAC,EAAE,EAAE,CAAC;YACX,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,aAAa,CAAC,CAAC;YACnC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,eAAe,CAAC,CAAC;QACvC,CAAC;QAED,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,CAAC;IAC5C,CAAC;CACF,CAAC;AAEF,SAAS,gBAAgB,CAAC,MAAc;IACtC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,IAAI,KAA6B,CAAC;IAClC,MAAM,EAAE,GAAG,IAAI,MAAM,CAAC,cAAc,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC;IAClD,OAAO,CAAC,KAAK,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC1C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;IAC9B,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,2GAA2G;AAC3G,SAAS,YAAY,CAAC,IAAY;IAChC,OAAO,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAClC,CAAC"}

package/dist/src/pipeline/phases/pdf-parse.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pdf-parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/pdf-parse.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,gBAAgB,CAAC;AAWnE,MAAM,WAAW,cAAc;IAC7B,YAAY,EAAE,aAAa,EAAE,CAAC;IAC9B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAqBD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA6EvD,CAAC"}
+{"version":3,"file":"pdf-parse.d.ts","sourceRoot":"","sources":["../../../../src/pipeline/phases/pdf-parse.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,aAAa,EAAmB,MAAM,aAAa,CAAC;AAClE,OAAO,KAAK,EAAE,aAAa,EAAiB,MAAM,gBAAgB,CAAC;AAWnE,MAAM,WAAW,cAAc;IAC7B,YAAY,EAAE,aAAa,EAAE,CAAC;IAC9B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAqBD,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,cAAc,CA8FvD,CAAC"}

package/dist/src/pipeline/phases/pdf-parse.js

@@ -108,10 +108,25 @@ export const pdfParsePhase = {
                 });
             }
         }
-        if (sectionNodes.length > 0)
-            insertNodes(ctx.db, sectionNodes);
-        if (allEdges.length > 0)
+        if (sectionNodes.length > 0) {
+            // File nodes are not persisted by structure/parse phases for non-code files —
+            // insert them here before edges to satisfy the FK constraint.
+            const seenFileIds = new Set();
+            const fileNodes = [];
+            for (const edge of allEdges) {
+                if (!seenFileIds.has(edge.sourceId)) {
+                    seenFileIds.add(edge.sourceId);
+                    const relPath = sectionNodes.find(n => n.id === edge.targetId)?.filePath ?? '';
+                    fileNodes.push({
+                        id: edge.sourceId, label: 'File',
+                        name: basename(relPath), normLabel: toNormLabel(basename(relPath)),
+                        filePath: relPath, isExported: false,
+                    });
+                }
+            }
+            insertNodes(ctx.db, [...fileNodes, ...sectionNodes]);
             insertEdges(ctx.db, allEdges);
+        }
         ctx.onProgress?.({ phase: 'pdf-parse', message: `Parsed ${pdfPaths.length} PDF files → ${sectionNodes.length} chunks` });
         return { sectionNodes, pdfFiles: pdfPaths.length };
     },

package/dist/src/pipeline/phases/pdf-parse.js.map

@@ -1 +1 @@
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package/dist/src/pipeline/phases/processes.d.ts.map

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