@mantra-ai/core 0.1.0

package/dist/works/strategies/arxiv.js

@@ -0,0 +1,56 @@
+import { buildAr5ivHtmlUrl, buildArxivAbsUrl, } from "../../sources/arxiv/client";
+import { isLikelyErrorHtml, isArxivAbsHtml, } from "./shared";
+const UA = process.env.UA || "drylab-reveng-api/1.0";
+async function fetchArxivHtmlIfAvailable(id, UA) {
+    const headers = {
+        Accept: "text/html,application/xhtml+xml",
+        "User-Agent": UA || "drylab-reveng-api/1.0",
+    };
+    const absRes = await fetch(`https://arxiv.org/abs/${id}`, { headers });
+    if (!absRes.ok)
+        return null;
+    const absHtml = await absRes.text();
+    const escaped = id.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
+    const m = absHtml.match(new RegExp(`(?:https://arxiv\\.org)?/html/${escaped}v\\d+`, "i"));
+    if (!m)
+        return null;
+    const htmlUrl = m[0].startsWith("/") ? `https://arxiv.org${m[0]}` : m[0];
+    const htmlRes = await fetch(htmlUrl, { headers });
+    if (!htmlRes.ok)
+        return null;
+    const html = await htmlRes.text();
+    return html && html.trim() ? { url: htmlUrl, html } : null;
+}
+export const arxivStrategy = {
+    name: "arxiv",
+    matches: (ids) => Boolean(ids.arxivId),
+    getFullText: async (ids, ctx) => {
+        const arxivId = ids.arxivId;
+        const ar5ivUrl = buildAr5ivHtmlUrl(arxivId);
+        const { text: ar5ivHtml, finalUrl } = await ctx.fetchText(ar5ivUrl, "text/html,application/xhtml+xml", 3);
+        if (ar5ivHtml &&
+            !isLikelyErrorHtml(ar5ivHtml) &&
+            !isArxivAbsHtml(ar5ivHtml) &&
+            !(finalUrl && /^https?:\/\/arxiv\.org\//i.test(finalUrl))) {
+            return { type: "html", source: "ar5iv", content: ar5ivHtml };
+        }
+        const exp = await fetchArxivHtmlIfAvailable(arxivId, UA);
+        if (exp)
+            return {
+                type: "html",
+                source: "arxiv-html",
+                content: exp.html,
+                url: exp.url,
+            };
+        const jinaUrl = `https://r.jina.ai/http://ar5iv.org/html/${arxivId.replace(/^arxiv:/i, "")}`;
+        const { text: jina } = await ctx.fetchText(jinaUrl, "text/plain, text/html;q=0.9", 2);
+        if (jina && jina.trim().length > 0)
+            return { type: "html", source: "ar5iv-proxy", content: jina };
+        const absUrl = buildArxivAbsUrl(arxivId);
+        const { text: absHtml } = await ctx.fetchText(absUrl, "text/html,application/xhtml+xml", 2);
+        if (absHtml && absHtml.trim().length > 0)
+            return { type: "html", source: "arxiv-abs", content: absHtml };
+        return { type: "html", source: "ar5iv", url: ar5ivUrl };
+    },
+};
+//# sourceMappingURL=arxiv.js.map

package/dist/works/strategies/arxiv.js.map

@@ -0,0 +1 @@
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package/dist/works/strategies/biorxiv.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const biorxivStrategy: FullTextStrategy;
+//# sourceMappingURL=biorxiv.d.ts.map

package/dist/works/strategies/biorxiv.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"biorxiv.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/biorxiv.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAWjD,eAAO,MAAM,eAAe,EAAE,gBA6E7B,CAAC"}

package/dist/works/strategies/biorxiv.js

@@ -0,0 +1,63 @@
+import { fetchBiorxivSourceXmlViaApi, buildBiorxivLatestSourceXmlUrlViaApi, fetchBiorxivFullHtmlViaProxy, } from "../../sources/biorxiv/client";
+import { parseVersionSuffix, extractVersionSuffix, firstFiniteVersion, labelFromVersion, buildBiorxivVersionedId, } from "./shared";
+const UA = process.env.UA || "drylab-reveng-api/1.0";
+export const biorxivStrategy = {
+    name: "biorxiv-id",
+    matches: (ids) => Boolean(ids.biorxivId),
+    getFullText: async (ids) => {
+        const biorxivId = ids.biorxivId;
+        const idForApi = biorxivId.startsWith("10.1101/")
+            ? biorxivId
+            : `10.1101/${biorxivId.replace(/v\d+$/i, "")}`;
+        const preferVersion = parseVersionSuffix(biorxivId);
+        const fetchOpts = { UA, preferVersion };
+        const hit = await fetchBiorxivSourceXmlViaApi(idForApi, fetchOpts);
+        if (hit) {
+            const resolvedVersion = firstFiniteVersion(hit.version, extractVersionSuffix(hit.url), preferVersion, parseVersionSuffix(biorxivId));
+            const versionLabel = labelFromVersion(resolvedVersion);
+            const versionedIdForHtml = buildBiorxivVersionedId(idForApi, resolvedVersion) ??
+                (resolvedVersion
+                    ? buildBiorxivVersionedId(biorxivId, resolvedVersion)
+                    : null);
+            const hasBody = /<(?:body|article-body|sec)\b/i.test(hit.xml);
+            if (!hasBody) {
+                const htmlHit = versionedIdForHtml
+                    ? await fetchBiorxivFullHtmlViaProxy(versionedIdForHtml, UA)
+                    : null;
+                if (htmlHit) {
+                    return {
+                        type: "html",
+                        source: "biorxiv",
+                        content: htmlHit.html,
+                        url: htmlHit.url,
+                        versionLabel,
+                    };
+                }
+            }
+            return {
+                type: "jats-xml",
+                source: "biorxiv",
+                content: hit.xml,
+                url: hit.url,
+                versionLabel,
+            };
+        }
+        const latestRecord = await buildBiorxivLatestSourceXmlUrlViaApi(idForApi, fetchOpts);
+        if (latestRecord?.url) {
+            const resolvedVersion = firstFiniteVersion(latestRecord.version, extractVersionSuffix(latestRecord.url), preferVersion, parseVersionSuffix(biorxivId));
+            return {
+                type: "jats-xml",
+                source: "biorxiv",
+                url: latestRecord.url,
+                versionLabel: labelFromVersion(resolvedVersion),
+            };
+        }
+        return {
+            type: "jats-xml",
+            source: "biorxiv",
+            url: `https://www.biorxiv.org/content/${idForApi}.source.xml`,
+            versionLabel: labelFromVersion(preferVersion),
+        };
+    },
+};
+//# sourceMappingURL=biorxiv.js.map

package/dist/works/strategies/biorxiv.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"biorxiv.js","sourceRoot":"","sources":["../../../src/works/strategies/biorxiv.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,2BAA2B,EAC3B,oCAAoC,EACpC,4BAA4B,GAC7B,MAAM,8BAA8B,CAAC;AAEtC,OAAO,EACL,kBAAkB,EAClB,oBAAoB,EACpB,kBAAkB,EAClB,gBAAgB,EAChB,uBAAuB,GACxB,MAAM,UAAU,CAAC;AAElB,MAAM,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE,IAAI,uBAAuB,CAAC;AAErD,MAAM,CAAC,MAAM,eAAe,GAAqB;IAC/C,IAAI,EAAE,YAAY;IAClB,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;IACxC,WAAW,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE;QACzB,MAAM,SAAS,GAAG,GAAG,CAAC,SAAU,CAAC;QACjC,MAAM,QAAQ,GAAG,SAAS,CAAC,UAAU,CAAC,UAAU,CAAC;YAC/C,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,WAAW,SAAS,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,EAAE,CAAC;QACjD,MAAM,aAAa,GAAG,kBAAkB,CAAC,SAAS,CAAC,CAAC;QACpD,MAAM,SAAS,GAAG,EAAE,EAAE,EAAE,aAAa,EAAW,CAAC;QAEjD,MAAM,GAAG,GAAG,MAAM,2BAA2B,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;QACnE,IAAI,GAAG,EAAE,CAAC;YACR,MAAM,eAAe,GAAG,kBAAkB,CACxC,GAAG,CAAC,OAAO,EACX,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAC7B,aAAa,EACb,kBAAkB,CAAC,SAAS,CAAC,CAC9B,CAAC;YACF,MAAM,YAAY,GAAG,gBAAgB,CAAC,eAAe,CAAC,CAAC;YACvD,MAAM,kBAAkB,GACtB,uBAAuB,CAAC,QAAQ,EAAE,eAAe,CAAC;gBAClD,CAAC,eAAe;oBACd,CAAC,CAAC,uBAAuB,CAAC,SAAS,EAAE,eAAe,CAAC;oBACrD,CAAC,CAAC,IAAI,CAAC,CAAC;YAEZ,MAAM,OAAO,GAAG,+BAA+B,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC9D,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,OAAO,GAAG,kBAAkB;oBAChC,CAAC,CAAC,MAAM,4BAA4B,CAAC,kBAAkB,EAAE,EAAE,CAAC;oBAC5D,CAAC,CAAC,IAAI,CAAC;gBACT,IAAI,OAAO,EAAE,CAAC;oBACZ,OAAO;wBACL,IAAI,EAAE,MAAM;wBACZ,MAAM,EAAE,SAAS;wBACjB,OAAO,EAAE,OAAO,CAAC,IAAI;wBACrB,GAAG,EAAE,OAAO,CAAC,GAAG;wBAChB,YAAY;qBACb,CAAC;gBACJ,CAAC;YACH,CAAC;YAED,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,SAAS;gBACjB,OAAO,EAAE,GAAG,CAAC,GAAG;gBAChB,GAAG,EAAE,GAAG,CAAC,GAAG;gBACZ,YAAY;aACb,CAAC;QACJ,CAAC;QAED,MAAM,YAAY,GAAG,MAAM,oCAAoC,CAC7D,QAAQ,EACR,SAAS,CACV,CAAC;QACF,IAAI,YAAY,EAAE,GAAG,EAAE,CAAC;YACtB,MAAM,eAAe,GAAG,kBAAkB,CACxC,YAAY,CAAC,OAAO,EACpB,oBAAoB,CAAC,YAAY,CAAC,GAAG,CAAC,EACtC,aAAa,EACb,kBAAkB,CAAC,SAAS,CAAC,CAC9B,CAAC;YACF,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,SAAS;gBACjB,GAAG,EAAE,YAAY,CAAC,GAAG;gBACrB,YAAY,EAAE,gBAAgB,CAAC,eAAe,CAAC;aAChD,CAAC;QACJ,CAAC;QAED,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,SAAS;YACjB,GAAG,EAAE,mCAAmC,QAAQ,aAAa;YAC7D,YAAY,EAAE,gBAAgB,CAAC,aAAa,CAAC;SAC9C,CAAC;IACJ,CAAC;CACF,CAAC"}

package/dist/works/strategies/europepmc.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const europePmcStrategy: FullTextStrategy;
+//# sourceMappingURL=europepmc.d.ts.map

package/dist/works/strategies/europepmc.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"europepmc.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/europepmc.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAGV,gBAAgB,EACjB,MAAM,UAAU,CAAC;AAElB,eAAO,MAAM,iBAAiB,EAAE,gBAU/B,CAAC"}

package/dist/works/strategies/europepmc.js

@@ -0,0 +1,15 @@
+import { fetchEpmcJatsByPmcid } from "../../sources/europepmc/client";
+export const europePmcStrategy = {
+    name: "europepmc-pmcid",
+    matches: (ids) => Boolean(ids.pmcid),
+    getFullText: async (ids) => {
+        try {
+            const xml = await fetchEpmcJatsByPmcid(ids.pmcid);
+            if (xml)
+                return { type: "jats-xml", source: "europepmc", content: xml };
+        }
+        catch { }
+        return null;
+    },
+};
+//# sourceMappingURL=europepmc.js.map

package/dist/works/strategies/europepmc.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"europepmc.js","sourceRoot":"","sources":["../../../src/works/strategies/europepmc.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAOtE,MAAM,CAAC,MAAM,iBAAiB,GAAqB;IACjD,IAAI,EAAE,iBAAiB;IACvB,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;IACpC,WAAW,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE;QACzB,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,MAAM,oBAAoB,CAAC,GAAG,CAAC,KAAM,CAAC,CAAC;YACnD,IAAI,GAAG;gBAAE,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,WAAW,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;QAC1E,CAAC;QAAC,MAAM,CAAC,CAAA,CAAC;QACV,OAAO,IAAI,CAAC;IACd,CAAC;CACF,CAAC"}

package/dist/works/strategies/index.d.ts

@@ -0,0 +1,12 @@
+export { europePmcStrategy } from "./europepmc";
+export { plosStrategy } from "./plos";
+export { biorxivStrategy } from "./biorxiv";
+export { medrxivStrategy } from "./medrxiv";
+export { ten1101FallbackStrategy } from "./ten1101";
+export { arxivStrategy } from "./arxiv";
+export { landingUrlStrategy } from "./landing-url";
+export { fetchTextWithRetries } from "./shared";
+import type { FullTextStrategy } from "../types";
+export declare const strategiesInOrder: FullTextStrategy[];
+export type { FullTextStrategy, StrategyContext, FetchTextFn, } from "../types";
+//# sourceMappingURL=index.d.ts.map

package/dist/works/strategies/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAC;AACtC,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AACxC,OAAO,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAEnD,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAC;AAEhD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAWjD,eAAO,MAAM,iBAAiB,EAAE,gBAAgB,EAQ/C,CAAC;AAEF,YAAY,EACV,gBAAgB,EAChB,eAAe,EACf,WAAW,GACZ,MAAM,UAAU,CAAC"}

package/dist/works/strategies/index.js

@@ -0,0 +1,19 @@
+export { europePmcStrategy } from "./europepmc";
+export { plosStrategy } from "./plos";
+export { biorxivStrategy } from "./biorxiv";
+export { medrxivStrategy } from "./medrxiv";
+export { ten1101FallbackStrategy } from "./ten1101";
+export { arxivStrategy } from "./arxiv";
+export { landingUrlStrategy } from "./landing-url";
+export { fetchTextWithRetries } from "./shared";
+import { europePmcStrategy, plosStrategy, biorxivStrategy, medrxivStrategy, ten1101FallbackStrategy, arxivStrategy, landingUrlStrategy, } from "./index";
+export const strategiesInOrder = [
+    europePmcStrategy,
+    plosStrategy,
+    biorxivStrategy,
+    medrxivStrategy,
+    ten1101FallbackStrategy,
+    arxivStrategy,
+    landingUrlStrategy,
+];
+//# sourceMappingURL=index.js.map

package/dist/works/strategies/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/works/strategies/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAC;AACtC,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AACxC,OAAO,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AAEnD,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAC;AAGhD,OAAO,EACL,iBAAiB,EACjB,YAAY,EACZ,eAAe,EACf,eAAe,EACf,uBAAuB,EACvB,aAAa,EACb,kBAAkB,GACnB,MAAM,SAAS,CAAC;AAEjB,MAAM,CAAC,MAAM,iBAAiB,GAAuB;IACnD,iBAAiB;IACjB,YAAY;IACZ,eAAe;IACf,eAAe;IACf,uBAAuB;IACvB,aAAa;IACb,kBAAkB;CACnB,CAAC"}

package/dist/works/strategies/landing-url.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const landingUrlStrategy: FullTextStrategy;
+//# sourceMappingURL=landing-url.d.ts.map

package/dist/works/strategies/landing-url.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"landing-url.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/landing-url.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAEjD,eAAO,MAAM,kBAAkB,EAAE,gBAQhC,CAAC"}

package/dist/works/strategies/landing-url.js

@@ -0,0 +1,10 @@
+export const landingUrlStrategy = {
+    name: "landing-url",
+    matches: (ids) => Boolean(ids.landingUrl),
+    getFullText: async (ids) => ({
+        type: "html",
+        source: "publisher",
+        url: ids.landingUrl,
+    }),
+};
+//# sourceMappingURL=landing-url.js.map

package/dist/works/strategies/landing-url.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"landing-url.js","sourceRoot":"","sources":["../../../src/works/strategies/landing-url.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,kBAAkB,GAAqB;IAClD,IAAI,EAAE,aAAa;IACnB,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC;IACzC,WAAW,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC;QAC3B,IAAI,EAAE,MAAM;QACZ,MAAM,EAAE,WAAW;QACnB,GAAG,EAAE,GAAG,CAAC,UAAW;KACrB,CAAC;CACH,CAAC"}

package/dist/works/strategies/medrxiv.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const medrxivStrategy: FullTextStrategy;
+//# sourceMappingURL=medrxiv.d.ts.map

package/dist/works/strategies/medrxiv.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"medrxiv.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/medrxiv.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAUjD,eAAO,MAAM,eAAe,EAAE,gBAuD7B,CAAC"}

package/dist/works/strategies/medrxiv.js

@@ -0,0 +1,47 @@
+import { fetchMedrxivSourceXmlViaApi, buildMedrxivLatestSourceXmlUrlViaApi, } from "../../sources/medrxiv/client";
+import { parseVersionSuffix, extractVersionSuffix, firstFiniteVersion, labelFromVersion, } from "./shared";
+const UA = process.env.UA || "drylab-reveng-api/1.0";
+export const medrxivStrategy = {
+    name: "medrxiv-id",
+    matches: (ids) => Boolean(ids.medrxivId),
+    getFullText: async (ids) => {
+        const medrxivId = ids.medrxivId;
+        const core = medrxivId.replace(/^10\.1101\//i, "").replace(/v\d+$/i, "");
+        const doiForApi = `10.1101/${core}`;
+        const preferVersion = parseVersionSuffix(medrxivId);
+        const hit = await fetchMedrxivSourceXmlViaApi(doiForApi, {
+            UA,
+            preferVersion,
+        });
+        if (hit) {
+            const resolvedVersion = firstFiniteVersion(hit.version, extractVersionSuffix(hit.url), preferVersion, parseVersionSuffix(medrxivId));
+            return {
+                type: "jats-xml",
+                source: "medrxiv",
+                content: hit.xml,
+                url: hit.url,
+                versionLabel: labelFromVersion(resolvedVersion),
+            };
+        }
+        const latestRecord = await buildMedrxivLatestSourceXmlUrlViaApi(doiForApi, {
+            UA,
+            preferVersion,
+        });
+        if (latestRecord?.url) {
+            const resolvedVersion = firstFiniteVersion(latestRecord.version, extractVersionSuffix(latestRecord.url), preferVersion, parseVersionSuffix(medrxivId));
+            return {
+                type: "jats-xml",
+                source: "medrxiv",
+                url: latestRecord.url,
+                versionLabel: labelFromVersion(resolvedVersion),
+            };
+        }
+        return {
+            type: "jats-xml",
+            source: "medrxiv",
+            url: `https://www.medrxiv.org/content/10.1101/${core}.source.xml`,
+            versionLabel: labelFromVersion(preferVersion),
+        };
+    },
+};
+//# sourceMappingURL=medrxiv.js.map

package/dist/works/strategies/medrxiv.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"medrxiv.js","sourceRoot":"","sources":["../../../src/works/strategies/medrxiv.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,2BAA2B,EAC3B,oCAAoC,GACrC,MAAM,8BAA8B,CAAC;AAEtC,OAAO,EACL,kBAAkB,EAClB,oBAAoB,EACpB,kBAAkB,EAClB,gBAAgB,GACjB,MAAM,UAAU,CAAC;AAElB,MAAM,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE,IAAI,uBAAuB,CAAC;AAErD,MAAM,CAAC,MAAM,eAAe,GAAqB;IAC/C,IAAI,EAAE,YAAY;IAClB,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;IACxC,WAAW,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE;QACzB,MAAM,SAAS,GAAG,GAAG,CAAC,SAAU,CAAC;QACjC,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,cAAc,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;QACzE,MAAM,SAAS,GAAG,WAAW,IAAI,EAAE,CAAC;QACpC,MAAM,aAAa,GAAG,kBAAkB,CAAC,SAAS,CAAC,CAAC;QAEpD,MAAM,GAAG,GAAG,MAAM,2BAA2B,CAAC,SAAS,EAAE;YACvD,EAAE;YACF,aAAa;SACd,CAAC,CAAC;QACH,IAAI,GAAG,EAAE,CAAC;YACR,MAAM,eAAe,GAAG,kBAAkB,CACxC,GAAG,CAAC,OAAO,EACX,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAC7B,aAAa,EACb,kBAAkB,CAAC,SAAS,CAAC,CAC9B,CAAC;YACF,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,SAAS;gBACjB,OAAO,EAAE,GAAG,CAAC,GAAG;gBAChB,GAAG,EAAE,GAAG,CAAC,GAAG;gBACZ,YAAY,EAAE,gBAAgB,CAAC,eAAe,CAAC;aAChD,CAAC;QACJ,CAAC;QAED,MAAM,YAAY,GAAG,MAAM,oCAAoC,CAAC,SAAS,EAAE;YACzE,EAAE;YACF,aAAa;SACd,CAAC,CAAC;QACH,IAAI,YAAY,EAAE,GAAG,EAAE,CAAC;YACtB,MAAM,eAAe,GAAG,kBAAkB,CACxC,YAAY,CAAC,OAAO,EACpB,oBAAoB,CAAC,YAAY,CAAC,GAAG,CAAC,EACtC,aAAa,EACb,kBAAkB,CAAC,SAAS,CAAC,CAC9B,CAAC;YACF,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,SAAS;gBACjB,GAAG,EAAE,YAAY,CAAC,GAAG;gBACrB,YAAY,EAAE,gBAAgB,CAAC,eAAe,CAAC;aAChD,CAAC;QACJ,CAAC;QAED,OAAO;YACL,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,SAAS;YACjB,GAAG,EAAE,2CAA2C,IAAI,aAAa;YACjE,YAAY,EAAE,gBAAgB,CAAC,aAAa,CAAC;SAC9C,CAAC;IACJ,CAAC;CACF,CAAC"}

package/dist/works/strategies/plos.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const plosStrategy: FullTextStrategy;
+//# sourceMappingURL=plos.d.ts.map

package/dist/works/strategies/plos.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"plos.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/plos.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAEjD,eAAO,MAAM,YAAY,EAAE,gBAU1B,CAAC"}

package/dist/works/strategies/plos.js

@@ -0,0 +1,15 @@
+import { fetchPlosJatsXml } from "../../sources/plos/client";
+export const plosStrategy = {
+    name: "plos-doi",
+    matches: (ids) => Boolean(ids.doi && /^10\.1371\//i.test(ids.doi)),
+    getFullText: async (ids) => {
+        try {
+            const xml = await fetchPlosJatsXml(ids.doi);
+            if (xml)
+                return { type: "jats-xml", source: "plos", content: xml };
+        }
+        catch { }
+        return null;
+    },
+};
+//# sourceMappingURL=plos.js.map

package/dist/works/strategies/plos.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"plos.js","sourceRoot":"","sources":["../../../src/works/strategies/plos.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAC;AAG7D,MAAM,CAAC,MAAM,YAAY,GAAqB;IAC5C,IAAI,EAAE,UAAU;IAChB,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,IAAI,cAAc,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAClE,WAAW,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE;QACzB,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,MAAM,gBAAgB,CAAC,GAAG,CAAC,GAAI,CAAC,CAAC;YAC7C,IAAI,GAAG;gBAAE,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;QACrE,CAAC;QAAC,MAAM,CAAC,CAAA,CAAC;QACV,OAAO,IAAI,CAAC;IACd,CAAC;CACF,CAAC"}

package/dist/works/strategies/shared.d.ts

@@ -0,0 +1,11 @@
+import type { FetchTextFn } from "../types";
+export declare const cloneJson: <T>(value: T) => T;
+export declare function parseVersionSuffix(value?: string | null): number | null;
+export declare function labelFromVersion(version?: number | null): string | undefined;
+export declare const extractVersionSuffix: (value?: string | null) => number | null;
+export declare const firstFiniteVersion: (...candidates: Array<number | null | undefined>) => number | null;
+export declare const buildBiorxivVersionedId: (idOrDoi: string, version?: number | null) => string | null;
+export declare const isLikelyErrorHtml: (html: string) => boolean;
+export declare const isArxivAbsHtml: (html: string) => boolean;
+export declare const fetchTextWithRetries: FetchTextFn;
+//# sourceMappingURL=shared.d.ts.map

package/dist/works/strategies/shared.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"shared.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/shared.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAmB,MAAM,UAAU,CAAC;AAI7D,eAAO,MAAM,SAAS,GAAI,CAAC,EAAE,OAAO,CAAC,KAAG,CAGD,CAAC;AAExC,wBAAgB,kBAAkB,CAAC,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAMvE;AAED,wBAAgB,gBAAgB,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,GAAG,SAAS,CAG5E;AAED,eAAO,MAAM,oBAAoB,GAAI,QAAQ,MAAM,GAAG,IAAI,KAAG,MAAM,GAAG,IAQrE,CAAC;AAEF,eAAO,MAAM,kBAAkB,GAC7B,GAAG,YAAY,KAAK,CAAC,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC,KAC9C,MAAM,GAAG,IAQX,CAAC;AAEF,eAAO,MAAM,uBAAuB,GAClC,SAAS,MAAM,EACf,UAAU,MAAM,GAAG,IAAI,KACtB,MAAM,GAAG,IASX,CAAC;AAEF,eAAO,MAAM,iBAAiB,GAAI,MAAM,MAAM,KAAG,OAOhD,CAAC;AAEF,eAAO,MAAM,cAAc,GAAI,MAAM,MAAM,KAAG,OAGN,CAAC;AAEzC,eAAO,MAAM,oBAAoB,EAAE,WAqClC,CAAC"}

package/dist/works/strategies/shared.js

@@ -0,0 +1,97 @@
+const UA = process.env.UA || "drylab-reveng-api/1.0";
+export const cloneJson = (value) => value === null || value === undefined
+    ? value
+    : JSON.parse(JSON.stringify(value));
+export function parseVersionSuffix(value) {
+    if (!value)
+        return null;
+    const m = value.trim().match(/v(\d+)$/i);
+    if (!m)
+        return null;
+    const n = parseInt(m[1], 10);
+    return Number.isFinite(n) ? n : null;
+}
+export function labelFromVersion(version) {
+    if (!version || !Number.isFinite(version))
+        return undefined;
+    return `v${version}`;
+}
+export const extractVersionSuffix = (value) => {
+    if (!value)
+        return null;
+    const match = String(value)
+        .trim()
+        .match(/v(\d+)(?:[^0-9]|$)/i);
+    if (!match || !match[1])
+        return null;
+    const n = parseInt(match[1], 10);
+    return Number.isFinite(n) ? n : null;
+};
+export const firstFiniteVersion = (...candidates) => {
+    for (const c of candidates) {
+        if (c !== null && c !== undefined) {
+            const n = Number(c);
+            if (Number.isFinite(n) && n > 0)
+                return n;
+        }
+    }
+    return null;
+};
+export const buildBiorxivVersionedId = (idOrDoi, version) => {
+    if (!version || !Number.isFinite(version))
+        return null;
+    const trimmed = String(idOrDoi || "").trim();
+    if (!trimmed)
+        return null;
+    const hasPrefix = /^10\.1101\//i.test(trimmed);
+    const base = trimmed.replace(/^10\.1101\//i, "").replace(/v\d+$/i, "");
+    if (!base)
+        return null;
+    const suffix = `v${version}`;
+    return `${hasPrefix ? "10.1101/" : ""}${base}${suffix}`;
+};
+export const isLikelyErrorHtml = (html) => {
+    const s = html.slice(0, 4096).toLowerCase();
+    return (s.includes("<title>502") ||
+        s.includes("<h1>502") ||
+        (s.includes("error") && s.includes("ar5iv")));
+};
+export const isArxivAbsHtml = (html) => /<link\s+rel=["']canonical["']\s+href=["']https:\/\/arxiv\.org\/abs\//i.test(html) || /id=["']abs-outer["']/.test(html);
+export const fetchTextWithRetries = async (url, accept = "text/html,application/xhtml+xml", tries = 2) => {
+    const headers = {
+        Accept: accept,
+        "User-Agent": UA || "drylab-reveng-api/1.0",
+    };
+    let lastStatus;
+    let failureReason;
+    for (let i = 0; i < Math.max(1, tries); i++) {
+        try {
+            const res = await fetch(url, { headers });
+            lastStatus = res.status;
+            if (res.ok) {
+                const text = await res.text();
+                if (text && text.length > 0)
+                    return { text, finalUrl: res.url };
+                failureReason = "empty_response";
+            }
+            else if (res.status === 404) {
+                failureReason = "not_found";
+            }
+            else if (res.status === 429) {
+                failureReason = "rate_limited";
+            }
+            else if (res.status >= 500) {
+                failureReason = "server_error";
+            }
+            else {
+                failureReason = "server_error";
+            }
+        }
+        catch {
+            failureReason = "network_error";
+        }
+        await new Promise((r) => setTimeout(r, 300 * (i + 1)));
+    }
+    return { text: null, failureReason, lastStatus };
+};
+//# sourceMappingURL=shared.js.map

package/dist/works/strategies/shared.js.map

@@ -0,0 +1 @@
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package/dist/works/strategies/ten1101.d.ts

@@ -0,0 +1,3 @@
+import type { FullTextStrategy } from "../types";
+export declare const ten1101FallbackStrategy: FullTextStrategy;
+//# sourceMappingURL=ten1101.d.ts.map

package/dist/works/strategies/ten1101.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ten1101.d.ts","sourceRoot":"","sources":["../../../src/works/strategies/ten1101.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AAUjD,eAAO,MAAM,uBAAuB,EAAE,gBAkGrC,CAAC"}

package/dist/works/strategies/ten1101.js

@@ -0,0 +1,84 @@
+import { fetchBiorxivSourceXmlViaApi, buildBiorxivLatestSourceXmlUrlViaApi, } from "../../sources/biorxiv/client";
+import { fetchMedrxivSourceXmlViaApi, buildMedrxivLatestSourceXmlUrlViaApi, } from "../../sources/medrxiv/client";
+import { parseVersionSuffix, extractVersionSuffix, firstFiniteVersion, labelFromVersion, } from "./shared";
+const UA = process.env.UA || "drylab-reveng-api/1.0";
+export const ten1101FallbackStrategy = {
+    name: "generic-10.1101",
+    matches: (ids) => Boolean(!ids.biorxivId &&
+        !ids.medrxivId &&
+        ids.doi &&
+        /^10\.1101\//i.test(ids.doi)),
+    getFullText: async (ids) => {
+        const doi = ids.doi;
+        const core = doi.replace(/^10\.1101\//i, "").replace(/v\d+$/i, "");
+        const doiForApi = `10.1101/${core}`;
+        const preferVersion = parseVersionSuffix(doi);
+        try {
+            const hitBx = await fetchBiorxivSourceXmlViaApi(doiForApi, {
+                UA,
+                preferVersion,
+            });
+            if (hitBx) {
+                const resolvedVersion = firstFiniteVersion(hitBx.version, extractVersionSuffix(hitBx.url), preferVersion);
+                return {
+                    type: "jats-xml",
+                    source: "biorxiv",
+                    content: hitBx.xml,
+                    url: hitBx.url,
+                    versionLabel: labelFromVersion(resolvedVersion),
+                };
+            }
+            const latestBx = await buildBiorxivLatestSourceXmlUrlViaApi(doiForApi, {
+                UA,
+                preferVersion,
+            });
+            if (latestBx?.url) {
+                const resolvedVersion = firstFiniteVersion(latestBx.version, extractVersionSuffix(latestBx.url), preferVersion);
+                return {
+                    type: "jats-xml",
+                    source: "biorxiv",
+                    url: latestBx.url,
+                    versionLabel: labelFromVersion(resolvedVersion),
+                };
+            }
+        }
+        catch { }
+        try {
+            const hitMx = await fetchMedrxivSourceXmlViaApi(doiForApi, {
+                UA,
+                preferVersion,
+            });
+            if (hitMx) {
+                const resolvedVersion = firstFiniteVersion(hitMx.version, extractVersionSuffix(hitMx.url), preferVersion);
+                return {
+                    type: "jats-xml",
+                    source: "medrxiv",
+                    content: hitMx.xml,
+                    url: hitMx.url,
+                    versionLabel: labelFromVersion(resolvedVersion),
+                };
+            }
+            const latestMx = await buildMedrxivLatestSourceXmlUrlViaApi(doiForApi, {
+                UA,
+                preferVersion,
+            });
+            if (latestMx?.url) {
+                const resolvedVersion = firstFiniteVersion(latestMx.version, extractVersionSuffix(latestMx.url), preferVersion);
+                return {
+                    type: "jats-xml",
+                    source: "medrxiv",
+                    url: latestMx.url,
+                    versionLabel: labelFromVersion(resolvedVersion),
+                };
+            }
+        }
+        catch { }
+        return {
+            type: "jats-xml",
+            source: "preprint",
+            url: `https://www.biorxiv.org/content/${doiForApi}.source.xml`,
+            versionLabel: labelFromVersion(preferVersion),
+        };
+    },
+};
+//# sourceMappingURL=ten1101.js.map

package/dist/works/strategies/ten1101.js.map

@@ -0,0 +1 @@
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package/dist/works/text/acquire-fulltext.d.ts

@@ -0,0 +1,7 @@
+import type { FullTextResult, CompleteIds, StrategyAttempt, LoggerLike } from "../types";
+export declare function getBestFullText(ids: CompleteIds, logger?: LoggerLike): Promise<FullTextResult | null>;
+export declare function getBestFullTextWithTrace(ids: CompleteIds, logger?: LoggerLike): Promise<{
+    result: FullTextResult | null;
+    trace: StrategyAttempt[];
+}>;
+//# sourceMappingURL=acquire-fulltext.d.ts.map

package/dist/works/text/acquire-fulltext.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"acquire-fulltext.d.ts","sourceRoot":"","sources":["../../../src/works/text/acquire-fulltext.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,cAAc,EACd,WAAW,EACX,eAAe,EACf,UAAU,EACX,MAAM,UAAU,CAAC;AA6ElB,wBAAsB,eAAe,CACnC,GAAG,EAAE,WAAW,EAChB,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAGhC;AAED,wBAAsB,wBAAwB,CAC5C,GAAG,EAAE,WAAW,EAChB,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC;IAAE,MAAM,EAAE,cAAc,GAAG,IAAI,CAAC;IAAC,KAAK,EAAE,eAAe,EAAE,CAAA;CAAE,CAAC,CAEtE"}