@mat3ra/esse 2024.3.20-0 → 2024.3.25-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.eslintrc.json +1 -1
- package/{build_schemas.js → build_schemas.ts} +3 -2
- package/compile_ts.ts +1 -1
- package/{lib → dist}/js/esse/utils.js +1 -0
- package/{lib → dist}/js/utils/ajv.js +4 -0
- package/package.json +31 -25
- package/schema/system/timestampable.json +2 -16
- package/src/js/esse/utils.ts +1 -0
- package/src/js/utils/ajv.ts +5 -1
- package/tsconfig-transpile.json +3 -0
- package/tsconfig.json +1 -32
- package/lib/js/example/3pse/db/nist_jarvis/2024.3.13/db_entry.json +0 -91
- package/lib/js/example/3pse/file/applications/espresso/7.2/pw.x.json +0 -94
- package/lib/js/example/core/abstract/2d_data.json +0 -19
- package/lib/js/example/core/abstract/2d_plot.json +0 -26
- package/lib/js/example/core/abstract/3d_grid.json +0 -12
- package/lib/js/example/core/abstract/3d_tensor.json +0 -17
- package/lib/js/example/core/abstract/3d_vector_basis.json +0 -17
- package/lib/js/example/core/abstract/point.json +0 -5
- package/lib/js/example/core/abstract/vector.json +0 -5
- package/lib/js/example/core/primitive/1d_data_series.json +0 -12
- package/lib/js/example/core/primitive/3d_lattice.json +0 -8
- package/lib/js/example/core/primitive/array_of_3_booleans.json +0 -5
- package/lib/js/example/core/primitive/array_of_3_numbers.json +0 -5
- package/lib/js/example/core/primitive/array_of_ids.json +0 -8
- package/lib/js/example/core/primitive/axis.json +0 -4
- package/lib/js/example/core/primitive/scalar.json +0 -3
- package/lib/js/example/core/primitive/string.json +0 -3
- package/lib/js/example/core/reference/experiment/condition.json +0 -12
- package/lib/js/example/core/reference/experiment/location.json +0 -4
- package/lib/js/example/core/reference/experiment.json +0 -38
- package/lib/js/example/core/reference/literature/name.json +0 -5
- package/lib/js/example/core/reference/literature/pages.json +0 -4
- package/lib/js/example/core/reference/literature.json +0 -10
- package/lib/js/example/core/reference/modeling/exabyte.json +0 -9
- package/lib/js/example/core/reference/modeling.json +0 -9
- package/lib/js/example/core/reference.json +0 -9
- package/lib/js/example/core/reusable/atomic_vectors.json +0 -18
- package/lib/js/example/core/reusable/band_gap.json +0 -16
- package/lib/js/example/core/reusable/energy.json +0 -5
- package/lib/js/example/core/reusable/file_metadata.json +0 -5
- package/lib/js/example/core/reusable/object_storage_container_data.json +0 -8
- package/lib/js/example/element.json +0 -17
- package/lib/js/example/job/compute.json +0 -26
- package/lib/js/example/job.json +0 -183
- package/lib/js/example/material.json +0 -128
- package/lib/js/example/method/categorized_method.json +0 -47
- package/lib/js/example/method/method_parameters.json +0 -3
- package/lib/js/example/method.json +0 -7
- package/lib/js/example/methods_directory/legacy/localorbital.json +0 -4
- package/lib/js/example/methods_directory/legacy/pseudopotential.json +0 -4
- package/lib/js/example/methods_directory/legacy/regression.json +0 -61
- package/lib/js/example/methods_directory/legacy/unknown.json +0 -4
- package/lib/js/example/methods_directory/mathematical/cg.json +0 -10
- package/lib/js/example/methods_directory/mathematical/regression.json +0 -65
- package/lib/js/example/methods_directory/physical/ao/dunning.json +0 -13
- package/lib/js/example/methods_directory/physical/psp/file.json +0 -54
- package/lib/js/example/methods_directory/physical/psp.json +0 -67
- package/lib/js/example/methods_directory/physical/pw.json +0 -9
- package/lib/js/example/methods_directory/physical/smearing.json +0 -10
- package/lib/js/example/methods_directory/physical/tetrahedron.json +0 -10
- package/lib/js/example/model/categorized_model.json +0 -77
- package/lib/js/example/model/model_parameters.json +0 -7
- package/lib/js/example/model.json +0 -11
- package/lib/js/example/models_category/pb/qm/abin/gw.json +0 -7
- package/lib/js/example/models_category/pb/qm/dft/ksdft.json +0 -6
- package/lib/js/example/models_category/pb/qm/semp.json +0 -5
- package/lib/js/example/models_directory/gga.json +0 -15
- package/lib/js/example/models_directory/gw.json +0 -15
- package/lib/js/example/models_directory/hybrid.json +0 -15
- package/lib/js/example/models_directory/lda.json +0 -15
- package/lib/js/example/models_directory/legacy/dft.json +0 -12
- package/lib/js/example/models_directory/legacy/ml.json +0 -11
- package/lib/js/example/models_directory/legacy/unknown.json +0 -11
- package/lib/js/example/models_directory/re.json +0 -10
- package/lib/js/example/project.json +0 -25
- package/lib/js/example/properties_directory/electronic_configuration.json +0 -4
- package/lib/js/example/properties_directory/elemental/atomic_radius.json +0 -4
- package/lib/js/example/properties_directory/elemental/electronegativity.json +0 -4
- package/lib/js/example/properties_directory/elemental/ionization_potential.json +0 -4
- package/lib/js/example/properties_directory/non_scalar/band_gaps.json +0 -25
- package/lib/js/example/properties_directory/non_scalar/band_structure.json +0 -47
- package/lib/js/example/properties_directory/non_scalar/charge_density_profile.json +0 -22
- package/lib/js/example/properties_directory/non_scalar/density_of_states.json +0 -55
- package/lib/js/example/properties_directory/non_scalar/dielectric_tensor.json +0 -133
- package/lib/js/example/properties_directory/non_scalar/file_content.json +0 -13
- package/lib/js/example/properties_directory/non_scalar/hubbard_u.json +0 -24
- package/lib/js/example/properties_directory/non_scalar/hubbard_v.json +0 -22
- package/lib/js/example/properties_directory/non_scalar/hubbard_v_nn.json +0 -24
- package/lib/js/example/properties_directory/non_scalar/phonon_dispersions.json +0 -41
- package/lib/js/example/properties_directory/non_scalar/phonon_dos.json +0 -37
- package/lib/js/example/properties_directory/non_scalar/potential_profile.json +0 -32
- package/lib/js/example/properties_directory/non_scalar/reaction_energy_profile.json +0 -30
- package/lib/js/example/properties_directory/non_scalar/stress_tensor.json +0 -21
- package/lib/js/example/properties_directory/non_scalar/total_energy_contributions.json +0 -44
- package/lib/js/example/properties_directory/non_scalar/vibrational_spectrum.json +0 -25
- package/lib/js/example/properties_directory/scalar/electron_affinity.json +0 -5
- package/lib/js/example/properties_directory/scalar/fermi_energy.json +0 -5
- package/lib/js/example/properties_directory/scalar/formation_energy.json +0 -5
- package/lib/js/example/properties_directory/scalar/ionization_potential.json +0 -5
- package/lib/js/example/properties_directory/scalar/pressure.json +0 -5
- package/lib/js/example/properties_directory/scalar/reaction_energy_barrier.json +0 -5
- package/lib/js/example/properties_directory/scalar/surface_energy.json +0 -5
- package/lib/js/example/properties_directory/scalar/total_energy.json +0 -5
- package/lib/js/example/properties_directory/scalar/total_force.json +0 -5
- package/lib/js/example/properties_directory/scalar/valence_band_offset.json +0 -5
- package/lib/js/example/properties_directory/scalar/zero_point_energy.json +0 -5
- package/lib/js/example/properties_directory/structural/atomic_forces.json +0 -22
- package/lib/js/example/properties_directory/structural/basis/atomic_constraints.json +0 -21
- package/lib/js/example/properties_directory/structural/basis/atomic_coordinate.json +0 -8
- package/lib/js/example/properties_directory/structural/basis/atomic_coordinates.json +0 -21
- package/lib/js/example/properties_directory/structural/basis/atomic_element.json +0 -4
- package/lib/js/example/properties_directory/structural/basis/bonds.json +0 -24
- package/lib/js/example/properties_directory/structural/basis.json +0 -46
- package/lib/js/example/properties_directory/structural/density.json +0 -5
- package/lib/js/example/properties_directory/structural/elemental_ratio.json +0 -5
- package/lib/js/example/properties_directory/structural/inchi.json +0 -4
- package/lib/js/example/properties_directory/structural/inchi_key.json +0 -4
- package/lib/js/example/properties_directory/structural/lattice/lattice_bravais.json +0 -13
- package/lib/js/example/properties_directory/structural/lattice/lattice_vectors.json +0 -19
- package/lib/js/example/properties_directory/structural/lattice.json +0 -33
- package/lib/js/example/properties_directory/structural/magnetic_moments.json +0 -22
- package/lib/js/example/properties_directory/structural/molecular_pattern.json +0 -71
- package/lib/js/example/properties_directory/structural/p_norm.json +0 -5
- package/lib/js/example/properties_directory/structural/symmetry.json +0 -9
- package/lib/js/example/properties_directory/structural/volume.json +0 -5
- package/lib/js/example/properties_directory/workflow/convergence/electronic.json +0 -15
- package/lib/js/example/properties_directory/workflow/convergence/ionic.json +0 -20
- package/lib/js/example/properties_directory/workflow/convergence/kpoint.json +0 -22
- package/lib/js/example/property/base.json +0 -31
- package/lib/js/example/software/application.json +0 -7
- package/lib/js/example/software/executable.json +0 -20
- package/lib/js/example/software/flavor.json +0 -9
- package/lib/js/example/software/template.json +0 -14
- package/lib/js/example/software_directory/ml/exabyteml.json +0 -6
- package/lib/js/example/software_directory/ml/unit/execution/evaluate/cross_validate.json +0 -20
- package/lib/js/example/software_directory/ml/unit/execution/initialize.json +0 -23
- package/lib/js/example/software_directory/ml/unit/execution/score.json +0 -18
- package/lib/js/example/software_directory/ml/unit/execution/train.json +0 -29
- package/lib/js/example/software_directory/ml/unit/processing/data_transformation/manipulation.json +0 -14
- package/lib/js/example/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +0 -26
- package/lib/js/example/software_directory/ml/unit/processing/feature_selection/filter_based.json +0 -13
- package/lib/js/example/software_directory/modeling/espresso/arguments.json +0 -5
- package/lib/js/example/software_directory/modeling/espresso.json +0 -6
- package/lib/js/example/software_directory/modeling/nwchem.json +0 -6
- package/lib/js/example/software_directory/modeling/unit/execution.json +0 -19
- package/lib/js/example/software_directory/modeling/vasp.json +0 -6
- package/lib/js/example/software_directory/scripting/jupyter_lab.json +0 -8
- package/lib/js/example/software_directory/scripting/python.json +0 -8
- package/lib/js/example/software_directory/scripting/shell.json +0 -8
- package/lib/js/example/software_directory/scripting/unit/execution.json +0 -22
- package/lib/js/example/system/_material.json +0 -5
- package/lib/js/example/system/_parent_job.json +0 -5
- package/lib/js/example/system/_project.json +0 -5
- package/lib/js/example/system/consistency_check.json +0 -6
- package/lib/js/example/system/creator.json +0 -5
- package/lib/js/example/system/entity_reference.json +0 -5
- package/lib/js/example/system/file_source.json +0 -6
- package/lib/js/example/system/iframe_message.json +0 -9
- package/lib/js/example/system/message.json +0 -16
- package/lib/js/example/system/owner.json +0 -5
- package/lib/js/example/workflow/subworkflow.json +0 -93
- package/lib/js/example/workflow/unit/assignment.json +0 -19
- package/lib/js/example/workflow/unit/condition.json +0 -22
- package/lib/js/example/workflow/unit/execution.json +0 -66
- package/lib/js/example/workflow/unit/input/_inputItemScope.json +0 -4
- package/lib/js/example/workflow/unit/io/api.json +0 -31
- package/lib/js/example/workflow/unit/io/db.json +0 -15
- package/lib/js/example/workflow/unit/io/object_storage.json +0 -12
- package/lib/js/example/workflow/unit/io.json +0 -41
- package/lib/js/example/workflow/unit/map.json +0 -16
- package/lib/js/example/workflow/unit/processing.json +0 -13
- package/lib/js/example/workflow/unit/reduce.json +0 -16
- package/lib/js/example/workflow/unit/runtime/runtime_items.json +0 -14
- package/lib/js/example/workflow.json +0 -129
- package/lib/js/schema/3pse/db/nist_jarvis/2024.3.13/atoms.json +0 -79
- package/lib/js/schema/3pse/db/nist_jarvis/2024.3.13/db_entry.json +0 -91
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_positions.json +0 -72
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/atomic_species.json +0 -30
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/cell.json +0 -89
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/cell_parameters.json +0 -54
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/control.json +0 -181
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/electrons.json +0 -163
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/hubbard.json +0 -219
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/ions.json +0 -216
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/k_points.json +0 -87
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x/system.json +0 -652
- package/lib/js/schema/3pse/file/applications/espresso/7.2/pw.x.json +0 -1776
- package/lib/js/schema/core/abstract/2d_data.json +0 -31
- package/lib/js/schema/core/abstract/2d_plot.json +0 -74
- package/lib/js/schema/core/abstract/3d_grid.json +0 -32
- package/lib/js/schema/core/abstract/3d_tensor.json +0 -18
- package/lib/js/schema/core/abstract/3d_vector_basis.json +0 -43
- package/lib/js/schema/core/abstract/point.json +0 -11
- package/lib/js/schema/core/abstract/vector.json +0 -27
- package/lib/js/schema/core/primitive/1d_data_series.json +0 -16
- package/lib/js/schema/core/primitive/3d_lattice.json +0 -40
- package/lib/js/schema/core/primitive/array_of_3_booleans.json +0 -11
- package/lib/js/schema/core/primitive/array_of_3_numbers.json +0 -11
- package/lib/js/schema/core/primitive/array_of_ids.json +0 -16
- package/lib/js/schema/core/primitive/array_of_strings.json +0 -11
- package/lib/js/schema/core/primitive/axis.json +0 -19
- package/lib/js/schema/core/primitive/group_info.json +0 -16
- package/lib/js/schema/core/primitive/integer_one_or_zero.json +0 -8
- package/lib/js/schema/core/primitive/linked_list/base_node.json +0 -36
- package/lib/js/schema/core/primitive/linked_list/named_node.json +0 -40
- package/lib/js/schema/core/primitive/linked_list/named_node_in_group.json +0 -48
- package/lib/js/schema/core/primitive/linked_list/node_with_type.json +0 -39
- package/lib/js/schema/core/primitive/linked_list.json +0 -171
- package/lib/js/schema/core/primitive/scalar.json +0 -14
- package/lib/js/schema/core/primitive/slugified_entry.json +0 -21
- package/lib/js/schema/core/primitive/slugified_entry_or_slug.json +0 -31
- package/lib/js/schema/core/primitive/string.json +0 -14
- package/lib/js/schema/core/reference/exabyte.json +0 -19
- package/lib/js/schema/core/reference/experiment/condition.json +0 -31
- package/lib/js/schema/core/reference/experiment/location.json +0 -20
- package/lib/js/schema/core/reference/experiment.json +0 -249
- package/lib/js/schema/core/reference/literature/name.json +0 -24
- package/lib/js/schema/core/reference/literature/pages.json +0 -17
- package/lib/js/schema/core/reference/literature.json +0 -131
- package/lib/js/schema/core/reference/modeling/exabyte.json +0 -46
- package/lib/js/schema/core/reference/modeling.json +0 -52
- package/lib/js/schema/core/reference.json +0 -436
- package/lib/js/schema/core/reusable/atomic_data/per_orbital.json +0 -22
- package/lib/js/schema/core/reusable/atomic_data/per_orbital_pair.json +0 -39
- package/lib/js/schema/core/reusable/atomic_data/value_number.json +0 -13
- package/lib/js/schema/core/reusable/atomic_data/value_string.json +0 -13
- package/lib/js/schema/core/reusable/atomic_data_per_orbital_numeric.json +0 -26
- package/lib/js/schema/core/reusable/atomic_data_per_orbital_pair_numeric.json +0 -43
- package/lib/js/schema/core/reusable/atomic_orbital.json +0 -32
- package/lib/js/schema/core/reusable/atomic_scalars.json +0 -29
- package/lib/js/schema/core/reusable/atomic_strings.json +0 -19
- package/lib/js/schema/core/reusable/atomic_vectors.json +0 -42
- package/lib/js/schema/core/reusable/band_gap.json +0 -64
- package/lib/js/schema/core/reusable/categories.json +0 -159
- package/lib/js/schema/core/reusable/category_path.json +0 -7
- package/lib/js/schema/core/reusable/dielectric_tensor_component.json +0 -46
- package/lib/js/schema/core/reusable/energy.json +0 -39
- package/lib/js/schema/core/reusable/file_metadata.json +0 -21
- package/lib/js/schema/core/reusable/frequency_function_matrix.json +0 -30
- package/lib/js/schema/core/reusable/object_storage_container_data.json +0 -32
- package/lib/js/schema/definitions/units.json +0 -103
- package/lib/js/schema/element.json +0 -103
- package/lib/js/schema/in_memory_entity/base.json +0 -65
- package/lib/js/schema/in_memory_entity/defaultable.json +0 -70
- package/lib/js/schema/in_memory_entity/named.json +0 -69
- package/lib/js/schema/in_memory_entity/named_defaultable.json +0 -74
- package/lib/js/schema/in_memory_entity/named_defaultable_has_metadata.json +0 -77
- package/lib/js/schema/in_memory_entity/named_defaultable_runtime_items.json +0 -194
- package/lib/js/schema/job/base.json +0 -378
- package/lib/js/schema/job/compute.json +0 -178
- package/lib/js/schema/job.json +0 -6866
- package/lib/js/schema/material/conventional.json +0 -11
- package/lib/js/schema/material.json +0 -645
- package/lib/js/schema/method/categorized_method.json +0 -221
- package/lib/js/schema/method/method_parameters.json +0 -47
- package/lib/js/schema/method/unit_method.json +0 -191
- package/lib/js/schema/method.json +0 -28
- package/lib/js/schema/methods_category/mathematical/diff/enum_options.json +0 -8
- package/lib/js/schema/methods_category/mathematical/diff/fd.json +0 -165
- package/lib/js/schema/methods_category/mathematical/diff.json +0 -162
- package/lib/js/schema/methods_category/mathematical/discr/enum_options.json +0 -8
- package/lib/js/schema/methods_category/mathematical/discr/mesh/enum_options.json +0 -18
- package/lib/js/schema/methods_category/mathematical/discr/mesh/hybrid.json +0 -168
- package/lib/js/schema/methods_category/mathematical/discr/mesh/nstruct.json +0 -168
- package/lib/js/schema/methods_category/mathematical/discr/mesh/struct/cartesian.json +0 -171
- package/lib/js/schema/methods_category/mathematical/discr/mesh/struct/enum_options.json +0 -8
- package/lib/js/schema/methods_category/mathematical/discr/mesh/struct.json +0 -168
- package/lib/js/schema/methods_category/mathematical/discr/mesh.json +0 -165
- package/lib/js/schema/methods_category/mathematical/discr.json +0 -162
- package/lib/js/schema/methods_category/mathematical/enum_options.json +0 -45
- package/lib/js/schema/methods_category/mathematical/fapprx/basisexp.json +0 -165
- package/lib/js/schema/methods_category/mathematical/fapprx/enum_options.json +0 -13
- package/lib/js/schema/methods_category/mathematical/fapprx/ipol/enum_options.json +0 -18
- package/lib/js/schema/methods_category/mathematical/fapprx/ipol/lin.json +0 -168
- package/lib/js/schema/methods_category/mathematical/fapprx/ipol/poly.json +0 -168
- package/lib/js/schema/methods_category/mathematical/fapprx/ipol/spline.json +0 -168
- package/lib/js/schema/methods_category/mathematical/fapprx/ipol.json +0 -165
- package/lib/js/schema/methods_category/mathematical/fapprx.json +0 -162
- package/lib/js/schema/methods_category/mathematical/intgr/analytic/enum_options.json +0 -20
- package/lib/js/schema/methods_category/mathematical/intgr/analytic/volume.json +0 -178
- package/lib/js/schema/methods_category/mathematical/intgr/analytic.json +0 -165
- package/lib/js/schema/methods_category/mathematical/intgr/diffeq/enum_options.json +0 -13
- package/lib/js/schema/methods_category/mathematical/intgr/diffeq/order1.json +0 -168
- package/lib/js/schema/methods_category/mathematical/intgr/diffeq/order2.json +0 -168
- package/lib/js/schema/methods_category/mathematical/intgr/diffeq.json +0 -165
- package/lib/js/schema/methods_category/mathematical/intgr/enum_options.json +0 -23
- package/lib/js/schema/methods_category/mathematical/intgr/numquad/enum_options.json +0 -13
- package/lib/js/schema/methods_category/mathematical/intgr/numquad/gauss.json +0 -168
- package/lib/js/schema/methods_category/mathematical/intgr/numquad/newcot.json +0 -168
- package/lib/js/schema/methods_category/mathematical/intgr/numquad.json +0 -165
- package/lib/js/schema/methods_category/mathematical/intgr/transf/enum_options.json +0 -8
- package/lib/js/schema/methods_category/mathematical/intgr/transf/fourier.json +0 -168
- package/lib/js/schema/methods_category/mathematical/intgr/transf.json +0 -165
- package/lib/js/schema/methods_category/mathematical/intgr.json +0 -162
- package/lib/js/schema/methods_category/mathematical/linalg/dcomp.json +0 -165
- package/lib/js/schema/methods_category/mathematical/linalg/diag/davidson.json +0 -168
- package/lib/js/schema/methods_category/mathematical/linalg/diag/enum_options.json +0 -8
- package/lib/js/schema/methods_category/mathematical/linalg/diag.json +0 -165
- package/lib/js/schema/methods_category/mathematical/linalg/enum_options.json +0 -23
- package/lib/js/schema/methods_category/mathematical/linalg/lintra.json +0 -165
- package/lib/js/schema/methods_category/mathematical/linalg/matf.json +0 -165
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"manifold(I)": {
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"type": "string",
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"description": "specs of the manifold for atom I (e.g., 3d, 2p...)"
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"label(J)": {
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"description": "label of the atom J (as defined in ATOMIC_SPECIES)"
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"manifold(J)": {
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"description": "specs of the manifold for atom J (e.g., 3d, 2p...)"
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"I": {
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"description": "index of the atom I"
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"J": {
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"type": "integer",
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"description": "index of the atom J"
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"v_val(I,J)": {
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"description": "value of the V parameter for the atom pair I,J (in eV)"
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@@ -1,216 +0,0 @@
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{
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"$id": "3pse/file/applications/espresso/7.2/pw.x/ions",
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"$schema": "http://json-schema.org/draft-07/schema#",
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"title": "ions schema",
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"type": "object",
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"enum": [
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"default": "bfgs",
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"description": "CASE: calculation == 'relax'"
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"properties": {
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"default": "verlet",
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"description": "CASE: calculation == 'md'"
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"properties": {
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"ion_dynamics": {
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"default": "bfgs",
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"description": "CASE: calculation == 'vc-relax'"
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"ion_dynamics": {
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"type": "string",
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"enum": [
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"default": "beeman",
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"description": "CASE: calculation == 'vc-md'"
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"additionalProperties": false,
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"properties": {
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"ion_positions": {
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"type": "string",
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"enum": [
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"default",
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"from_input"
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],
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"default": "default"
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},
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"ion_velocities": {
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"type": "string",
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"enum": [
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"default",
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"from_input"
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],
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"default": "default"
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},
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"pot_extrapolation": {
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"type": "string",
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"enum": [
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"none",
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"atomic",
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"first_order",
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"second_order"
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],
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"default": "atomic",
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"description": "Used to extrapolate the potential from preceding ionic steps."
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},
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"wfc_extrapolation": {
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"type": "string",
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"enum": [
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"none",
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"first_order",
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"second_order"
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],
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"default": "none",
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"description": "Used to extrapolate the wavefunctions from preceding ionic steps."
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},
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"remove_rigid_rot": {
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"type": "boolean",
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"default": false,
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"description": "This keyword is useful when simulating the dynamics and/or the thermodynamics of an isolated system. If set to true the total torque of the internal forces is set to zero by adding new forces that compensate the spurious interaction with the periodic images. This allows for the use of smaller supercells."
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},
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"ion_temperature": {
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"type": "string",
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"enum": [
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"rescaling",
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"rescale-v",
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"rescale-T",
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"reduce-T",
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"berendsen",
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"andersen",
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"svr",
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"initial",
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"not_controlled"
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],
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"default": "not_controlled"
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},
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"tempw": {
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"type": "number",
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"description": "Starting temperature (Kelvin) in MD runs target temperature for most thermostats.",
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"default": 300
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},
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"tolp": {
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"type": "number",
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"description": "Tolerance for velocity rescaling. Velocities are rescaled if the run-averaged and target temperature differ more than tolp.",
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"default": 100
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},
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"delta_t": {
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"type": "number",
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"default": 1
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},
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"nraise": {
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"type": "integer",
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"default": 1
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},
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"refold_pos": {
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"type": "boolean",
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"default": false,
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"description": "This keyword applies only in the case of molecular dynamics or damped dynamics. If true the ions are refolded at each step into the supercell."
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},
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"upscale": {
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"type": "number",
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"description": "Max reduction factor for conv_thr during structural optimization conv_thr is automatically reduced when the relaxation approaches convergence so that forces are still accurate, but conv_thr will not be reduced to less that conv_thr / upscale.",
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"default": 100
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},
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"bfgs_ndim": {
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"type": "integer",
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"default": 1,
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"description": "Number of old forces and displacements vectors used in the PULAY mixing of the residual vectors obtained on the basis of the inverse hessian matrix given by the BFGS algorithm."
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},
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"trust_radius_max": {
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"type": "number",
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"description": "Maximum ionic displacement in the structural relaxation. (bfgs only)",
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"default": 0.8
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},
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"trust_radius_min": {
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"type": "number",
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"description": "Minimum ionic displacement in the structural relaxation BFGS is reset when trust_radius < trust_radius_min. (bfgs only)",
|
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"default": 0.001
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},
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"trust_radius_ini": {
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"type": "number",
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"description": "Initial ionic displacement in the structural relaxation. (bfgs only)",
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"default": 0.5
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},
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"w_1": {
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"type": "number",
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"default": 0.01
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},
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"w_2": {
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"type": "number",
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-
"description": "Parameters used in line search based on the Wolfe conditions. (bfgs only)",
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-
"default": 0.5
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|
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},
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|
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"fire_alpha_init": {
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|
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"type": "number",
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|
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"description": "Initial value of the alpha mixing factor in the FIRE minimization scheme; recommended values are between 0.1 and 0.3",
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|
-
"default": 0.2
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|
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},
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|
-
"fire_falpha": {
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|
-
"type": "number",
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|
-
"description": "Scaling of the alpha mixing parameter for steps with P > 0;",
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|
-
"default": 0.99
|
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|
-
},
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195
|
-
"fire_nmin": {
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|
-
"type": "integer",
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|
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"default": 5,
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|
-
"description": "Minimum number of steps with P > 0 before increase of dt"
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},
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|
-
"fire_f_inc": {
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|
-
"type": "number",
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|
-
"description": "Factor for increasing dt",
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|
-
"default": 1.1
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|
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},
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|
-
"fire_f_dec": {
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|
-
"type": "number",
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|
-
"description": "Factor for decreasing dt",
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|
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"default": 0.5
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|
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},
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|
-
"fire_dtmax": {
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|
-
"type": "number",
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|
-
"description": "Determines the maximum value of dt in the FIRE minimization; dtmax = fire_dtmax*dt",
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|
-
"default": 10
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|
-
}
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|
-
}
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|
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}
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