@monoes/monograph 1.2.0 → 1.2.1

package/dist/src/mcp-tools/detect-changes.js.map

@@ -1 +1 @@
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+{"version":3,"file":"detect-changes.js","sourceRoot":"","sources":["../../../src/mcp-tools/detect-changes.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAa1C,kFAAkF;AAElF,MAAM,SAAS,GAAG,GAAG,CAAC,CAAI,4DAA4D;AACtF,MAAM,UAAU,GAAG,SAAS,CAAC,CAAC,kCAAkC;AAEhE,MAAM,UAAU,sBAAsB,CACpC,EAAqB,EACrB,KAAsD,EACtD,QAAgB;IAEhB,MAAM,SAAS,GAAG,KAAK,CAAC,UAAU,IAAI,MAAM,CAAC;IAC7C,qEAAqE;IACrE,IAAI,CAAC,gCAAgC,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC;QACtD,OAAO,EAAE,YAAY,EAAE,EAAE,EAAE,eAAe,EAAE,EAAE,EAAE,iBAAiB,EAAE,EAAE,EAAE,KAAK,EAAE,wBAAwB,SAAS,EAAE,EAAE,CAAC;IACtH,CAAC;IACD,MAAM,UAAU,GAAG,SAAS,CAAC;IAC7B,MAAM,YAAY,GAAG,KAAK,CAAC,YAAY,IAAI,IAAI,CAAC;IAEhD,IAAI,YAAsB,CAAC;IAE3B,IAAI,CAAC;QACH,0EAA0E;QAC1E,MAAM,MAAM,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,UAAU,SAAS,CAAC,EAAE;YAC/E,GAAG,EAAE,QAAQ;YACb,QAAQ,EAAE,OAAO;YACjB,SAAS,EAAE,UAAU;SACtB,CAAC,CAAC;QACH,IAAI,MAAM,CAAC,KAAK;YAAE,MAAM,MAAM,CAAC,KAAK,CAAC;QACrC,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC;YAAE,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,IAAI,cAAc,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC;QACzF,MAAM,MAAM,GAAG,CAAC,MAAM,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,IAAI,EAAE,CAAC;QAEjE,YAAY,GAAG,MAAM;aAClB,KAAK,CAAC,IAAI,CAAC;aACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;aAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;aACzB,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC,CAAC,sCAAsC;IAChE,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,OAAO,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACjE,OAAO,EAAE,YAAY,EAAE,EAAE,EAAE,eAAe,EAAE,EAAE,EAAE,iBAAiB,EAAE,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC;IAC1F,CAAC;IAED,qCAAqC;IACrC,IAAI,CAAC,YAAY,EAAE,CAAC;QAClB,YAAY,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,iBAAiB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACxE,CAAC;IAED,IAAI,YAAY,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC9B,OAAO,EAAE,YAAY,EAAE,EAAE,EAAE,eAAe,EAAE,EAAE,EAAE,iBAAiB,EAAE,EAAE,EAAE,CAAC;IAC1E,CAAC;IAED,0DAA0D;IAC1D,IAAI,eAAe,GAA6D,EAAE,CAAC;IACnF,IAAI,iBAAiB,GAAa,EAAE,CAAC;IAErC,IAAI,CAAC;QACH,iEAAiE;QACjE,MAAM,KAAK,GAAG,EAAE,CAAC;QACjB,MAAM,OAAO,GAA0E,EAAE,CAAC;QAC1F,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,IAAI,KAAK,EAAE,CAAC;YACpD,MAAM,KAAK,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC;YAC/C,MAAM,YAAY,GAAG,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACpD,MAAM,IAAI,GAAG,EAAE;iBACZ,OAAO,CAAC,oEAAoE,YAAY,GAAG,CAAC;iBAC5F,GAAG,CAAC,GAAG,KAAK,CAA0E,CAAC;YAC1F,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,CAAC;QACxB,CAAC;QAED,eAAe,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;QAC9F,iBAAiB,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;IAC7C,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,OAAO,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACjE,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,EAAE,EAAE,iBAAiB,EAAE,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC;IACtF,CAAC;IAED,mEAAmE;IACnE,yCAAyC;IACzC,IAAI,iBAAiB,GAAwC,EAAE,CAAC;IAEhE,IAAI,iBAAiB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACjC,IAAI,CAAC;YACH,kDAAkD;YAClD,MAAM,KAAK,GAAG,EAAE,CAAC;YACjB,MAAM,UAAU,GAAG,IAAI,GAAG,EAAkB,CAAC;YAC7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,iBAAiB,CAAC,MAAM,EAAE,CAAC,IAAI,KAAK,EAAE,CAAC;gBACzD,MAAM,KAAK,GAAG,iBAAiB,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC;gBACpD,MAAM,YAAY,GAAG,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;gBACpD,MAAM,WAAW,GAAG,EAAE;qBACnB,OAAO,CACN;;wEAE4D,YAAY,GAAG,CAC5E;qBACA,GAAG,CAAC,GAAG,KAAK,CAAwC,CAAC;gBACxD,KAAK,MAAM,GAAG,IAAI,WAAW;oBAAE,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;YAClE,CAAC;YACD,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;QAC3F,CAAC;QAAC,MAAM,CAAC;YACP,iCAAiC;QACnC,CAAC;IACH,CAAC;IAED,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,iBAAiB,EAAE,CAAC;AAC9D,CAAC"}

package/dist/src/mcp-tools/explain.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"explain.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/explain.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAkBjD,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,aAAa,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,MAAM,GAAG,aAAa,CAoC9E"}
+{"version":3,"file":"explain.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/explain.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAkBjD,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,aAAa,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,eAAe,EAAE,MAAM,CAAC;CACzB;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,MAAM,GAAG,aAAa,CAuC9E"}

package/dist/src/mcp-tools/explain.js

@@ -23,7 +23,10 @@ export function explainNode(db, name) {
     // Get inbound connections
     const inRows = db.prepare(`SELECT n.name, e.relation FROM nodes n JOIN edges e ON n.id = e.source_id WHERE e.target_id = ? LIMIT 10`).all(node.id);
     const connectionCount = outRows.length + inRows.length;
-    const fileLine = node.filePath ? ` defined in \`${node.filePath}\`` : '';
+    const fileRef = node.filePath
+        ? (node.startLine != null ? `${node.filePath}:${node.startLine}` : node.filePath)
+        : null;
+    const fileLine = fileRef ? ` defined in \`${fileRef}\`` : '';
     let explanation = `**${node.name}** is a ${node.label}${fileLine}.`;
     if (outRows.length > 0) {
         const outList = outRows.map(r => `\`${r.name}\` (${r.relation})`).join(', ');

package/dist/src/mcp-tools/explain.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/graph-query.d.ts

@@ -3,6 +3,8 @@ import type { MonographNode } from '../types.js';
 export interface GraphQueryInput {
     query: string;
     mode?: 'bfs' | 'dfs';
+    /** Direction of edge traversal. 'both' includes incoming edges (callers) and outgoing (callees). Default: 'out' */
+    direction?: 'out' | 'in' | 'both';
     tokenBudget?: number;
     depth?: number;
 }

package/dist/src/mcp-tools/graph-query.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-query.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/graph-query.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAkBjD,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;IACrB,mHAAmH;IACnH,SAAS,CAAC,EAAE,KAAK,GAAG,IAAI,GAAG,MAAM,CAAC;IAClC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,gBAAgB;IAC/B,KAAK,EAAE,aAAa,EAAE,CAAC;IACvB,IAAI,EAAE,KAAK,GAAG,KAAK,CAAC;IACpB,SAAS,EAAE,OAAO,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;CACvB;AAMD,wBAAgB,UAAU,CACxB,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE,eAAe,GACrB,gBAAgB,CAqFlB"}

package/dist/src/mcp-tools/graph-query.js

@@ -18,6 +18,7 @@ function estimateTokens(nodes) {
 }
 export function queryGraph(db, input) {
     const mode = input.mode ?? 'bfs';
+    const direction = input.direction ?? 'out';
     const tokenBudget = input.tokenBudget ?? 2000;
     const maxDepth = input.depth ?? 3;
     // Find seed nodes matching the query
@@ -39,13 +40,29 @@ export function queryGraph(db, input) {
     if (!truncated) {
         // BFS or DFS expansion
         const frontier = seeds.map(s => ({ id: s.id, depth: 0 }));
-        const edgeStmt = db.prepare(`SELECT n.* FROM nodes n JOIN edges e ON n.id = e.target_id WHERE e.source_id = ? LIMIT 20`);
+        // Prepare edge traversal statements for each direction.
+        // 'out' follows outgoing edges (what this node calls/imports/uses).
+        // 'in' follows incoming edges (what calls/imports/uses this node).
+        // 'both' follows both directions — needed for full context (callers + callees).
+        const outEdgeStmt = db.prepare(`SELECT n.* FROM nodes n JOIN edges e ON n.id = e.target_id WHERE e.source_id = ? LIMIT 20`);
+        const inEdgeStmt = db.prepare(`SELECT n.* FROM nodes n JOIN edges e ON n.id = e.source_id WHERE e.target_id = ? LIMIT 20`);
+        const getNeighbors = (id) => {
+            if (direction === 'out')
+                return outEdgeStmt.all(id);
+            if (direction === 'in')
+                return inEdgeStmt.all(id);
+            // 'both': union of outgoing and incoming, deduplicated by id
+            const outRows = outEdgeStmt.all(id);
+            const inRows = inEdgeStmt.all(id);
+            const seen = new Set(outRows.map(r => r['id']));
+            return [...outRows, ...inRows.filter(r => !seen.has(r['id']))];
+        };
         if (mode === 'bfs') {
             while (frontier.length > 0 && !truncated) {
                 const { id, depth } = frontier.shift();
                 if (depth >= maxDepth)
                     continue;
-                const neighbors = edgeStmt.all(id);
+                const neighbors = getNeighbors(id);
                 for (const row of neighbors) {
                     const node = rowToNode(row);
                     if (visited.has(node.id))
@@ -68,7 +85,7 @@ export function queryGraph(db, input) {
                 const { id, depth } = stack.pop();
                 if (depth >= maxDepth)
                     continue;
-                const neighbors = edgeStmt.all(id);
+                const neighbors = getNeighbors(id);
                 for (let i = neighbors.length - 1; i >= 0; i--) {
                     const node = rowToNode(neighbors[i]);
                     if (visited.has(node.id))

package/dist/src/mcp-tools/graph-query.js.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-query.js","sourceRoot":"","sources":["../../../src/mcp-tools/graph-query.ts"],"names":[],"mappings":"AAGA,SAAS,SAAS,CAAC,GAA4B;IAC7C,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,IAAI,CAAW;QACvB,KAAK,EAAE,GAAG,CAAC,OAAO,CAA2B;QAC7C,IAAI,EAAE,GAAG,CAAC,MAAM,CAAW;QAC3B,SAAS,EAAG,GAAG,CAAC,YAAY,CAAY,IAAI,EAAE;QAC9C,QAAQ,EAAE,GAAG,CAAC,WAAW,CAAuB;QAChD,SAAS,EAAE,GAAG,CAAC,YAAY,CAAuB;QAClD,OAAO,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC9C,WAAW,EAAE,GAAG,CAAC,cAAc,CAAuB;QACtD,UAAU,EAAG,GAAG,CAAC,aAAa,CAAY,KAAK,CAAC;QAChD,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC/C,UAAU,EAAE,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAW,CAAC,CAAC,CAAC,CAAC,SAAS;KACpF,CAAC;AACJ,CAAC;AAkBD,SAAS,cAAc,CAAC,KAAsB;IAC5C,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,MAAM,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC;AAC3F,CAAC;AAED,MAAM,UAAU,UAAU,CACxB,EAAqB,EACrB,KAAsB;IAEtB,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,IAAI,KAAK,CAAC;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,IAAI,KAAK,CAAC;IAC3C,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,IAAI,IAAI,CAAC;IAC9C,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,IAAI,CAAC,CAAC;IAElC,qCAAqC;IACrC,MAAM,QAAQ,GAAG,EAAE,CAAC,OAAO,CACzB,gEAAgE,CACjE,CAAC,GAAG,CAAC,IAAI,KAAK,CAAC,KAAK,GAAG,EAAE,IAAI,KAAK,CAAC,KAAK,GAAG,CAA8B,CAAC;IAE3E,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IACtC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAyB,CAAC;IACjD,MAAM,MAAM,GAAoB,EAAE,CAAC;IACnC,IAAI,aAAa,GAAG,CAAC,CAAC;IACtB,IAAI,SAAS,GAAG,KAAK,CAAC;IAEtB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;QAC3B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClB,aAAa,IAAI,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;QACxC,IAAI,aAAa,GAAG,WAAW,EAAE,CAAC;YAAC,SAAS,GAAG,IAAI,CAAC;YAAC,MAAM;QAAC,CAAC;IAC/D,CAAC;IAED,IAAI,CAAC,SAAS,EAAE,CAAC;QACf,uBAAuB;QACvB,MAAM,QAAQ,GAAyC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAEhG,wDAAwD;QACxD,oEAAoE;QACpE,mEAAmE;QACnE,gFAAgF;QAChF,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAC5B,2FAA2F,CAC5F,CAAC;QACF,MAAM,UAAU,GAAG,EAAE,CAAC,OAAO,CAC3B,2FAA2F,CAC5F,CAAC;QACF,MAAM,YAAY,GAAG,CAAC,EAAU,EAA6B,EAAE;YAC7D,IAAI,SAAS,KAAK,KAAK;gBAAE,OAAO,WAAW,CAAC,GAAG,CAAC,EAAE,CAA8B,CAAC;YACjF,IAAI,SAAS,KAAK,IAAI;gBAAE,OAAO,UAAU,CAAC,GAAG,CAAC,EAAE,CAA8B,CAAC;YAC/E,6DAA6D;YAC7D,MAAM,OAAO,GAAG,WAAW,CAAC,GAAG,CAAC,EAAE,CAA8B,CAAC;YACjE,MAAM,MAAM,GAAG,UAAU,CAAC,GAAG,CAAC,EAAE,CAA8B,CAAC;YAC/D,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAW,CAAC,CAAC,CAAC;YAC1D,OAAO,CAAC,GAAG,OAAO,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAW,CAAC,CAAC,CAAC,CAAC;QAC3E,CAAC,CAAC;QAGF,IAAI,IAAI,KAAK,KAAK,EAAE,CAAC;YACnB,OAAO,QAAQ,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC;gBACzC,MAAM,EAAE,EAAE,EAAE,KAAK,EAAE,GAAG,QAAQ,CAAC,KAAK,EAAG,CAAC;gBACxC,IAAI,KAAK,IAAI,QAAQ;oBAAE,SAAS;gBAChC,MAAM,SAAS,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;gBACnC,KAAK,MAAM,GAAG,IAAI,SAAS,EAAE,CAAC;oBAC5B,MAAM,IAAI,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;oBAC5B,IAAI,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;wBAAE,SAAS;oBACnC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;oBAC3B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;oBAClB,aAAa,IAAI,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;oBACxC,IAAI,aAAa,GAAG,WAAW,EAAE,CAAC;wBAAC,SAAS,GAAG,IAAI,CAAC;wBAAC,MAAM;oBAAC,CAAC;oBAC7D,QAAQ,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,GAAG,CAAC,EAAE,CAAC,CAAC;gBACnD,CAAC;YACH,CAAC;QACH,CAAC;aAAM,CAAC;YACN,iBAAiB;YACjB,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,CAAC,OAAO,EAAE,CAAC;YACtC,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC;gBACtC,MAAM,EAAE,EAAE,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,GAAG,EAAG,CAAC;gBACnC,IAAI,KAAK,IAAI,QAAQ;oBAAE,SAAS;gBAChC,MAAM,SAAS,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;gBACnC,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC/C,MAAM,IAAI,GAAG,SAAS,CAAC,SAAS,CAAC,CAAC,CAAE,CAAC,CAAC;oBACtC,IAAI,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;wBAAE,SAAS;oBACnC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC;oBAC3B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;oBAClB,aAAa,IAAI,cAAc,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;oBACxC,IAAI,aAAa,GAAG,WAAW,EAAE,CAAC;wBAAC,SAAS,GAAG,IAAI,CAAC;wBAAC,MAAM;oBAAC,CAAC;oBAC7D,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,GAAG,CAAC,EAAE,CAAC,CAAC;gBAChD,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,SAAS,EAAE,aAAa,EAAE,CAAC;AAC3D,CAAC"}

package/dist/src/mcp-tools/group-list.d.ts

@@ -8,6 +8,7 @@ export interface GroupRepoInfo {
     path: string;
     indexedAt: string | null;
     nodeCount: number;
+    error?: string;
 }
 export interface GroupListResult {
     groups: GroupInfo[];

package/dist/src/mcp-tools/group-list.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"group-list.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/group-list.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAOH,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,SAAS,EAAE,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,aAAa,EAAE,CAAC;CACxB;AAqCD;;;;GAIG;AACH,wBAAsB,YAAY,CAAC,UAAU,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,CAsBhF"}
+{"version":3,"file":"group-list.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/group-list.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAOH,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,SAAS,EAAE,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,aAAa,EAAE,CAAC;CACxB;AAiCD;;;;GAIG;AACH,wBAAsB,YAAY,CAAC,UAAU,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,CAuBhF"}

package/dist/src/mcp-tools/group-list.js

@@ -10,10 +10,10 @@ import { parseGroupConfig } from '../groups/group-config.js';
 function getRepoDbPath(repoPath) {
     return join(repoPath, '.monomind', 'monograph.db');
 }
-function readRepStats(repoName, repoPath) {
+function readRepoStats(repoPath) {
     const dbPath = getRepoDbPath(repoPath);
     if (!existsSync(dbPath)) {
-        return { indexedAt: null, nodeCount: 0 };
+        return { indexedAt: null, nodeCount: 0, error: 'index not found' };
     }
     let db = null;
     try {
@@ -22,14 +22,11 @@ function readRepStats(repoName, repoPath) {
             .prepare(`SELECT value FROM index_meta WHERE key = 'indexed_at'`)
             .get();
         const countRow = db.prepare(`SELECT COUNT(*) as cnt FROM nodes`).get();
-        return {
-            indexedAt: metaRow?.value ?? null,
-            nodeCount: countRow.cnt,
-        };
+        return { indexedAt: metaRow?.value ?? null, nodeCount: countRow.cnt };
     }
     catch (err) {
-        console.warn(`[group-list] Error reading repo "${repoName}": ${err}`);
-        return { indexedAt: null, nodeCount: 0 };
+        const message = err instanceof Error ? err.message : String(err);
+        return { indexedAt: null, nodeCount: 0, error: message };
     }
     finally {
         db?.close();
@@ -44,12 +41,13 @@ export async function getGroupList(configPath) {
     const resolvedPath = configPath ?? join(process.cwd(), 'group.yaml');
     const config = parseGroupConfig(resolvedPath);
     const repos = config.repos.map((repo) => {
-        const { indexedAt, nodeCount } = readRepStats(repo.name, repo.path);
+        const { indexedAt, nodeCount, error } = readRepoStats(repo.path);
         return {
             name: repo.name,
             path: repo.path,
             indexedAt,
             nodeCount,
+            ...(error ? { error } : {}),
         };
     });
     return {

package/dist/src/mcp-tools/group-list.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/impact.d.ts.map

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package/dist/src/mcp-tools/impact.js

@@ -74,11 +74,24 @@ export function getMonographImpact(db, input) {
     const nodeId = node.id;
     // Reverse BFS to find all callers (depth 0 = start node)
     const visited = reverseBfs(nodeId, db, maxDepth, {});
-    // Separate direct callers (depth 1) from transitive (depth 2+)
+    return { node, ...extractCallerResult(db, nodeId, visited) };
+}
+// ── Shared helper: fetch nodes by IDs in a single query ───────────────────────
+function getNodesByIds(db, ids) {
+    if (ids.length === 0)
+        return [];
+    const placeholders = ids.map(() => '?').join(',');
+    const rows = db
+        .prepare(`SELECT * FROM nodes WHERE id IN (${placeholders})`)
+        .all(...ids);
+    return rows.map(rowToNode);
+}
+// ── Shared helper: turn a visited map into structured caller lists ─────────────
+function extractCallerResult(db, startNodeId, visited) {
     const directCallerIds = [];
     const byDepth = new Map();
     for (const [id, depth] of visited.entries()) {
-        if (id === nodeId)
+        if (id === startNodeId)
             continue;
         if (depth === 1) {
             directCallerIds.push(id);
@@ -89,33 +102,18 @@ export function getMonographImpact(db, input) {
             byDepth.set(depth, existing);
         }
     }
-    // Fetch node details for direct callers
-    const getNodesByIds = (ids) => {
-        if (ids.length === 0)
-            return [];
-        const placeholders = ids.map(() => '?').join(',');
-        const rows = db
-            .prepare(`SELECT * FROM nodes WHERE id IN (${placeholders})`)
-            .all(...ids);
-        return rows.map(rowToNode);
-    };
-    const directCallers = getNodesByIds(directCallerIds);
+    const directCallers = getNodesByIds(db, directCallerIds);
     const transitiveCallers = [];
     const sortedDepths = Array.from(byDepth.keys()).sort((a, b) => a - b);
     for (const depth of sortedDepths) {
-        const ids = byDepth.get(depth);
-        transitiveCallers.push({ depth, nodes: getNodesByIds(ids) });
+        transitiveCallers.push({ depth, nodes: getNodesByIds(db, byDepth.get(depth)) });
     }
-    // Collect unique affected file paths (excluding start node)
     const allAffectedNodes = [...directCallers, ...transitiveCallers.flatMap(t => t.nodes)];
-    const affectedFiles = [...new Set(allAffectedNodes
-            .map(n => n.filePath)
-            .filter((p) => p != null))];
-    // Risk score: log2(totalCallerCount + 1) normalized to [0, 1] (max log2(11) ≈ 3.46, capped at 10, /10)
+    const affectedFiles = [...new Set(allAffectedNodes.map(n => n.filePath).filter((p) => p != null))];
     const totalCallerCount = visited.size - 1; // exclude start node
     const rawScore = Math.min(Math.log2(totalCallerCount + 1), 10);
     const riskScore = rawScore / 10;
-    return { node, directCallers, transitiveCallers, affectedFiles, riskScore, riskLevel: computeRiskLevel(riskScore) };
+    return { directCallers, transitiveCallers, affectedFiles, riskScore, riskLevel: computeRiskLevel(riskScore) };
 }
 // ── id-based impact with filtering options ────────────────────────────────────
 export async function monographImpact(db, nodeId, options = {}) {
@@ -128,43 +126,6 @@ export async function monographImpact(db, nodeId, options = {}) {
     }
     const node = rowToNode(nodeRow);
     const visited = reverseBfs(nodeId, db, maxDepth, options);
-    const directCallerIds = [];
-    const byDepth = new Map();
-    for (const [id, depth] of visited.entries()) {
-        if (id === nodeId)
-            continue;
-        if (depth === 1) {
-            directCallerIds.push(id);
-        }
-        else {
-            const existing = byDepth.get(depth) ?? [];
-            existing.push(id);
-            byDepth.set(depth, existing);
-        }
-    }
-    const getNodesByIds = (ids) => {
-        if (ids.length === 0)
-            return [];
-        const placeholders = ids.map(() => '?').join(',');
-        const rows = db
-            .prepare(`SELECT * FROM nodes WHERE id IN (${placeholders})`)
-            .all(...ids);
-        return rows.map(rowToNode);
-    };
-    const directCallers = getNodesByIds(directCallerIds);
-    const transitiveCallers = [];
-    const sortedDepths = Array.from(byDepth.keys()).sort((a, b) => a - b);
-    for (const depth of sortedDepths) {
-        const ids = byDepth.get(depth);
-        transitiveCallers.push({ depth, nodes: getNodesByIds(ids) });
-    }
-    const allAffectedNodes = [...directCallers, ...transitiveCallers.flatMap(t => t.nodes)];
-    const affectedFiles = [...new Set(allAffectedNodes
-            .map(n => n.filePath)
-            .filter((p) => p != null))];
-    const totalCallerCount = visited.size - 1;
-    const rawScore = Math.min(Math.log2(totalCallerCount + 1), 10);
-    const riskScore = rawScore / 10;
-    return { node, directCallers, transitiveCallers, affectedFiles, riskScore, riskLevel: computeRiskLevel(riskScore) };
+    return { node, ...extractCallerResult(db, nodeId, visited) };
 }
 //# sourceMappingURL=impact.js.map

package/dist/src/mcp-tools/impact.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/neighbors.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"neighbors.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/neighbors.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAkBjD,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,aAAa,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,UAAU,GAAG,SAAS,CAAC;CACnC;AAED,MAAM,WAAW,wBAAwB;IACvC,IAAI,EAAE,aAAa,GAAG,IAAI,CAAC;IAC3B,SAAS,EAAE,aAAa,EAAE,CAAC;CAC5B;AAED,wBAAgB,qBAAqB,CACnC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,cAAc,CAAC,EAAE,MAAM,CAAC;IAAC,cAAc,CAAC,EAAE,OAAO,CAAA;CAAE,GACzE,wBAAwB,CAiD1B"}
+{"version":3,"file":"neighbors.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/neighbors.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAkBjD,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,aAAa,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,UAAU,GAAG,SAAS,CAAC;CACnC;AAED,MAAM,WAAW,wBAAwB;IACvC,IAAI,EAAE,aAAa,GAAG,IAAI,CAAC;IAC3B,SAAS,EAAE,aAAa,EAAE,CAAC;CAC5B;AAgCD,wBAAgB,qBAAqB,CACnC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,cAAc,CAAC,EAAE,MAAM,CAAC;IAAC,cAAc,CAAC,EAAE,OAAO,CAAA;CAAE,GACzE,wBAAwB,CAc1B"}

package/dist/src/mcp-tools/neighbors.js

@@ -13,6 +13,26 @@ function rowToNode(row) {
         properties: row['properties'] ? JSON.parse(row['properties']) : undefined,
     };
 }
+// ── Shared edge query helper ──────────────────────────────────────────────────
+function queryEdges(db, nodeId, direction, relationFilter) {
+    // outbound: source_id = nodeId → join target_id
+    // inbound:  target_id = nodeId → join source_id
+    const [idCol, joinCol] = direction === 'outbound'
+        ? ['source_id', 'target_id']
+        : ['target_id', 'source_id'];
+    const sql = relationFilter
+        ? `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.${joinCol} WHERE e.${idCol} = ? AND e.relation = ? LIMIT 50`
+        : `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.${joinCol} WHERE e.${idCol} = ? LIMIT 50`;
+    const params = relationFilter ? [nodeId, relationFilter] : [nodeId];
+    const rows = db.prepare(sql).all(...params);
+    return rows.map(row => ({
+        node: rowToNode(row),
+        relation: row['relation'],
+        confidence: row['confidence'],
+        confidenceScore: row['confidence_score'] ?? 1,
+        direction,
+    }));
+}
 export function getMonographNeighbors(db, input) {
     const nodeRow = db
         .prepare('SELECT * FROM nodes WHERE name = ? LIMIT 1')
@@ -20,39 +40,10 @@ export function getMonographNeighbors(db, input) {
     if (!nodeRow)
         return { node: null, neighbors: [] };
     const node = rowToNode(nodeRow);
-    const neighbors = [];
-    // Outbound edges
-    const outboundSql = input.relationFilter
-        ? `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.target_id WHERE e.source_id = ? AND e.relation = ? LIMIT 50`
-        : `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.target_id WHERE e.source_id = ? LIMIT 50`;
-    const outboundParams = input.relationFilter ? [node.id, input.relationFilter] : [node.id];
-    const outboundRows = db.prepare(outboundSql).all(...outboundParams);
-    for (const row of outboundRows) {
-        neighbors.push({
-            node: rowToNode(row),
-            relation: row['relation'],
-            confidence: row['confidence'],
-            confidenceScore: row['confidence_score'] ?? 1,
-            direction: 'outbound',
-        });
-    }
-    // Inbound edges
-    if (input.includeInbound) {
-        const inboundSql = input.relationFilter
-            ? `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.source_id WHERE e.target_id = ? AND e.relation = ? LIMIT 50`
-            : `SELECT n.*, e.relation, e.confidence, e.confidence_score FROM nodes n JOIN edges e ON n.id = e.source_id WHERE e.target_id = ? LIMIT 50`;
-        const inboundParams = input.relationFilter ? [node.id, input.relationFilter] : [node.id];
-        const inboundRows = db.prepare(inboundSql).all(...inboundParams);
-        for (const row of inboundRows) {
-            neighbors.push({
-                node: rowToNode(row),
-                relation: row['relation'],
-                confidence: row['confidence'],
-                confidenceScore: row['confidence_score'] ?? 1,
-                direction: 'inbound',
-            });
-        }
-    }
+    const neighbors = [
+        ...queryEdges(db, node.id, 'outbound', input.relationFilter),
+        ...(input.includeInbound ? queryEdges(db, node.id, 'inbound', input.relationFilter) : []),
+    ];
     return { node, neighbors };
 }
 //# sourceMappingURL=neighbors.js.map

package/dist/src/mcp-tools/neighbors.js.map

@@ -1 +1 @@
-{"version":3,"file":"neighbors.js","sourceRoot":"","sources":["../../../src/mcp-tools/neighbors.ts"],"names":[],"mappings":"AAGA,SAAS,SAAS,CAAC,GAA4B;IAC7C,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,IAAI,CAAW;QACvB,KAAK,EAAE,GAAG,CAAC,OAAO,CAA2B;QAC7C,IAAI,EAAE,GAAG,CAAC,MAAM,CAAW;QAC3B,SAAS,EAAG,GAAG,CAAC,YAAY,CAAY,IAAI,EAAE;QAC9C,QAAQ,EAAE,GAAG,CAAC,WAAW,CAAuB;QAChD,SAAS,EAAE,GAAG,CAAC,YAAY,CAAuB;QAClD,OAAO,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC9C,WAAW,EAAE,GAAG,CAAC,cAAc,CAAuB;QACtD,UAAU,EAAG,GAAG,CAAC,aAAa,CAAY,KAAK,CAAC;QAChD,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC/C,UAAU,EAAE,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAW,CAAC,CAAC,CAAC,CAAC,SAAS;KACpF,CAAC;AACJ,CAAC;AAeD,MAAM,UAAU,qBAAqB,CACnC,EAAqB,EACrB,KAA0E;IAE1E,MAAM,OAAO,GAAG,EAAE;SACf,OAAO,CAAC,4CAA4C,CAAC;SACrD,GAAG,CAAC,KAAK,CAAC,IAAI,CAAwC,CAAC;IAE1D,IAAI,CAAC,OAAO;QAAE,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC;IAEnD,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,CAAC;IAChC,MAAM,SAAS,GAAoB,EAAE,CAAC;IAEtC,iBAAiB;IACjB,MAAM,WAAW,GAAG,KAAK,CAAC,cAAc;QACtC,CAAC,CAAC,4JAA4J;QAC9J,CAAC,CAAC,yIAAyI,CAAC;IAE9I,MAAM,cAAc,GAAG,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,EAAE,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC1F,MAAM,YAAY,GAAG,EAAE,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,GAAG,cAAc,CAA8B,CAAC;IAEjG,KAAK,MAAM,GAAG,IAAI,YAAY,EAAE,CAAC;QAC/B,SAAS,CAAC,IAAI,CAAC;YACb,IAAI,EAAE,SAAS,CAAC,GAAG,CAAC;YACpB,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAW;YACnC,UAAU,EAAE,GAAG,CAAC,YAAY,CAAW;YACvC,eAAe,EAAG,GAAG,CAAC,kBAAkB,CAAY,IAAI,CAAC;YACzD,SAAS,EAAE,UAAU;SACtB,CAAC,CAAC;IACL,CAAC;IAED,gBAAgB;IAChB,IAAI,KAAK,CAAC,cAAc,EAAE,CAAC;QACzB,MAAM,UAAU,GAAG,KAAK,CAAC,cAAc;YACrC,CAAC,CAAC,4JAA4J;YAC9J,CAAC,CAAC,yIAAyI,CAAC;QAE9I,MAAM,aAAa,GAAG,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,EAAE,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACzF,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,GAAG,aAAa,CAA8B,CAAC;QAE9F,KAAK,MAAM,GAAG,IAAI,WAAW,EAAE,CAAC;YAC9B,SAAS,CAAC,IAAI,CAAC;gBACb,IAAI,EAAE,SAAS,CAAC,GAAG,CAAC;gBACpB,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAW;gBACnC,UAAU,EAAE,GAAG,CAAC,YAAY,CAAW;gBACvC,eAAe,EAAG,GAAG,CAAC,kBAAkB,CAAY,IAAI,CAAC;gBACzD,SAAS,EAAE,SAAS;aACrB,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;AAC7B,CAAC"}
+{"version":3,"file":"neighbors.js","sourceRoot":"","sources":["../../../src/mcp-tools/neighbors.ts"],"names":[],"mappings":"AAGA,SAAS,SAAS,CAAC,GAA4B;IAC7C,OAAO;QACL,EAAE,EAAE,GAAG,CAAC,IAAI,CAAW;QACvB,KAAK,EAAE,GAAG,CAAC,OAAO,CAA2B;QAC7C,IAAI,EAAE,GAAG,CAAC,MAAM,CAAW;QAC3B,SAAS,EAAG,GAAG,CAAC,YAAY,CAAY,IAAI,EAAE;QAC9C,QAAQ,EAAE,GAAG,CAAC,WAAW,CAAuB;QAChD,SAAS,EAAE,GAAG,CAAC,YAAY,CAAuB;QAClD,OAAO,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC9C,WAAW,EAAE,GAAG,CAAC,cAAc,CAAuB;QACtD,UAAU,EAAG,GAAG,CAAC,aAAa,CAAY,KAAK,CAAC;QAChD,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAuB;QAC/C,UAAU,EAAE,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAW,CAAC,CAAC,CAAC,CAAC,SAAS;KACpF,CAAC;AACJ,CAAC;AAeD,iFAAiF;AAEjF,SAAS,UAAU,CACjB,EAAqB,EACrB,MAAc,EACd,SAAiC,EACjC,cAAuB;IAEvB,gDAAgD;IAChD,gDAAgD;IAChD,MAAM,CAAC,KAAK,EAAE,OAAO,CAAC,GAAG,SAAS,KAAK,UAAU;QAC/C,CAAC,CAAC,CAAC,WAAW,EAAE,WAAW,CAAC;QAC5B,CAAC,CAAC,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;IAE/B,MAAM,GAAG,GAAG,cAAc;QACxB,CAAC,CAAC,kGAAkG,OAAO,YAAY,KAAK,kCAAkC;QAC9J,CAAC,CAAC,kGAAkG,OAAO,YAAY,KAAK,eAAe,CAAC;IAE9I,MAAM,MAAM,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;IACpE,MAAM,IAAI,GAAG,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,MAAM,CAA8B,CAAC;IAEzE,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACtB,IAAI,EAAE,SAAS,CAAC,GAAG,CAAC;QACpB,QAAQ,EAAE,GAAG,CAAC,UAAU,CAAW;QACnC,UAAU,EAAE,GAAG,CAAC,YAAY,CAAW;QACvC,eAAe,EAAG,GAAG,CAAC,kBAAkB,CAAY,IAAI,CAAC;QACzD,SAAS;KACV,CAAC,CAAC,CAAC;AACN,CAAC;AAED,MAAM,UAAU,qBAAqB,CACnC,EAAqB,EACrB,KAA0E;IAE1E,MAAM,OAAO,GAAG,EAAE;SACf,OAAO,CAAC,4CAA4C,CAAC;SACrD,GAAG,CAAC,KAAK,CAAC,IAAI,CAAwC,CAAC;IAE1D,IAAI,CAAC,OAAO;QAAE,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC;IAEnD,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,CAAC;IAChC,MAAM,SAAS,GAAoB;QACjC,GAAG,UAAU,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,UAAU,EAAE,KAAK,CAAC,cAAc,CAAC;QAC5D,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,UAAU,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,SAAS,EAAE,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;KAC1F,CAAC;IAEF,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;AAC7B,CAAC"}

package/dist/src/mcp-tools/query.d.ts

@@ -4,6 +4,8 @@ export interface QueryResult {
     label: string;
     name: string;
     filePath?: string;
+    /** Line number where the symbol is defined — enables direct file:line navigation. */
+    startLine?: number | null;
     score: number;
     isProcess: boolean;
 }

package/dist/src/mcp-tools/query.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"query.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/query.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;kBAiBT;QAClB,KAAK,EAAE,MAAM,CAAC;QACd,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,gBAAgB,CAAC,EAAE,OAAO,CAAC;QAC3B,EAAE,CAAC,EAAE,WAAW,CAAC;KAClB,GAAG,OAAO,CAAC,oBAAoB,CAAC;CAsClC,CAAC"}
+{"version":3,"file":"query.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/query.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAEpD,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,qFAAqF;IACrF,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,oBAAoB;IACnC,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;kBAiBT;QAClB,KAAK,EAAE,MAAM,CAAC;QACd,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,gBAAgB,CAAC,EAAE,OAAO,CAAC;QAC3B,EAAE,CAAC,EAAE,WAAW,CAAC;KAClB,GAAG,OAAO,CAAC,oBAAoB,CAAC;CAuClC,CAAC"}

package/dist/src/mcp-tools/query.js

@@ -40,6 +40,7 @@ export const monographQueryTool = {
                 label: h.label ?? 'Symbol',
                 name: h.name ?? h.id,
                 filePath: h.filePath ?? undefined,
+                startLine: h.startLine ?? null,
                 score: h.score,
                 isProcess: h.label === 'Process',
             }));

package/dist/src/mcp-tools/query.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/rename.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"rename.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/rename.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAsBjD,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,aAAa,GAAG,IAAI,CAAC;IAC7B,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAC3B,OAAO,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAC9E,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAID,wBAAgB,kBAAkB,CAChC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAC/E,qBAAqB,CA4EvB"}
+{"version":3,"file":"rename.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/rename.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAsBjD,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,aAAa,GAAG,IAAI,CAAC;IAC7B,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAC3B,OAAO,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAC9E,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAID,wBAAgB,kBAAkB,CAChC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAC/E,qBAAqB,CA6EvB"}

package/dist/src/mcp-tools/rename.js

@@ -1,4 +1,4 @@
-import { readFileSync } from 'fs';
+import { readFileSync, statSync } from 'fs';
 // ── Row → MonographNode mapper ─────────────────────────────────────────────────
 function rowToNode(row) {
     return {
@@ -44,13 +44,21 @@ export function getMonographRename(db, input) {
     const referencingFiles = [...new Set(referencingRows.map(r => r.file_path))];
     // Build changes list by reading source files
     const changes = [];
-    const nameRegex = new RegExp(`\\b${escapeRegExp(input.oldName)}\\b`, 'g');
+    // Two separate regexes: testRe has no `g` flag (safe for repeated test()), replaceRe has `g`
+    const testRe = new RegExp(`\\b${escapeRegExp(input.oldName)}\\b`);
+    const replaceRe = new RegExp(`\\b${escapeRegExp(input.oldName)}\\b`, 'g');
+    const MAX_FILE_BYTES = 1_048_576; // 1 MiB guard
     // File line cache to avoid re-reading the same file multiple times
     const fileLineCache = new Map();
     const getLines = (filePath) => {
         if (fileLineCache.has(filePath))
             return fileLineCache.get(filePath);
         try {
+            const st = statSync(filePath);
+            if (st.size > MAX_FILE_BYTES) {
+                fileLineCache.set(filePath, []);
+                return [];
+            }
             const content = readFileSync(filePath, 'utf-8');
             const lines = content.split('\n');
             fileLineCache.set(filePath, lines);
@@ -69,12 +77,9 @@ export function getMonographRename(db, input) {
         if (lineIdx < 0 || lineIdx >= lines.length)
             continue;
         const originalLine = lines[lineIdx];
-        if (!nameRegex.test(originalLine)) {
-            nameRegex.lastIndex = 0;
+        if (!testRe.test(originalLine))
             continue;
-        }
-        nameRegex.lastIndex = 0;
-        const updatedLine = originalLine.replace(nameRegex, input.newName);
+        const updatedLine = originalLine.replace(replaceRe, input.newName);
         changes.push({
             file: row.file_path,
             line: row.start_line,

package/dist/src/mcp-tools/rename.js.map

@@ -1 +1 @@
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package/dist/src/mcp-tools/route-map.d.ts.map

@@ -1 +1 @@
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