@mirnoorata/codexa 0.2.0

package/dist/parser/json.js

@@ -0,0 +1,318 @@
+import path from "node:path";
+import { isTestPath } from "../language.js";
+import { detectPlaceholderRisks } from "../placeholder-signals.js";
+import { stableId } from "../util.js";
+export function parseJsonManifest(input, sourceText, empty) {
+    const basename = path.posix.basename(input.relativePath);
+    const isNodePackageManifest = isPlausibleNodeManifestPath(input.relativePath);
+    const placeholderRisks = detectPlaceholderRisks({
+        path: input.relativePath,
+        language: "json",
+        sourceText,
+        snapshotId: input.snapshotId,
+        indexedAt: input.indexedAt,
+        test: isTestPath(input.relativePath)
+    });
+    try {
+        const parsed = JSON.parse(sourceText);
+        if (typeof parsed !== "object" || parsed === null || Array.isArray(parsed)) {
+            return { ...empty, risks: placeholderRisks };
+        }
+        const record = parsed;
+        if (basename !== "package.json" && basename !== "tsconfig.json" && !isNodePackageManifest) {
+            return { ...empty, risks: placeholderRisks };
+        }
+        const symbols = [];
+        const usageSites = [];
+        const risks = [...placeholderRisks];
+        const snapshotId = input.snapshotId;
+        const indexedAt = input.indexedAt;
+        if (basename === "package.json" && record.scripts && typeof record.scripts === "object") {
+            for (const [name, command] of Object.entries(record.scripts)) {
+                const id = stableId("manifest-script", input.relativePath, name);
+                symbols.push({
+                    id,
+                    type: "Symbol",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name,
+                    qualifiedName: `npm script ${name}`,
+                    kind: "variable",
+                    language: "json",
+                    exported: false,
+                    decorators: []
+                });
+                usageSites.push({
+                    id: stableId("manifest-usage", input.relativePath, name),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: `npm script ${name}`,
+                    kind: "reference",
+                    text: String(command).slice(0, 240)
+                });
+                if (name.includes("test")) {
+                    risks.push({
+                        id: stableId("manifest-risk", input.relativePath, name),
+                        type: "RiskSignal",
+                        path: input.relativePath,
+                        source: "manifest",
+                        confidence: "authoritative",
+                        snapshotId,
+                        indexedAt,
+                        signal: "test-command",
+                        score: 0.5,
+                        reason: `${name}: ${command}`
+                    });
+                }
+            }
+        }
+        if (basename === "tsconfig.json") {
+            const projectName = input.relativePath === "tsconfig.json" ? "root" : path.posix.dirname(input.relativePath);
+            symbols.push({
+                id: stableId("tsconfig-project", input.relativePath, projectName),
+                type: "Symbol",
+                path: input.relativePath,
+                source: "manifest",
+                confidence: "authoritative",
+                snapshotId,
+                indexedAt,
+                name: projectName,
+                qualifiedName: `typescript project ${projectName}`,
+                kind: "module",
+                language: "json",
+                exported: false,
+                decorators: []
+            });
+            const compilerOptions = record.compilerOptions ?? {};
+            if (compilerOptions.baseUrl || (compilerOptions.paths && Object.keys(compilerOptions.paths).length > 0)) {
+                usageSites.push({
+                    id: stableId("tsconfig-baseurl", input.relativePath, compilerOptions.baseUrl ?? "."),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: compilerOptions.baseUrl ? `baseUrl ${compilerOptions.baseUrl}` : "baseUrl .",
+                    kind: "reference",
+                    text: `baseUrl ${compilerOptions.baseUrl ?? "."}`
+                });
+            }
+            const pathEntries = Object.entries(compilerOptions.paths ?? {});
+            for (const [alias, targets] of pathEntries) {
+                const target = targets[0];
+                if (!target) {
+                    continue;
+                }
+                usageSites.push({
+                    id: stableId("tsconfig-path-alias", input.relativePath, alias, target),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: alias,
+                    kind: "reference",
+                    text: `path alias ${alias} -> ${target}`
+                });
+            }
+            for (const reference of record.references ?? []) {
+                if (typeof reference.path !== "string" || !reference.path.trim()) {
+                    continue;
+                }
+                usageSites.push({
+                    id: stableId("tsconfig-project-reference", input.relativePath, reference.path),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: reference.path,
+                    kind: "reference",
+                    text: `project reference ${reference.path}`
+                });
+                risks.push({
+                    id: stableId("tsconfig-project-reference-risk", input.relativePath, reference.path),
+                    type: "RiskSignal",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    signal: "typescript-project-reference",
+                    score: 1.5,
+                    reason: `project reference ${reference.path}`
+                });
+            }
+            if (typeof record.extends === "string" && record.extends.trim()) {
+                usageSites.push({
+                    id: stableId("tsconfig-extends", input.relativePath, record.extends),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: record.extends,
+                    kind: "reference",
+                    text: `extends ${record.extends}`
+                });
+            }
+        }
+        const nodeManifestNodes = isNodePackageManifest ? validNodeManifestNodes(record.nodes) : [];
+        if (nodeManifestNodes.length > 0) {
+            for (const node of nodeManifestNodes) {
+                const typeId = node.type_id;
+                const title = typeof node.title === "string" ? node.title : typeId;
+                const adapterKey = typeof node.adapter_key === "string" ? node.adapter_key : "";
+                const id = stableId("node-manifest", input.relativePath, typeId);
+                symbols.push({
+                    id,
+                    type: "Symbol",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: typeId,
+                    qualifiedName: `node ${typeId}`,
+                    kind: "node",
+                    language: "json",
+                    exported: true,
+                    decorators: []
+                });
+                usageSites.push({
+                    id: stableId("node-manifest-usage", input.relativePath, typeId),
+                    type: "UsageSite",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    name: typeId,
+                    kind: "reference",
+                    text: `${title}${adapterKey ? ` adapter ${adapterKey}` : ""}`.slice(0, 240)
+                });
+                if (adapterKey) {
+                    usageSites.push({
+                        id: stableId("node-manifest-adapter-usage", input.relativePath, typeId, adapterKey),
+                        type: "UsageSite",
+                        path: input.relativePath,
+                        source: "manifest",
+                        confidence: "derived",
+                        snapshotId,
+                        indexedAt,
+                        name: adapterKey,
+                        kind: "reference",
+                        text: `adapter_key ${adapterKey}`
+                    });
+                }
+                for (const manifestValue of nodeManifestReferenceValues(node)) {
+                    usageSites.push({
+                        id: stableId("node-manifest-field-usage", input.relativePath, typeId, manifestValue),
+                        type: "UsageSite",
+                        path: input.relativePath,
+                        source: "manifest",
+                        confidence: "heuristic",
+                        snapshotId,
+                        indexedAt,
+                        name: manifestValue,
+                        kind: "reference",
+                        text: manifestValue.slice(0, 240)
+                    });
+                }
+                risks.push({
+                    id: stableId("node-manifest-risk", input.relativePath, typeId),
+                    type: "RiskSignal",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "authoritative",
+                    snapshotId,
+                    indexedAt,
+                    signal: "node-manifest",
+                    score: 1.5,
+                    reason: typeId
+                });
+            }
+        }
+        return { ...empty, symbols, usageSites, risks };
+    }
+    catch (error) {
+        return {
+            ...empty,
+            risks: placeholderRisks,
+            parserErrors: [
+                {
+                    id: stableId("json-parser-error", input.relativePath, String(error)),
+                    type: "ParserError",
+                    path: input.relativePath,
+                    source: "manifest",
+                    confidence: "heuristic",
+                    snapshotId: input.snapshotId,
+                    indexedAt: input.indexedAt,
+                    message: error instanceof Error ? error.message : String(error)
+                }
+            ]
+        };
+    }
+}
+function isPlausibleNodeManifestPath(filePath) {
+    if (!/\.json$/iu.test(filePath)) {
+        return false;
+    }
+    const parts = filePath.split("/").filter(Boolean);
+    const basename = parts.at(-1) ?? "";
+    if (basename === "tsconfig.json") {
+        return false;
+    }
+    const hasManifestLayout = parts.some((part) => /^manifests?$/iu.test(part));
+    if (hasManifestLayout) {
+        return true;
+    }
+    const packageIndex = parts.findIndex((part) => /^packages?$/iu.test(part));
+    if (packageIndex < 0) {
+        return false;
+    }
+    if (basename === "package.json") {
+        return parts.length > packageIndex + 2;
+    }
+    return /^(?:[^./][^/]*)\.[^.\/]+\.json$/iu.test(basename);
+}
+function validNodeManifestNodes(nodes) {
+    if (!Array.isArray(nodes)) {
+        return [];
+    }
+    return nodes.filter((node) => typeof node === "object" && node !== null && typeof node.type_id === "string");
+}
+function nodeManifestReferenceValues(node) {
+    const values = new Set();
+    const visit = (value) => {
+        if (typeof value === "string") {
+            if (/\b[a-z][a-z0-9_-]*(?:\.[a-z][a-z0-9_-]*){1,}\b/.test(value)) {
+                values.add(value);
+            }
+            return;
+        }
+        if (Array.isArray(value)) {
+            value.forEach(visit);
+            return;
+        }
+        if (value && typeof value === "object") {
+            for (const child of Object.values(value)) {
+                visit(child);
+            }
+        }
+    };
+    visit(node);
+    return [...values].sort();
+}
+//# sourceMappingURL=json.js.map

package/dist/parser/json.js.map

@@ -0,0 +1 @@
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package/dist/parser/markdown.d.ts

@@ -0,0 +1,3 @@
+import type { ParseResult } from "../types.js";
+import type { ParseFileInput } from "./context.js";
+export declare function parseMarkdownDocument(input: ParseFileInput, sourceText: string, empty: ParseResult): ParseResult;

package/dist/parser/markdown.js

@@ -0,0 +1,180 @@
+import { stableId } from "../util.js";
+import { baseFact, rangeFromOffsets } from "./facts.js";
+import { addCommonRisks, addPatternRisks, addPlaceholderRisks } from "./risks.js";
+export function parseMarkdownDocument(input, sourceText, empty) {
+    const ctx = {
+        path: input.relativePath,
+        language: "markdown",
+        sourceText,
+        snapshotId: input.snapshotId,
+        indexedAt: input.indexedAt,
+        test: false,
+        symbols: [],
+        usageSites: [],
+        imports: [],
+        testEdges: [],
+        risks: [],
+        parserErrors: []
+    };
+    extractMarkdown(ctx);
+    addCommonRisks(ctx);
+    addPatternRisks(ctx);
+    addPlaceholderRisks(ctx);
+    return { ...empty, ...ctx, file: empty.file };
+}
+function extractMarkdown(ctx) {
+    const lines = ctx.sourceText.split(/\r?\n/);
+    const lineOffsets = [];
+    let cursor = 0;
+    for (const line of lines) {
+        lineOffsets.push(cursor);
+        cursor += line.length + 1;
+    }
+    const paragraphLines = [];
+    let paragraphStart = 0;
+    let paragraphCount = 0;
+    const flushParagraph = (endLineIndex) => {
+        const raw = paragraphLines.join(" ").replace(/\s+/g, " ").trim();
+        if (raw.length >= 24 && paragraphCount < 80) {
+            const startByte = lineOffsets[paragraphStart] ?? 0;
+            const endByte = (lineOffsets[Math.max(paragraphStart, endLineIndex - 1)] ?? startByte) + (lines[Math.max(paragraphStart, endLineIndex - 1)]?.length ?? 0);
+            const text = stripMarkdownInline(raw).slice(0, 240);
+            ctx.usageSites.push(markdownUsageFact(ctx, "document text", "reference", text, startByte, endByte, "derived"));
+            paragraphCount += 1;
+        }
+        paragraphLines.length = 0;
+    };
+    for (let index = 0; index < lines.length; index += 1) {
+        const line = lines[index];
+        const startByte = lineOffsets[index] ?? 0;
+        const endByte = startByte + line.length;
+        const heading = /^(#{1,6})\s+(.+?)\s*#*\s*$/u.exec(line);
+        if (heading) {
+            flushParagraph(index);
+            const title = stripMarkdownInline(heading[2]).trim();
+            if (title) {
+                ctx.symbols.push(markdownHeadingFact(ctx, title, heading[1].length, startByte, endByte));
+                ctx.usageSites.push(markdownUsageFact(ctx, title, "reference", `heading ${title}`, startByte, endByte, "authoritative"));
+            }
+            continue;
+        }
+        if (/^\s*(```|~~~)/u.test(line) || line.trim() === "" || /^\s{0,3}[-*+]\s+/u.test(line) || /^\s{0,3}\d+[.)]\s+/u.test(line)) {
+            flushParagraph(index);
+        }
+        else {
+            if (paragraphLines.length === 0) {
+                paragraphStart = index;
+            }
+            paragraphLines.push(line);
+        }
+        extractMarkdownLinksFromLine(ctx, line, startByte);
+        extractMarkdownCodeReferencesFromLine(ctx, line, startByte);
+    }
+    flushParagraph(lines.length);
+}
+function markdownHeadingFact(ctx, title, level, startByte, endByte) {
+    const slug = title
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/gu, "-")
+        .replace(/^-|-$/gu, "");
+    return {
+        ...baseFact("Symbol", ctx.path, ctx.snapshotId, ctx.indexedAt, "markdown", "authoritative", rangeFromOffsets(ctx.sourceText, startByte, endByte)),
+        id: stableId("markdown-heading", ctx.path, slug || title, startByte),
+        type: "Symbol",
+        path: ctx.path,
+        name: title,
+        qualifiedName: `${ctx.path}#${slug || title}`,
+        kind: "module",
+        language: "markdown",
+        exported: level <= 2,
+        decorators: [`h${level}`]
+    };
+}
+function markdownUsageFact(ctx, name, kind, text, startByte, endByte, confidence) {
+    return {
+        ...baseFact("UsageSite", ctx.path, ctx.snapshotId, ctx.indexedAt, "markdown", confidence, rangeFromOffsets(ctx.sourceText, startByte, endByte)),
+        id: stableId("markdown-usage", ctx.path, name, kind, startByte),
+        type: "UsageSite",
+        path: ctx.path,
+        name,
+        kind,
+        text: text.replace(/\s+/g, " ").slice(0, 240)
+    };
+}
+function markdownImportFact(ctx, specifier, startByte, endByte) {
+    return {
+        ...baseFact("ImportEdge", ctx.path, ctx.snapshotId, ctx.indexedAt, "markdown", "derived", rangeFromOffsets(ctx.sourceText, startByte, endByte)),
+        id: stableId("markdown-link-import", ctx.path, specifier, startByte),
+        type: "ImportEdge",
+        path: ctx.path,
+        specifier,
+        reExport: false,
+        typeOnly: false
+    };
+}
+function extractMarkdownLinksFromLine(ctx, line, lineStartByte) {
+    const pattern = /!?\[([^\]]{1,160})\]\(([^)\s]+)(?:\s+"[^"]*")?\)/gu;
+    for (const match of line.matchAll(pattern)) {
+        const full = match[0];
+        if (full.startsWith("!")) {
+            continue;
+        }
+        const label = stripMarkdownInline(match[1]).trim();
+        const target = match[2].trim();
+        const startByte = lineStartByte + (match.index ?? 0);
+        const endByte = startByte + full.length;
+        ctx.usageSites.push(markdownUsageFact(ctx, target, "reference", `link ${label || target} -> ${target}`, startByte, endByte, "derived"));
+        const specifier = markdownLocalLinkSpecifier(target);
+        if (specifier) {
+            ctx.imports.push(markdownImportFact(ctx, specifier, startByte, endByte));
+        }
+    }
+}
+function extractMarkdownCodeReferencesFromLine(ctx, line, lineStartByte) {
+    const pattern = /`([^`\n]{2,180})`/gu;
+    for (const match of line.matchAll(pattern)) {
+        const value = match[1].trim();
+        if (!looksLikePathReference(value) && !looksLikeCommandReference(value)) {
+            continue;
+        }
+        const startByte = lineStartByte + (match.index ?? 0);
+        const endByte = startByte + match[0].length;
+        ctx.usageSites.push(markdownUsageFact(ctx, value, "reference", `inline reference ${value}`, startByte, endByte, "derived"));
+        if (looksLikePathReference(value)) {
+            const specifier = markdownLocalLinkSpecifier(value);
+            if (specifier) {
+                ctx.imports.push(markdownImportFact(ctx, specifier, startByte, endByte));
+            }
+        }
+    }
+}
+function stripMarkdownInline(value) {
+    return value
+        .replace(/`([^`]+)`/gu, "$1")
+        .replace(/\[([^\]]+)\]\([^)]+\)/gu, "$1")
+        .replace(/[*_~]/gu, "")
+        .trim();
+}
+function markdownLocalLinkSpecifier(target) {
+    const clean = target.split(/[?#]/u, 1)[0]?.trim();
+    if (!clean || clean.startsWith("#") || /^[a-z][a-z0-9+.-]*:/iu.test(clean)) {
+        return undefined;
+    }
+    if (clean.startsWith("/")) {
+        return clean;
+    }
+    if (clean.startsWith("./") || clean.startsWith("../")) {
+        return clean;
+    }
+    if (!looksLikePathReference(clean)) {
+        return undefined;
+    }
+    return `./${clean}`;
+}
+function looksLikePathReference(value) {
+    return /(^|\/)[A-Za-z0-9_.-]+\.(?:[cm]?[jt]sx?|py|json|mdx?|rst|txt|toml|ya?ml|sh|service)$/u.test(value) || /^(?:\.{1,2}\/|\/)/u.test(value);
+}
+function looksLikeCommandReference(value) {
+    return /^(?:npm|pnpm|yarn|node|python3?|pytest|vitest|cargo|go|git|npx)\s+/u.test(value);
+}
+//# sourceMappingURL=markdown.js.map

package/dist/parser/markdown.js.map

@@ -0,0 +1 @@
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package/dist/parser/nodes.d.ts

@@ -0,0 +1,5 @@
+import type { SyntaxNode } from "./context.js";
+export declare function decoratorsForNode(node: SyntaxNode, sourceText: string): string[];
+export declare function callName(node: SyntaxNode): string | null;
+export declare function dynamicImportSpecifier(node: SyntaxNode): string | undefined;
+export declare function jsxElementName(node: SyntaxNode): string | null;

package/dist/parser/nodes.js

@@ -0,0 +1,75 @@
+export function decoratorsForNode(node, sourceText) {
+    const decorators = [];
+    for (const child of node.namedChildren) {
+        if (child.type === "decorator") {
+            decorators.push(sourceText.slice(child.startIndex, child.endIndex).trim());
+        }
+    }
+    return decorators;
+}
+export function callName(node) {
+    const fn = node.childForFieldName("function") ?? node.namedChild(0);
+    if (!fn) {
+        return null;
+    }
+    const compact = compactCallableName(fn);
+    if (compact) {
+        return compact;
+    }
+    return fn.text.length <= 120 ? fn.text : truncateInline(fn.text, 120);
+}
+export function dynamicImportSpecifier(node) {
+    const fn = node.childForFieldName("function") ?? node.namedChild(0);
+    if (fn?.text !== "import") {
+        return undefined;
+    }
+    const argument = node.namedChildren.find((child) => child !== fn && child.type === "arguments")?.namedChild(0);
+    const text = argument?.text ?? "";
+    return /^["'][^"']+["']$/.test(text) ? text.slice(1, -1) : undefined;
+}
+function compactCallableName(node) {
+    if (["identifier", "property_identifier"].includes(node.type)) {
+        return node.text;
+    }
+    if (["attribute", "member_expression"].includes(node.type)) {
+        const property = node.childForFieldName("property") ?? node.childForFieldName("attribute") ?? node.namedChildren.at(-1);
+        const object = node.childForFieldName("object");
+        const propertyName = property?.text;
+        if (!propertyName) {
+            return truncateInline(node.text, 120);
+        }
+        if (!object || ["call_expression", "subscript_expression"].includes(object.type)) {
+            return truncateInline(propertyName, 120);
+        }
+        const objectName = compactCallableName(object);
+        if (!objectName) {
+            return truncateInline(propertyName, 120);
+        }
+        return compactDottedName(`${objectName}.${propertyName}`);
+    }
+    if (node.type === "subscript_expression") {
+        const object = node.childForFieldName("object") ?? node.namedChild(0);
+        const objectName = object ? compactCallableName(object) : undefined;
+        return objectName ? `${objectName}[]` : truncateInline(node.text, 120);
+    }
+    return null;
+}
+function compactDottedName(value) {
+    const parts = value.split(".").filter(Boolean);
+    return truncateInline(parts.slice(-3).join("."), 120);
+}
+function truncateInline(value, maxLength) {
+    const compact = value.replace(/\s+/g, " ").trim();
+    if (compact.length <= maxLength) {
+        return compact;
+    }
+    return `${compact.slice(0, Math.max(0, maxLength - 3))}...`;
+}
+export function jsxElementName(node) {
+    const nameNode = node.childForFieldName("name") ?? node.namedChildren.find((child) => ["identifier", "nested_identifier", "member_expression"].includes(child.type));
+    if (!nameNode) {
+        return null;
+    }
+    return nameNode.text.length <= 120 ? nameNode.text : null;
+}
+//# sourceMappingURL=nodes.js.map

package/dist/parser/nodes.js.map

@@ -0,0 +1 @@
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package/dist/parser/python.d.ts

@@ -0,0 +1,2 @@
+import type { ExtractContext, SyntaxNode } from "./context.js";
+export declare function extractPython(root: SyntaxNode, ctx: ExtractContext): void;