@mirnoorata/codexa 0.2.0

package/dist/indexer.js

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+import { promises as fs } from "node:fs";
+import path from "node:path";
+import { acquireCacheLock } from "./cache-lock.js";
+import { discoverRepoFreshness } from "./repo-files.js";
+import { relinkUsageIds, resolveIndexLinks } from "./resolver.js";
+import { externalRiskReportSnapshot, loadExternalRiskSignalReport } from "./risk-ingest.js";
+import { loadOutcomeRankSignals } from "./outcome-ranking.js";
+import { loadImportAliases } from "./indexer/aliases.js";
+import { writeIndexBundle as writeIndexBundleStage } from "./indexer/artifact-writing.js";
+import { discoverIndexInputs } from "./indexer/discovery.js";
+import { applyExternalSymbolFacts, dedupeRiskSignals, riskReportParserError } from "./indexer/external-facts.js";
+import { freshnessFromStored } from "./indexer/freshness.js";
+import { applyGraphStages } from "./indexer/graph-stage.js";
+import { loadPythonSemanticSourceFiles, parseRepoSources, writeParseCache } from "./indexer/parsing.js";
+import { runIndexPipeline } from "./indexer/pipeline.js";
+import { applyModules, applyRanking } from "./indexer/ranking.js";
+import { applyPythonSemanticAssist } from "./semantic/python.js";
+import { applyTypeScriptSemanticAssist } from "./semantic/typescript.js";
+import { loadExternalSymbolReportFacts } from "./symbol-report-ingest.js";
+import { stableId } from "./util.js";
+export const CODEBASE_DIR = ".codex/codebase";
+export { persistIndex, writeIndexBundle } from "./indexer/artifact-writing.js";
+const INDEX_LOCK_DIR = ".codex/cache/codexa-index.lock";
+const INDEX_LOCK_STALE_MS = 120_000;
+export async function buildIndex(options) {
+    const repoRoot = path.resolve(options.repoRoot);
+    const finalContext = await runIndexPipeline({ options, repoRoot }, [
+        discoverStage(),
+        parseStage(),
+        externalFactsStage(),
+        semanticAssistStage(),
+        linkStage(),
+        rankingStage(),
+        graphStage(),
+        freshnessStage(),
+        artifactWritingStage()
+    ]);
+    if (!finalContext.index) {
+        throw new Error("Codexa index pipeline did not produce an index");
+    }
+    return finalContext.index;
+}
+function discoverStage() {
+    return {
+        name: "discover",
+        async run(context) {
+            const discovered = await discoverIndexInputs(context.repoRoot);
+            const indexedAt = new Date().toISOString();
+            const snapshotId = stableId("snapshot", context.repoRoot, discovered.git.headCommit, discovered.git.dirtyFiles.join("\n"), indexedAt);
+            const snapshot = {
+                id: stableId("repo-snapshot", context.repoRoot, discovered.git.headCommit ?? "none"),
+                type: "RepoSnapshot",
+                source: "git",
+                confidence: "authoritative",
+                snapshotId,
+                indexedAt,
+                repoRoot: context.repoRoot,
+                gitRoot: discovered.git.gitRoot,
+                headCommit: discovered.git.headCommit,
+                dirtyFiles: discovered.git.dirtyFiles
+            };
+            return { ...context, discovered, indexedAt, snapshotId, snapshot };
+        }
+    };
+}
+function parseStage() {
+    return {
+        name: "parse",
+        async run(context) {
+            const { discovered, snapshotId, indexedAt, snapshot } = requireIndexContext(context, "parse", ["discovered", "snapshotId", "indexedAt", "snapshot"]);
+            const parsedSources = await parseRepoSources({
+                repoRoot: context.repoRoot,
+                files: discovered.files,
+                skippedFiles: discovered.skippedFiles,
+                snapshotId,
+                indexedAt
+            });
+            const parsed = parsedSources.parsed;
+            const aliases = await loadImportAliases(context.repoRoot, discovered.files.map((file) => file.path));
+            const index = {
+                schemaVersion: 1,
+                snapshot,
+                freshness: {
+                    schemaVersion: 1,
+                    snapshotId,
+                    repoRoot: context.repoRoot,
+                    gitRoot: discovered.git.gitRoot,
+                    headCommit: discovered.git.headCommit,
+                    indexedAt,
+                    dirtyFiles: discovered.git.dirtyFiles,
+                    indexedDirtyFiles: discovered.git.dirtyFiles,
+                    dirtyFileHashes: discovered.dirtyFileHashes,
+                    indexedDirtyFileHashes: discovered.dirtyFileHashes,
+                    missing: false,
+                    stale: false,
+                    reason: discovered.git.dirtyFiles.length > 0 ? "fresh-with-dirty-overlay" : "fresh",
+                    parserErrorCount: 0,
+                    externalRiskReportHashes: {},
+                    indexedExternalRiskReportHashes: {},
+                    externalRiskReportDiagnostics: []
+                },
+                files: parsed.map((result) => ({
+                    ...result.file,
+                    rank: 0,
+                    rankReasons: {},
+                    symbolCount: result.symbols.length,
+                    usageCount: result.usageSites.length,
+                    importCount: result.imports.length,
+                    riskScore: 0
+                })),
+                symbols: parsed.flatMap((result) => result.symbols),
+                usageSites: parsed.flatMap((result) => result.usageSites),
+                imports: parsed.flatMap((result) => result.imports),
+                testEdges: parsed.flatMap((result) => result.testEdges),
+                graphEdges: [],
+                workflows: [],
+                modules: [],
+                risks: parsed.flatMap((result) => result.risks),
+                parserErrors: parsed.flatMap((result) => result.parserErrors)
+            };
+            return { ...context, parsedSources, parsed, aliases, index };
+        }
+    };
+}
+function externalFactsStage() {
+    return {
+        name: "external-facts",
+        async run(context) {
+            const { discovered, indexedAt, index, snapshotId } = requireIndexContext(context, "external-facts", ["discovered", "indexedAt", "index", "snapshotId"]);
+            const [externalRiskReport, externalSymbols] = await Promise.all([
+                loadExternalRiskSignalReport(context.repoRoot, snapshotId, indexedAt),
+                loadExternalSymbolReportFacts(context.repoRoot, snapshotId, indexedAt, new Set(discovered.git.dirtyFiles))
+            ]);
+            const indexWithReports = applyExternalSymbolFacts({
+                ...index,
+                freshness: {
+                    ...index.freshness,
+                    externalRiskReportHashes: externalRiskReport.reportHashes,
+                    indexedExternalRiskReportHashes: externalRiskReport.reportHashes,
+                    externalRiskReportDiagnostics: externalRiskReport.diagnostics
+                },
+                risks: dedupeRiskSignals([...index.risks, ...externalRiskReport.risks]),
+                parserErrors: [...index.parserErrors, ...externalRiskReport.diagnostics.map((diagnostic) => riskReportParserError(diagnostic, snapshotId, indexedAt))]
+            }, externalSymbols);
+            return { ...context, externalSymbols, index: indexWithReports };
+        }
+    };
+}
+function semanticAssistStage() {
+    return {
+        name: "semantic-assist",
+        async run(context) {
+            const { discovered, index } = requireIndexContext(context, "semantic-assist", ["discovered", "index"]);
+            const withTypeScriptSemanticAssist = await applyTypeScriptSemanticAssist(index, {
+                repoRoot: context.repoRoot,
+                files: discovered.files.map((file) => ({
+                    path: file.path,
+                    absolutePath: file.absolutePath,
+                    contentHash: file.contentHash
+                }))
+            });
+            const withPythonSemanticAssist = applyPythonSemanticAssist(withTypeScriptSemanticAssist, {
+                files: await loadPythonSemanticSourceFiles(discovered.files)
+            });
+            return { ...context, index: withPythonSemanticAssist };
+        }
+    };
+}
+function linkStage() {
+    return {
+        name: "link",
+        run(context) {
+            const { aliases, index } = requireIndexContext(context, "link", ["aliases", "index"]);
+            return { ...context, index: relinkUsageIds(resolveIndexLinks(index, aliases)) };
+        }
+    };
+}
+function rankingStage() {
+    return {
+        name: "rank",
+        async run(context) {
+            const { discovered, index } = requireIndexContext(context, "rank", ["discovered", "index"]);
+            const outcomeSignals = await loadOutcomeRankSignals(context.repoRoot, discovered.git.headCommit, new Set(index.files.map((file) => file.path)));
+            return { ...context, index: applyModules(applyRanking(index, discovered.git.churnByPath, outcomeSignals)) };
+        }
+    };
+}
+function graphStage() {
+    return {
+        name: "graph",
+        run(context) {
+            const { externalSymbols, index } = requireIndexContext(context, "graph", ["externalSymbols", "index"]);
+            return { ...context, index: applyGraphStages(index, externalSymbols.graphEdges) };
+        }
+    };
+}
+function freshnessStage() {
+    return {
+        name: "freshness",
+        run(context) {
+            const { index } = requireIndexContext(context, "freshness", ["index"]);
+            return {
+                ...context,
+                index: {
+                    ...index,
+                    freshness: {
+                        ...index.freshness,
+                        parserErrorCount: index.parserErrors.length
+                    }
+                }
+            };
+        }
+    };
+}
+function artifactWritingStage() {
+    return {
+        name: "artifact-writing",
+        async run(context) {
+            const { index, parsedSources } = requireIndexContext(context, "artifact-writing", ["index", "parsedSources"]);
+            if (context.options.writeArtifacts ?? true) {
+                await writeIndexBundleStage(index, context.options.outputDir ?? path.join(context.repoRoot, CODEBASE_DIR));
+                await writeParseCache(context.repoRoot, parsedSources.nextCache);
+            }
+            return context;
+        }
+    };
+}
+function requireIndexContext(context, stage, keys) {
+    for (const key of keys) {
+        if (context[key] === undefined || context[key] === null) {
+            throw new Error(`Codexa index pipeline stage ${stage} missing ${String(key)}`);
+        }
+    }
+    return context;
+}
+export async function buildIndexLocked(options) {
+    const repoRoot = path.resolve(options.repoRoot);
+    const release = await acquireIndexLock(repoRoot);
+    try {
+        return await buildIndex(options);
+    }
+    finally {
+        await release();
+    }
+}
+export async function loadIndex(repoRoot, options = {}) {
+    const outputDir = path.join(path.resolve(repoRoot), CODEBASE_DIR);
+    const index = await readIndexBundle(outputDir);
+    if (index || options.recover === false) {
+        return index;
+    }
+    return recoverIndexBundle(outputDir);
+}
+export async function loadIndexReadOnly(repoRoot) {
+    return loadIndex(repoRoot, { recover: false });
+}
+export async function loadFreshnessReadOnly(repoRoot) {
+    return readFreshnessBundle(path.join(path.resolve(repoRoot), CODEBASE_DIR));
+}
+async function readIndexBundle(outputDir) {
+    try {
+        return normalizeLoadedIndex(JSON.parse(await fs.readFile(path.join(outputDir, "index.json"), "utf8")));
+    }
+    catch {
+        return null;
+    }
+}
+async function readFreshnessBundle(outputDir) {
+    try {
+        return normalizeLoadedFreshness(JSON.parse(await fs.readFile(path.join(outputDir, "freshness.json"), "utf8")));
+    }
+    catch {
+        return null;
+    }
+}
+async function recoverIndexBundle(outputDir) {
+    const parentDir = path.dirname(outputDir);
+    let entries = [];
+    try {
+        entries = await Promise.all((await fs.readdir(parentDir, { withFileTypes: true }))
+            .filter((entry) => entry.isDirectory() && entry.name.startsWith(".codebase.backup-"))
+            .map(async (entry) => ({ name: entry.name, mtimeMs: (await fs.stat(path.join(parentDir, entry.name))).mtimeMs })));
+    }
+    catch {
+        return null;
+    }
+    for (const entry of entries.sort((a, b) => b.mtimeMs - a.mtimeMs || a.name.localeCompare(b.name))) {
+        const backupDir = path.join(parentDir, entry.name);
+        const recovered = await readIndexBundle(backupDir);
+        if (!recovered) {
+            continue;
+        }
+        if (await pathExists(outputDir)) {
+            const corruptDir = path.join(parentDir, `.codebase.corrupt-${process.pid}-${Date.now()}`);
+            await fs.rm(corruptDir, { recursive: true, force: true }).catch(() => undefined);
+            await fs.rename(outputDir, corruptDir).catch(() => undefined);
+        }
+        if (!(await pathExists(outputDir))) {
+            await fs.rename(backupDir, outputDir).catch(() => undefined);
+        }
+        return recovered;
+    }
+    return null;
+}
+function normalizeLoadedIndex(index) {
+    if (index.schemaVersion !== 1 ||
+        !index.snapshot ||
+        !index.freshness ||
+        !Array.isArray(index.files) ||
+        !Array.isArray(index.symbols) ||
+        !Array.isArray(index.usageSites) ||
+        !Array.isArray(index.imports) ||
+        !Array.isArray(index.testEdges) ||
+        !Array.isArray(index.modules) ||
+        !Array.isArray(index.risks) ||
+        !Array.isArray(index.parserErrors)) {
+        throw new Error("Codexa index bundle is incomplete or unsupported");
+    }
+    return {
+        ...index,
+        graphEdges: index.graphEdges ?? [],
+        workflows: index.workflows ?? []
+    };
+}
+function normalizeLoadedFreshness(freshness) {
+    if (freshness.schemaVersion !== 1 ||
+        typeof freshness.snapshotId !== "string" ||
+        typeof freshness.repoRoot !== "string" ||
+        typeof freshness.indexedAt !== "string" ||
+        !Array.isArray(freshness.dirtyFiles) ||
+        !Array.isArray(freshness.indexedDirtyFiles) ||
+        !freshness.dirtyFileHashes ||
+        typeof freshness.dirtyFileHashes !== "object" ||
+        !freshness.indexedDirtyFileHashes ||
+        typeof freshness.indexedDirtyFileHashes !== "object" ||
+        typeof freshness.missing !== "boolean" ||
+        typeof freshness.stale !== "boolean" ||
+        typeof freshness.reason !== "string" ||
+        typeof freshness.parserErrorCount !== "number") {
+        throw new Error("Codexa freshness bundle is incomplete or unsupported");
+    }
+    return freshness;
+}
+export async function getFreshness(repoRoot, index, options = {}) {
+    const repo = path.resolve(repoRoot);
+    const [current, riskReports] = await Promise.all([discoverRepoFreshness(repo), externalRiskReportSnapshot(repo)]);
+    if (index !== undefined) {
+        return freshnessFromStored(repo, current, riskReports, index?.freshness ?? null);
+    }
+    const stored = await loadFreshnessReadOnly(repo);
+    if (stored) {
+        const freshness = freshnessFromStored(repo, current, riskReports, stored);
+        if (!freshness.stale && options.recover !== false && (await indexBundleNewerThanFreshness(repo))) {
+            const loaded = await loadIndex(repo);
+            if (loaded) {
+                return freshnessFromStored(repo, current, riskReports, loaded.freshness);
+            }
+        }
+        return freshness;
+    }
+    const loaded = options.recover === false ? null : await loadIndex(repo);
+    return freshnessFromStored(repo, current, riskReports, loaded?.freshness ?? null);
+}
+async function acquireIndexLock(repoRoot) {
+    return acquireCacheLock({
+        repoRoot,
+        lockDir: INDEX_LOCK_DIR,
+        staleMs: INDEX_LOCK_STALE_MS,
+        timeoutMs: 30_000,
+        label: "Codexa index"
+    });
+}
+async function pathExists(candidate) {
+    try {
+        await fs.stat(candidate);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+async function indexBundleNewerThanFreshness(repoRoot) {
+    try {
+        const outputDir = path.join(repoRoot, CODEBASE_DIR);
+        const [indexStat, freshnessStat] = await Promise.all([
+            fs.stat(path.join(outputDir, "index.json")),
+            fs.stat(path.join(outputDir, "freshness.json"))
+        ]);
+        return indexStat.mtimeMs > freshnessStat.mtimeMs;
+    }
+    catch {
+        return false;
+    }
+}
+//# sourceMappingURL=indexer.js.map

package/dist/indexer.js.map

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package/dist/init.d.ts

@@ -0,0 +1,24 @@
+export type InitToolProfile = "core" | "full";
+export interface InitOptions {
+    autoRefresh?: boolean;
+    cliPath: string;
+    hooks?: boolean;
+    index?: boolean;
+    serverName?: string;
+    toolProfile?: InitToolProfile;
+    agentsMd?: boolean;
+}
+export interface InitResult {
+    repoRoot: string;
+    configPath: string;
+    hooksPath: string | null;
+    agentsMdPath: string | null;
+    serverName: string;
+    indexed: {
+        files: number;
+        symbols: number;
+        usageSites: number;
+    } | null;
+}
+export declare function initializeProject(repoInput: string | undefined, options: InitOptions): Promise<InitResult>;
+export declare function sessionStartSummary(repoInput: string | undefined, includeContext: boolean, autoRefresh?: boolean): Promise<string>;