@mantra-ai/core 0.1.0

package/dist/works/util/normalize.js

@@ -0,0 +1,76 @@
+// @/services/actions/works/lib/util/normalize.ts
+import { normalizeDOI, normalizePMID, normalizePMCID, normalizeArXivId, } from "../id/normalize-ids";
+// Preserve extras while normalizing known keys
+export function normalizeIds(ids) {
+    const out = { ...ids }; // keep everything by default
+    // helpers
+    const trimOrUndef = (s) => typeof s === "string" ? s.trim() || undefined : undefined;
+    const normalizeRxivId = (v) => typeof v === "string" && v.trim()
+        ? v.trim().replace(/v(\d+)$/i, (_, d) => `v${d}`)
+        : undefined;
+    // normalize known keys (delete if normalization yields empty)
+    out.doi = ids.doi ? normalizeDOI(ids.doi)?.toLowerCase() : undefined;
+    if (!out.doi)
+        delete out.doi;
+    if (ids.pmid) {
+        const normalized = normalizePMID(ids.pmid);
+        out.pmid = normalized ? normalized.replace(/^0+/, "") || "0" : undefined;
+    }
+    else {
+        out.pmid = undefined;
+    }
+    if (!out.pmid)
+        delete out.pmid;
+    out.pmcid = ids.pmcid ? normalizePMCID(ids.pmcid) ?? undefined : undefined;
+    if (!out.pmcid)
+        delete out.pmcid;
+    out.arxivId = ids.arxivId
+        ? normalizeArXivId(ids.arxivId)?.replace(/v\d+$/i, "")
+        : undefined;
+    if (!out.arxivId)
+        delete out.arxivId;
+    out.biorxivId = normalizeRxivId(ids.biorxivId);
+    if (!out.biorxivId)
+        delete out.biorxivId;
+    out.medrxivId = normalizeRxivId(ids.medrxivId);
+    if (!out.medrxivId)
+        delete out.medrxivId;
+    if (ids.openalexId) {
+        const trimmed = String(ids.openalexId)
+            .trim()
+            .replace(/^https?:\/\/(www\.)?openalex\.org\//i, "")
+            .replace(/^works\//i, "");
+        if (!trimmed) {
+            out.openalexId = undefined;
+        }
+        else {
+            const upper = trimmed.toUpperCase();
+            out.openalexId = upper.startsWith("W") ? upper : `W${upper}`;
+        }
+        if (!out.openalexId)
+            delete out.openalexId;
+    }
+    else {
+        delete out.openalexId;
+    }
+    out.landingUrl = trimOrUndef(ids.landingUrl);
+    if (!out.landingUrl)
+        delete out.landingUrl;
+    out.license = trimOrUndef(ids.license);
+    if (!out.license)
+        delete out.license;
+    out.publisher = trimOrUndef(ids.publisher);
+    if (!out.publisher)
+        delete out.publisher;
+    out.journal = trimOrUndef(ids.journal);
+    if (!out.journal)
+        delete out.journal;
+    if (typeof ids.year === "number" && Number.isFinite(ids.year))
+        out.year = ids.year;
+    else
+        delete out.year;
+    // IMPORTANT: do NOT touch out.title or any other extra fields.
+    // They are preserved by the spread above.
+    return out;
+}
+//# sourceMappingURL=normalize.js.map

package/dist/works/util/normalize.js.map

@@ -0,0 +1 @@
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package/dist/works/util/parse.d.ts

@@ -0,0 +1,8 @@
+export declare function pickFirstString(arr: any): string | undefined;
+export declare function parseArxivIdFromUrl(url?: string | null): string | null;
+export declare function parseArxivIdFromDoi(doi?: string | null): string | null;
+export declare function parseBiorxivMedrxivIdFromDoi(doi?: string | null, venueHint?: string | null): {
+    biorxivId?: string;
+    medrxivId?: string;
+} | null;
+//# sourceMappingURL=parse.d.ts.map

package/dist/works/util/parse.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"parse.d.ts","sourceRoot":"","sources":["../../../src/works/util/parse.ts"],"names":[],"mappings":"AAAA,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,GAAG,SAAS,CAI5D;AAED,wBAAgB,mBAAmB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAMtE;AAED,wBAAgB,mBAAmB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAItE;AAED,wBAAgB,4BAA4B,CAC1C,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,EACnB,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,GACxB;IAAE,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CASnD"}

package/dist/works/util/parse.js

@@ -0,0 +1,32 @@
+export function pickFirstString(arr) {
+    return Array.isArray(arr)
+        ? arr.find((s) => typeof s === "string")
+        : undefined;
+}
+export function parseArxivIdFromUrl(url) {
+    if (!url)
+        return null;
+    const m = url.match(/arxiv\.org\/(abs|pdf)\/(\d{4}\.\d{4,5}|[a-z\-]+\/\d{7})(?:\.pdf)?/i);
+    return m ? m[2] : null;
+}
+export function parseArxivIdFromDoi(doi) {
+    if (!doi)
+        return null;
+    const m = doi.match(/^10\.48550\/(?:arxiv\.|arxiv:)([^\s]+)$/i);
+    return m ? m[1] : null;
+}
+export function parseBiorxivMedrxivIdFromDoi(doi, venueHint) {
+    if (!doi)
+        return null;
+    const m = doi.match(/^10\.1101\/(.+)$/i);
+    if (!m)
+        return null;
+    const id = m[1];
+    const venue = (venueHint || "").toLowerCase();
+    if (venue.includes("medrxiv"))
+        return { medrxivId: id };
+    if (venue.includes("biorxiv"))
+        return { biorxivId: id };
+    return null;
+}
+//# sourceMappingURL=parse.js.map

package/dist/works/util/parse.js.map

@@ -0,0 +1 @@
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package/dist/works/util/source.d.ts

@@ -0,0 +1,10 @@
+import type { VersionSource } from "../types";
+export declare function inferSourceKind(opts: {
+    biorxivId?: string | null;
+    medrxivId?: string | null;
+    arxivId?: string | null;
+    pmcid?: string | null;
+    landingUrl?: string | null;
+    openalexHostVenue?: string | null;
+}): VersionSource;
+//# sourceMappingURL=source.d.ts.map

package/dist/works/util/source.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"source.d.ts","sourceRoot":"","sources":["../../../src/works/util/source.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAE9C,wBAAgB,eAAe,CAAC,IAAI,EAAE;IACpC,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,iBAAiB,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CACnC,GAAG,aAAa,CA+BhB"}

package/dist/works/util/source.js

@@ -0,0 +1,48 @@
+export function inferSourceKind(opts) {
+    const url = (opts.landingUrl || "").toLowerCase();
+    const venue = (opts.openalexHostVenue || "").toLowerCase();
+    // Strongest: explicit IDs
+    if (opts.biorxivId)
+        return "biorxiv";
+    if (opts.medrxivId)
+        return "medrxiv";
+    if (opts.arxivId)
+        return "arxiv";
+    if (opts.pmcid)
+        return "pmc";
+    // URL-based
+    if (/biorxiv\.org/.test(url))
+        return "biorxiv";
+    if (/medrxiv\.org/.test(url))
+        return "medrxiv";
+    if (/arxiv\.org/.test(url))
+        return "arxiv";
+    if (/europepmc|ncbi\.nlm\.nih\.gov\/pmc/.test(url))
+        return "pmc";
+    if (/journals?\.plos\.org|plos\.org/.test(url))
+        return "plos";
+    if (/elifesciences\.org|elife\.org/.test(url))
+        return "elife";
+    if (/osf\.io/.test(url) || /\/preprints\//.test(url))
+        return "osf"; // catches OSF Preprints
+    // Venue-based (important when landingUrl is doi.org)
+    if (/\bmedrxiv\b/.test(venue))
+        return "medrxiv";
+    if (/\bbiorxiv\b/.test(venue))
+        return "biorxiv";
+    if (/\barxiv\b/.test(venue))
+        return "arxiv";
+    if (/\bplos\b/.test(venue))
+        return "plos";
+    if (/\belife\b/.test(venue))
+        return "elife";
+    if (/\bpubmed central\b|\bpmc\b/.test(venue))
+        return "pmc";
+    if (/open science framework|\bosf\b|osf preprints/.test(venue))
+        return "osf";
+    // Catch-all: known venue but nothing matched → “journal”
+    if (venue)
+        return "publisher";
+    return "other";
+}
+//# sourceMappingURL=source.js.map

package/dist/works/util/source.js.map

@@ -0,0 +1 @@
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package/dist/works/util/version-label.d.ts

@@ -0,0 +1,2 @@
+export declare const normalizeVersionLabel: (s: string) => string;
+//# sourceMappingURL=version-label.d.ts.map

package/dist/works/util/version-label.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"version-label.d.ts","sourceRoot":"","sources":["../../../src/works/util/version-label.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,qBAAqB,GAAI,GAAG,MAAM,WAK9C,CAAC"}

package/dist/works/util/version-label.js

@@ -0,0 +1,8 @@
+export const normalizeVersionLabel = (s) => {
+    const t = (s ?? "").trim().toLowerCase();
+    if (t === "published")
+        return "published";
+    const m = t.match(/^v(\d+)$/);
+    return m ? `v${Number(m[1])}` : "v1";
+};
+//# sourceMappingURL=version-label.js.map

package/dist/works/util/version-label.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"version-label.js","sourceRoot":"","sources":["../../../src/works/util/version-label.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAS,EAAE,EAAE;IACjD,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IACzC,IAAI,CAAC,KAAK,WAAW;QAAE,OAAO,WAAW,CAAC;IAC1C,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC;IAC9B,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;AACvC,CAAC,CAAC"}

package/dist/works/util/work-id.d.ts

@@ -0,0 +1,2 @@
+export declare function createWorkId(year?: number, journal?: string, publisher?: string): Promise<string>;
+//# sourceMappingURL=work-id.d.ts.map

package/dist/works/util/work-id.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"work-id.d.ts","sourceRoot":"","sources":["../../../src/works/util/work-id.ts"],"names":[],"mappings":"AAAA,wBAAsB,YAAY,CAChC,IAAI,CAAC,EAAE,MAAM,EACb,OAAO,CAAC,EAAE,MAAM,EAChB,SAAS,CAAC,EAAE,MAAM,GACjB,OAAO,CAAC,MAAM,CAAC,CAGjB"}

package/dist/works/util/work-id.js

@@ -0,0 +1,27 @@
+export async function createWorkId(year, journal, publisher) {
+    // Placeholder implementation: random 10-digit string
+    return randomTenDigit();
+}
+function randomTenDigit() {
+    // Prefer Web Crypto if available (works in Bun and modern Node runtimes)
+    try {
+        if (typeof crypto !== "undefined" && "getRandomValues" in crypto) {
+            // Generate 10 random digits using Web Crypto
+            const buf = new Uint8Array(10);
+            crypto.getRandomValues(buf);
+            let s = "";
+            for (let i = 0; i < buf.length; i++)
+                s += String(buf[i] % 10);
+            // Ensure the first digit is not 0 to keep it a 10-digit number
+            if (s[0] === "0")
+                s = String((buf[0] % 9) + 1) + s.slice(1);
+            return s;
+        }
+    }
+    catch {
+        // fall through to Math.random fallback
+    }
+    // Fallback: Math.random (sufficient for placeholder usage)
+    return String(Math.floor(1_000_000_000 + Math.random() * 9_000_000_000));
+}
+//# sourceMappingURL=work-id.js.map

package/dist/works/util/work-id.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -0,0 +1,208 @@
+{
+  "name": "@mantra-ai/core",
+  "version": "0.1.0",
+  "private": false,
+  "type": "module",
+  "main": "./dist/index.js",
+  "types": "./dist/index.d.ts",
+  "exports": {
+    ".": "./src/index.ts",
+    "./errors": "./src/errors/index.ts",
+    "./errors/*": "./src/errors/*.ts",
+    "./ai": "./src/ai/index.ts",
+    "./ai/*": "./src/ai/*.ts",
+    "./ai/google": "./src/ai/google/index.ts",
+    "./ai/google/*": "./src/ai/google/*.ts",
+    "./ai/openai": "./src/ai/openai/index.ts",
+    "./ai/openai/*": "./src/ai/openai/*.ts",
+    "./ai/prompts": "./src/ai/prompts/index.ts",
+    "./normalization/jats": "./src/normalization/jats/index.ts",
+    "./normalization/jats/*": "./src/normalization/jats/*.ts",
+    "./normalization/jats/utils/*": "./src/normalization/jats/utils/*.ts",
+    "./normalization/jats/utils/po/*": "./src/normalization/jats/utils/po/*.ts",
+    "./normalization/jats/utils/build/*": "./src/normalization/jats/utils/build/*.ts",
+    "./normalization/jats/utils/collectors/*": "./src/normalization/jats/utils/collectors/*.ts",
+    "./normalization/pdf": "./src/normalization/pdf/index.ts",
+    "./normalization/pdf/*": "./src/normalization/pdf/*.ts",
+    "./normalization/*": "./src/normalization/*.ts",
+    "./works/id/resolveIds": "./src/works/id/resolveIds/index.ts",
+    "./works/id/resolveIds/*": "./src/works/id/resolveIds/*.ts",
+    "./works/id/*": "./src/works/id/*.ts",
+    "./works/pdf-fallback": "./src/works/pdf-fallback/index.ts",
+    "./works/pdf-fallback/*": "./src/works/pdf-fallback/*.ts",
+    "./works/strategies": "./src/works/strategies/index.ts",
+    "./works/strategies/*": "./src/works/strategies/*.ts",
+    "./works/adapters/*": "./src/works/adapters/*.ts",
+    "./works/text/*": "./src/works/text/*.ts",
+    "./works/util/*": "./src/works/util/*.ts",
+    "./works/*": "./src/works/*.ts",
+    "./sources/*": "./src/sources/*.ts",
+    "./types/*": "./src/types/*.ts",
+    "./*": "./src/*.ts"
+  },
+  "publishConfig": {
+    "access": "public",
+    "main": "./dist/index.js",
+    "types": "./dist/index.d.ts",
+    "exports": {
+      ".": {
+        "types": "./dist/index.d.ts",
+        "import": "./dist/index.js"
+      },
+      "./errors": {
+        "types": "./dist/errors/index.d.ts",
+        "import": "./dist/errors/index.js"
+      },
+      "./errors/*": {
+        "types": "./dist/errors/*.d.ts",
+        "import": "./dist/errors/*.js"
+      },
+      "./ai": {
+        "types": "./dist/ai/index.d.ts",
+        "import": "./dist/ai/index.js"
+      },
+      "./ai/*": {
+        "types": "./dist/ai/*.d.ts",
+        "import": "./dist/ai/*.js"
+      },
+      "./ai/google": {
+        "types": "./dist/ai/google/index.d.ts",
+        "import": "./dist/ai/google/index.js"
+      },
+      "./ai/google/*": {
+        "types": "./dist/ai/google/*.d.ts",
+        "import": "./dist/ai/google/*.js"
+      },
+      "./ai/openai": {
+        "types": "./dist/ai/openai/index.d.ts",
+        "import": "./dist/ai/openai/index.js"
+      },
+      "./ai/openai/*": {
+        "types": "./dist/ai/openai/*.d.ts",
+        "import": "./dist/ai/openai/*.js"
+      },
+      "./ai/prompts": {
+        "types": "./dist/ai/prompts/index.d.ts",
+        "import": "./dist/ai/prompts/index.js"
+      },
+      "./normalization/jats": {
+        "types": "./dist/normalization/jats/index.d.ts",
+        "import": "./dist/normalization/jats/index.js"
+      },
+      "./normalization/jats/*": {
+        "types": "./dist/normalization/jats/*.d.ts",
+        "import": "./dist/normalization/jats/*.js"
+      },
+      "./normalization/jats/utils/*": {
+        "types": "./dist/normalization/jats/utils/*.d.ts",
+        "import": "./dist/normalization/jats/utils/*.js"
+      },
+      "./normalization/jats/utils/po/*": {
+        "types": "./dist/normalization/jats/utils/po/*.d.ts",
+        "import": "./dist/normalization/jats/utils/po/*.js"
+      },
+      "./normalization/jats/utils/build/*": {
+        "types": "./dist/normalization/jats/utils/build/*.d.ts",
+        "import": "./dist/normalization/jats/utils/build/*.js"
+      },
+      "./normalization/jats/utils/collectors/*": {
+        "types": "./dist/normalization/jats/utils/collectors/*.d.ts",
+        "import": "./dist/normalization/jats/utils/collectors/*.js"
+      },
+      "./normalization/pdf": {
+        "types": "./dist/normalization/pdf/index.d.ts",
+        "import": "./dist/normalization/pdf/index.js"
+      },
+      "./normalization/pdf/*": {
+        "types": "./dist/normalization/pdf/*.d.ts",
+        "import": "./dist/normalization/pdf/*.js"
+      },
+      "./normalization/*": {
+        "types": "./dist/normalization/*.d.ts",
+        "import": "./dist/normalization/*.js"
+      },
+      "./works/id/resolveIds": {
+        "types": "./dist/works/id/resolveIds/index.d.ts",
+        "import": "./dist/works/id/resolveIds/index.js"
+      },
+      "./works/id/resolveIds/*": {
+        "types": "./dist/works/id/resolveIds/*.d.ts",
+        "import": "./dist/works/id/resolveIds/*.js"
+      },
+      "./works/id/*": {
+        "types": "./dist/works/id/*.d.ts",
+        "import": "./dist/works/id/*.js"
+      },
+      "./works/pdf-fallback": {
+        "types": "./dist/works/pdf-fallback/index.d.ts",
+        "import": "./dist/works/pdf-fallback/index.js"
+      },
+      "./works/pdf-fallback/*": {
+        "types": "./dist/works/pdf-fallback/*.d.ts",
+        "import": "./dist/works/pdf-fallback/*.js"
+      },
+      "./works/strategies": {
+        "types": "./dist/works/strategies/index.d.ts",
+        "import": "./dist/works/strategies/index.js"
+      },
+      "./works/strategies/*": {
+        "types": "./dist/works/strategies/*.d.ts",
+        "import": "./dist/works/strategies/*.js"
+      },
+      "./works/adapters/*": {
+        "types": "./dist/works/adapters/*.d.ts",
+        "import": "./dist/works/adapters/*.js"
+      },
+      "./works/text/*": {
+        "types": "./dist/works/text/*.d.ts",
+        "import": "./dist/works/text/*.js"
+      },
+      "./works/util/*": {
+        "types": "./dist/works/util/*.d.ts",
+        "import": "./dist/works/util/*.js"
+      },
+      "./works/*": {
+        "types": "./dist/works/*.d.ts",
+        "import": "./dist/works/*.js"
+      },
+      "./sources/*": {
+        "types": "./dist/sources/*.d.ts",
+        "import": "./dist/sources/*.js"
+      },
+      "./types/*": {
+        "types": "./dist/types/*.d.ts",
+        "import": "./dist/types/*.js"
+      },
+      "./*": {
+        "types": "./dist/*.d.ts",
+        "import": "./dist/*.js"
+      }
+    }
+  },
+  "files": [
+    "dist",
+    "README.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "clean": "rm -rf dist",
+    "build": "bun run clean && tsc -p tsconfig.build.json",
+    "prepublishOnly": "bun run build",
+    "typecheck": "bunx tsc --noEmit -p tsconfig.json"
+  },
+  "dependencies": {
+    "zod": "^3",
+    "fast-xml-parser": "^4.4.0"
+  },
+  "optionalDependencies": {
+    "@google/genai": "^0.12.0",
+    "jszip": "^3.10.1",
+    "puppeteer-core": "^24.8.2",
+    "@sparticuz/chromium": "^138.0.2"
+  },
+  "engines": {
+    "node": ">=18"
+  },
+  "license": "MIT",
+  "sideEffects": false
+}