@mantra-ai/core 0.1.0

package/dist/normalization/jats/utils/po/nodes.js

@@ -0,0 +1,60 @@
+import { asString } from "../strings";
+export function poTagName(node) {
+    if (!node || typeof node !== "object" || Array.isArray(node))
+        return undefined;
+    const keys = Object.keys(node);
+    if (keys.length === 1)
+        return keys[0];
+    return keys.find((k) => k !== ":@");
+}
+export function poChildren(node) {
+    const name = poTagName(node);
+    if (!name)
+        return [];
+    // Never recurse into text nodes
+    if (name === "#text")
+        return [];
+    const v = node[name];
+    // Standard preserveOrder shape: children are an array
+    if (Array.isArray(v))
+        return v;
+    // Some inline nodes may collapse to a direct primitive value
+    // e.g., { "bold": "Text" } — surface it as a synthetic text child
+    if (typeof v === "string" || typeof v === "number") {
+        return [{ "#text": v }];
+    }
+    return [];
+}
+export function poIsTextNode(node) {
+    if (typeof node === "string" || typeof node === "number")
+        return true;
+    const name = poTagName(node);
+    return name === "#text";
+}
+export function poGetAttr(node, attr) {
+    // In preserveOrder mode, attributes live alongside the tag's children under a sibling
+    // key ":@". Do not traverse children; read the attribute bag directly.
+    if (!node || typeof node !== "object" || Array.isArray(node))
+        return undefined;
+    const bag = node[":@"];
+    if (!bag || typeof bag !== "object")
+        return undefined;
+    // Direct match (e.g., id or hwp:id)
+    const direct = bag[`@_${attr}`];
+    if (direct != null)
+        return asString(direct);
+    // Special-case hrefs which often appear under xlink namespace
+    if (attr === "href") {
+        const v2 = bag["@_xlink:href"] ?? bag["@_href"];
+        if (v2 != null)
+            return asString(v2);
+    }
+    return undefined;
+}
+export function poMatchesLocal(name, local) {
+    if (!name)
+        return false;
+    const nl = name.toLowerCase();
+    return nl === local || nl.endsWith(`:${local}`);
+}
+//# sourceMappingURL=nodes.js.map

package/dist/normalization/jats/utils/po/nodes.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"nodes.js","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/nodes.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAEtC,MAAM,UAAU,SAAS,CAAC,IAAS;IACjC,IAAI,CAAC,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC;QAC1D,OAAO,SAAS,CAAC;IACnB,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC/B,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC,CAAC,CAAC,CAAC;IACtC,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,IAAI,CAAuB,CAAC;AAC5D,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,IAAS;IAClC,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;IAC7B,IAAI,CAAC,IAAI;QAAE,OAAO,EAAE,CAAC;IACrB,gCAAgC;IAChC,IAAI,IAAI,KAAK,OAAO;QAAE,OAAO,EAAE,CAAC;IAChC,MAAM,CAAC,GAAI,IAAY,CAAC,IAAI,CAAC,CAAC;IAC9B,sDAAsD;IACtD,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAAE,OAAO,CAAC,CAAC;IAC/B,6DAA6D;IAC7D,kEAAkE;IAClE,IAAI,OAAO,CAAC,KAAK,QAAQ,IAAI,OAAO,CAAC,KAAK,QAAQ,EAAE,CAAC;QACnD,OAAO,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC;IAC1B,CAAC;IACD,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAAS;IACpC,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ;QAAE,OAAO,IAAI,CAAC;IACtE,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;IAC7B,OAAO,IAAI,KAAK,OAAO,CAAC;AAC1B,CAAC;AAED,MAAM,UAAU,SAAS,CAAC,IAAS,EAAE,IAAY;IAC/C,sFAAsF;IACtF,uEAAuE;IACvE,IAAI,CAAC,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC;QAC1D,OAAO,SAAS,CAAC;IACnB,MAAM,GAAG,GAAI,IAAY,CAAC,IAAI,CAAQ,CAAC;IACvC,IAAI,CAAC,GAAG,IAAI,OAAO,GAAG,KAAK,QAAQ;QAAE,OAAO,SAAS,CAAC;IACtD,oCAAoC;IACpC,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;IAChC,IAAI,MAAM,IAAI,IAAI;QAAE,OAAO,QAAQ,CAAC,MAAM,CAAC,CAAC;IAC5C,8DAA8D;IAC9D,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;QACpB,MAAM,EAAE,GAAG,GAAG,CAAC,cAAc,CAAC,IAAI,GAAG,CAAC,QAAQ,CAAC,CAAC;QAChD,IAAI,EAAE,IAAI,IAAI;YAAE,OAAO,QAAQ,CAAC,EAAE,CAAC,CAAC;IACtC,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,cAAc,CAC5B,IAAwB,EACxB,KAAa;IAEb,IAAI,CAAC,IAAI;QAAE,OAAO,KAAK,CAAC;IACxB,MAAM,EAAE,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;IAC9B,OAAO,EAAE,KAAK,KAAK,IAAI,EAAE,CAAC,QAAQ,CAAC,IAAI,KAAK,EAAE,CAAC,CAAC;AAClD,CAAC"}

package/dist/normalization/jats/utils/po/query.d.ts

@@ -0,0 +1,7 @@
+export declare function poFindFirstByLocal(root: any, local: string): any | undefined;
+export declare function poFindDescendantsByLocal(root: any, local: string): any[];
+export declare function poFindFirstByLocalAttr(root: any, local: string, attr: string, value: string): any | undefined;
+export declare function poFindSectionById(domPO: any, id: string): any | undefined;
+export declare function poChildSections(root: any): any[];
+export declare function getBodyNodePO(domPO: any): any | undefined;
+//# sourceMappingURL=query.d.ts.map

package/dist/normalization/jats/utils/po/query.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"query.d.ts","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/query.ts"],"names":[],"mappings":"AAEA,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,MAAM,GAAG,GAAG,GAAG,SAAS,CAU5E;AAED,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,MAAM,GAAG,GAAG,EAAE,CAWxE;AAED,wBAAgB,sBAAsB,CACpC,IAAI,EAAE,GAAG,EACT,KAAK,EAAE,MAAM,EACb,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,GAAG,GAAG,SAAS,CAOjB;AAED,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,MAAM,GAAG,GAAG,GAAG,SAAS,CAOzE;AAGD,wBAAgB,eAAe,CAAC,IAAI,EAAE,GAAG,GAAG,GAAG,EAAE,CAShD;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,GAAG,GAAG,GAAG,GAAG,SAAS,CAOzD"}

package/dist/normalization/jats/utils/po/query.js

@@ -0,0 +1,67 @@
+import { poTagName, poMatchesLocal, poChildren, poGetAttr } from "./nodes";
+export function poFindFirstByLocal(root, local) {
+    const stack = Array.isArray(root) ? [...root] : [root];
+    while (stack.length) {
+        const node = stack.shift();
+        const name = poTagName(node);
+        if (poMatchesLocal(name, local))
+            return node;
+        const children = poChildren(node);
+        for (const ch of children)
+            stack.push(ch);
+    }
+    return undefined;
+}
+export function poFindDescendantsByLocal(root, local) {
+    const out = [];
+    const stack = Array.isArray(root) ? [...root] : [root];
+    while (stack.length) {
+        const node = stack.shift();
+        const name = poTagName(node);
+        if (poMatchesLocal(name, local))
+            out.push(node);
+        const children = poChildren(node);
+        for (const ch of children)
+            stack.push(ch);
+    }
+    return out;
+}
+export function poFindFirstByLocalAttr(root, local, attr, value) {
+    const nodes = poFindDescendantsByLocal(root, local);
+    for (const n of nodes) {
+        const v = poGetAttr(n, attr);
+        if (v && v === value)
+            return n;
+    }
+    return undefined;
+}
+export function poFindSectionById(domPO, id) {
+    const secs = poFindDescendantsByLocal(domPO, "sec");
+    for (const s of secs) {
+        const sid = poGetAttr(s, "id") || poGetAttr(s, "hwp:id");
+        if (sid && sid === id)
+            return s;
+    }
+    return undefined;
+}
+// Direct child <sec> nodes of a PO node, in order
+export function poChildSections(root) {
+    const out = [];
+    const children = poChildren(root);
+    for (const ch of children) {
+        const nm = poTagName(ch);
+        const name = (nm || "").toLowerCase();
+        if (poMatchesLocal(name, "sec"))
+            out.push(ch);
+    }
+    return out;
+}
+export function getBodyNodePO(domPO) {
+    const article = poFindFirstByLocal(domPO, "article");
+    if (!article)
+        return undefined;
+    const body = poFindFirstByLocal(article, "body") ||
+        poFindFirstByLocal(article, "article-body");
+    return body;
+}
+//# sourceMappingURL=query.js.map

package/dist/normalization/jats/utils/po/query.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"query.js","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/query.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,cAAc,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AAE3E,MAAM,UAAU,kBAAkB,CAAC,IAAS,EAAE,KAAa;IACzD,MAAM,KAAK,GAAU,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IAC9D,OAAO,KAAK,CAAC,MAAM,EAAE,CAAC;QACpB,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC;QAC3B,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;QAC7B,IAAI,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QAC7C,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;QAClC,KAAK,MAAM,EAAE,IAAI,QAAQ;YAAE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC5C,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,IAAS,EAAE,KAAa;IAC/D,MAAM,GAAG,GAAU,EAAE,CAAC;IACtB,MAAM,KAAK,GAAU,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IAC9D,OAAO,KAAK,CAAC,MAAM,EAAE,CAAC;QACpB,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC;QAC3B,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;QAC7B,IAAI,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC;YAAE,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAChD,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;QAClC,KAAK,MAAM,EAAE,IAAI,QAAQ;YAAE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC5C,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,MAAM,UAAU,sBAAsB,CACpC,IAAS,EACT,KAAa,EACb,IAAY,EACZ,KAAa;IAEb,MAAM,KAAK,GAAG,wBAAwB,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IACpD,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;QACtB,MAAM,CAAC,GAAG,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;QAC7B,IAAI,CAAC,IAAI,CAAC,KAAK,KAAK;YAAE,OAAO,CAAC,CAAC;IACjC,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAU,EAAE,EAAU;IACtD,MAAM,IAAI,GAAG,wBAAwB,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACpD,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC;QACrB,MAAM,GAAG,GAAG,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,SAAS,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;QACzD,IAAI,GAAG,IAAI,GAAG,KAAK,EAAE;YAAE,OAAO,CAAC,CAAC;IAClC,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,kDAAkD;AAClD,MAAM,UAAU,eAAe,CAAC,IAAS;IACvC,MAAM,GAAG,GAAU,EAAE,CAAC;IACtB,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IAClC,KAAK,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;QAC1B,MAAM,EAAE,GAAG,SAAS,CAAC,EAAE,CAAC,CAAC;QACzB,MAAM,IAAI,GAAG,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QACtC,IAAI,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC;YAAE,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChD,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,KAAU;IACtC,MAAM,OAAO,GAAG,kBAAkB,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;IACrD,IAAI,CAAC,OAAO;QAAE,OAAO,SAAS,CAAC;IAC/B,MAAM,IAAI,GACR,kBAAkB,CAAC,OAAO,EAAE,MAAM,CAAC;QACnC,kBAAkB,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;IAC9C,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/normalization/jats/utils/po/serialize.d.ts

@@ -0,0 +1,4 @@
+export declare function poSerialize(node: any): string | undefined;
+export declare function poSerializeMinimal(node: any): string | undefined;
+export declare function poSerializeCitationMinimal(node: any): string | undefined;
+//# sourceMappingURL=serialize.d.ts.map

package/dist/normalization/jats/utils/po/serialize.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"serialize.d.ts","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/serialize.ts"],"names":[],"mappings":"AAyDA,wBAAgB,WAAW,CAAC,IAAI,EAAE,GAAG,GAAG,MAAM,GAAG,SAAS,CA0BzD;AAKD,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,GAAG,GAAG,MAAM,GAAG,SAAS,CAyKhE;AAGD,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,GAAG,GAAG,MAAM,GAAG,SAAS,CA+FxE"}

package/dist/normalization/jats/utils/po/serialize.js

@@ -0,0 +1,329 @@
+import { poTagName, poChildren, poMatchesLocal } from "./nodes";
+import { poGetAttr } from "./nodes";
+import { escapeXml } from "../strings";
+import { poFindFirstByLocal } from "./query";
+const STARTS_WITH_INLINE = /^<(?:bibliography|figure|table|supplementary|extlink)\b/i;
+const ENDS_WITH_INLINE_CLOSE = /<\/(?:bibliography|figure|table|supplementary|extlink)>\s*$/i;
+function joinWithBoundarySpaces(parts) {
+    let out = "";
+    for (let i = 0; i < parts.length; i++) {
+        const cur = parts[i] || "";
+        const next = parts[i + 1] || "";
+        out += cur;
+        if (!next)
+            continue;
+        const curLast = cur.slice(-1);
+        const nextFirst = next.slice(0, 1);
+        // Add space before an inline chunk if previous char isn't whitespace
+        const needSpaceBeforeInline = !/\s/.test(curLast) && STARTS_WITH_INLINE.test(next);
+        // Add space after an inline chunk if followed by a word-ish char
+        const needSpaceAfterInline = ENDS_WITH_INLINE_CLOSE.test(cur) &&
+            !/\s/.test(nextFirst) &&
+            /[A-Za-z0-9(]/.test(nextFirst);
+        // Ensure a space after comma/semicolon before another inline tag
+        const needSpaceAfterCommaBeforeInline = /[,;:]\s*$/.test(cur) && STARTS_WITH_INLINE.test(next);
+        // Do NOT add space if we’re right after an opening bracket/paren
+        const openingBracketNoSpace = /[\(\[\{]\s*$/.test(cur) && STARTS_WITH_INLINE.test(next);
+        // Do NOT add space if next token is a closing bracket/paren/punct
+        const closingPunctNoSpace = ENDS_WITH_INLINE_CLOSE.test(cur) && /^[)\]\},.;:]/.test(nextFirst);
+        if ((needSpaceBeforeInline ||
+            needSpaceAfterInline ||
+            needSpaceAfterCommaBeforeInline) &&
+            !openingBracketNoSpace &&
+            !closingPunctNoSpace) {
+            out += " ";
+        }
+    }
+    return out;
+}
+// Serialize a preserveOrder node back into XML (best-effort)
+export function poSerialize(node) {
+    const name = poTagName(node);
+    if (!name)
+        return undefined;
+    if (name === "#text") {
+        const v = node["#text"];
+        return v == null ? "" : String(v);
+    }
+    // Attribute bag lives under :@
+    const bag = node[":@"] || {};
+    const attrs = [];
+    for (const k of Object.keys(bag)) {
+        if (!k.startsWith("@_"))
+            continue;
+        const rawName = k.slice(2);
+        const val = bag[k];
+        if (val == null)
+            continue;
+        const esc = String(val)
+            .replace(/&/g, "&amp;")
+            .replace(/</g, "&lt;")
+            .replace(/\"/g, "&quot;");
+        attrs.push(`${rawName}="${esc}"`);
+    }
+    const attrStr = attrs.length ? " " + attrs.join(" ") : "";
+    const children = poChildren(node);
+    if (!children.length)
+        return `<${name}${attrStr}></${name}>`;
+    const inner = children.map((ch) => poSerialize(ch) ?? "").join("");
+    return `<${name}${attrStr}>${inner}</${name}>`;
+}
+// Serialize a node while unwrapping specific style tags.
+// Drop/unwrap: bold, italic, em, strong, underline, u, s/strike, small, big, font
+// Special-case br -> single space.
+export function poSerializeMinimal(node) {
+    const DROP_UNWRAP = [
+        "bold",
+        "italic",
+        "em",
+        "strong",
+        "underline",
+        "u",
+        "s",
+        "strike",
+        "small",
+        "big",
+        "font",
+    ];
+    function serializeRec(n) {
+        const name = poTagName(n);
+        if (!name)
+            return "";
+        if (name === "#text") {
+            const v = n["#text"];
+            return v == null ? "" : String(v);
+        }
+        // br -> space
+        if (poMatchesLocal(name, "br") ||
+            poMatchesLocal(name, "linebreak") ||
+            poMatchesLocal(name, "line-break")) {
+            return " ";
+        }
+        // Unwrap <sup> when it only wraps bibliography refs and punctuation (e.g., citation superscripts)
+        if (poMatchesLocal(name, "sup")) {
+            const onlyBiblioAndPunct = (node) => {
+                const nm = poTagName(node);
+                // Text nodes: allow only whitespace and punctuation/dashes/parentheses/brackets
+                if (!nm ||
+                    nm === "#text" ||
+                    typeof node === "string" ||
+                    typeof node === "number") {
+                    let raw = "";
+                    if (typeof node === "string" || typeof node === "number")
+                        raw = String(node);
+                    else if (node && typeof node === "object" && "#text" in node)
+                        raw = String(node["#text"] ?? "");
+                    // Normalize to make the test predictable
+                    const s = raw;
+                    // Allow whitespace and these punctuation: , . ; : - – — − ( ) [ ] and en/em dashes and non-breaking hyphen
+                    return /^[\s,.;:()\[\]\-–—−‑]+$/.test(s || "");
+                }
+                // Allow style wrappers by validating their children
+                if (DROP_UNWRAP.some((t) => poMatchesLocal(nm, t))) {
+                    const kids = poChildren(node);
+                    return kids.every((ch) => onlyBiblioAndPunct(ch));
+                }
+                // Allow xref bibliography only
+                if (poMatchesLocal(nm, "xref")) {
+                    const typ = (poGetAttr(node, "ref-type") ||
+                        poGetAttr(node, "ref_type") ||
+                        "").toLowerCase();
+                    return typ === "bibr";
+                }
+                return false;
+            };
+            const kids = poChildren(n);
+            if (kids.length && kids.every((ch) => onlyBiblioAndPunct(ch))) {
+                // Unwrap: serialize children directly (xref will map to <bibliography> below)
+                return kids.map((ch) => serializeRec(ch)).join("");
+            }
+            // Otherwise, keep <sup> as-is
+        }
+        // unwrap style-only wrappers
+        for (const local of DROP_UNWRAP) {
+            if (poMatchesLocal(name, local)) {
+                const children = poChildren(n);
+                return children.map((ch) => serializeRec(ch)).join("");
+            }
+        }
+        // Normalize a minimal subset of cross-reference/link tags to simpler forms
+        // - xref[ref-type=bibr] -> <bibliography target="RID">..</bibliography>
+        // - xref[ref-type=fig]  -> <figure target="RID">..</figure>
+        // - xref[ref-type=table|table-wrap] -> <table target="RID">..</table>
+        // - xref[ref-type=supplementary-material] -> <supplementary target="RID">..</supplementary>
+        // - ext-link -> <extlink href="...">..</extlink>
+        const escAttr = (val) => String(val)
+            .replace(/&/g, "&amp;")
+            .replace(/</g, "&lt;")
+            .replace(/\"/g, "&quot;");
+        if (poMatchesLocal(name, "xref")) {
+            const typ = (poGetAttr(n, "ref-type") ||
+                poGetAttr(n, "ref_type") ||
+                "").toLowerCase();
+            const rid = poGetAttr(n, "rid");
+            const inner = poChildren(n)
+                .map((ch) => serializeRec(ch))
+                .join("");
+            let tag;
+            if (typ === "bibr")
+                tag = "bibliography";
+            else if (typ === "fig" || typ === "figure")
+                tag = "figure";
+            else if (typ === "table" || typ === "table-wrap")
+                tag = "table";
+            else if (/supp(lementary)?-?material/.test(typ))
+                tag = "supplementary";
+            else if (typ === "supplementary" || typ === "supplement")
+                tag = "supplementary";
+            if (tag) {
+                const attrs = [];
+                if (rid)
+                    attrs.push(`target="${escAttr(rid)}"`);
+                const attrStr = attrs.length ? " " + attrs.join(" ") : "";
+                return `<${tag}${attrStr}>${inner}</${tag}>`;
+            }
+            // Otherwise, fall through to regular element serialization below
+        }
+        if (poMatchesLocal(name, "ext-link") ||
+            poMatchesLocal(name, "ext_link") ||
+            poMatchesLocal(name, "uri")) {
+            const href = poGetAttr(n, "href");
+            const inner = poChildren(n)
+                .map((ch) => serializeRec(ch))
+                .join("");
+            const attrStr = href ? ` href="${escAttr(href)}"` : "";
+            return `<extlink${attrStr}>${inner}</extlink>`;
+        }
+        // Regular element: serialize with attributes and children
+        const bag = n[":@"] || {};
+        const attrs = [];
+        for (const k of Object.keys(bag)) {
+            if (!k.startsWith("@_"))
+                continue;
+            const rawName = k.slice(2);
+            const val = bag[k];
+            if (val == null)
+                continue;
+            const esc = String(val)
+                .replace(/&/g, "&amp;")
+                .replace(/</g, "&lt;")
+                .replace(/\"/g, "&quot;");
+            attrs.push(`${rawName}="${esc}"`);
+        }
+        const attrStr = attrs.length ? " " + attrs.join(" ") : "";
+        const children = poChildren(n);
+        if (!children.length)
+            return `<${name}${attrStr}></${name}>`;
+        const rendered = children.map((ch) => serializeRec(ch) ?? "");
+        let inner = joinWithBoundarySpaces(rendered);
+        // Remove space after opening paren/bracket before an inline tag: "( <tag" -> "(<tag"
+        inner = inner.replace(/([(\[{])\s+(<(?:bibliography|figure|table|supplementary|extlink)\b)/g, "$1$2");
+        // Remove space before closing paren/bracket/punct after an inline tag: "</tag> )" -> "</tag>)"
+        inner = inner.replace(/(<\/(?:bibliography|figure|table|supplementary|extlink)>)\s+([)\]},.;:])/g, "$1$2");
+        inner = inner.replace(new RegExp(String.raw `(</(?:bibliography|figure|table|supplementary|extlink)>)\s*([,;:])\s*(<(?:bibliography|figure|table|supplementary|extlink)\b)`, "g"), "$1$2 $3");
+        return `<${name}${attrStr}>${inner}</${name}>`;
+    }
+    return serializeRec(node);
+}
+// Serialize a citation keeping only the tags useful for LLM parsing and dropping attributes and styling.
+export function poSerializeCitationMinimal(node) {
+    const ALLOWED = new Set([
+        // Core structure
+        "citation",
+        // People
+        "person-group",
+        "string-name",
+        "name",
+        "surname",
+        "given-names",
+        "prefix",
+        "suffix",
+        "collab",
+        "etal",
+        // Titles
+        "article-title",
+        "chapter-title",
+        "trans-title",
+        "trans-source",
+        // Container / source
+        "source",
+        "series",
+        "series-title",
+        "series-text",
+        "series-number",
+        // Publication ids and links
+        "pub-id",
+        "object-id",
+        "ext-link",
+        "extlink",
+        "uri",
+        // Publication info
+        "volume",
+        "issue",
+        "elocation-id",
+        "fpage",
+        "lpage",
+        "page-range",
+        "supplement",
+        // Date
+        "pub-date",
+        "year",
+        "month",
+        "day",
+        "season",
+        // Books / chapters / reports
+        "publisher-name",
+        "publisher-loc",
+        "edition",
+        // Conference proceedings
+        "conf-name",
+        "conf-loc",
+        "conf-date",
+        // Dataset / software
+        "data-title",
+        "version",
+        // Identifiers
+        "isbn",
+        "issn",
+        // Misc academic
+        "institution",
+    ]);
+    function ser(n, preserveText) {
+        const name = poTagName(n);
+        if (!name)
+            return "";
+        if (name === "#text") {
+            const s = String(n["#text"] ?? "");
+            const trimmed = s.trim();
+            if (!preserveText && /^[,.;:()\[\]{}–-]+$/.test(trimmed))
+                return "";
+            return escapeXml(s);
+        }
+        const local = (name || "").toLowerCase();
+        // Only keep allowed tags; otherwise inline their children
+        const children = poChildren(n);
+        // Special-case ext-link: if no inner text, materialize href as text
+        if (local === "ext-link" || local === "extlink") {
+            let innerText = children.map((ch) => ser(ch, true)).join("");
+            if (!innerText.trim()) {
+                const href = poGetAttr(n, "href");
+                if (href)
+                    innerText = escapeXml(href);
+            }
+            return `<extlink>${innerText}</extlink>`;
+        }
+        const inner = children
+            .map((ch) => ser(ch, ALLOWED.has(local) || preserveText))
+            .join("");
+        if (!ALLOWED.has(local))
+            return inner;
+        return `<${local}>${inner}</${local}>`;
+    }
+    const tag = poTagName(node);
+    const root = ALLOWED.has((tag || "").toLowerCase())
+        ? node
+        : poFindFirstByLocal(node, "citation") || node;
+    const xml = ser(root, false);
+    return xml || undefined;
+}
+//# sourceMappingURL=serialize.js.map

package/dist/normalization/jats/utils/po/serialize.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"serialize.js","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/serialize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,SAAS,CAAC;AAChE,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AACpC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AACvC,OAAO,EAAE,kBAAkB,EAAE,MAAM,SAAS,CAAC;AAE7C,MAAM,kBAAkB,GACtB,0DAA0D,CAAC;AAC7D,MAAM,sBAAsB,GAC1B,8DAA8D,CAAC;AAEjE,SAAS,sBAAsB,CAAC,KAAe;IAC7C,IAAI,GAAG,GAAG,EAAE,CAAC;IACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,GAAG,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QAC3B,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;QAChC,GAAG,IAAI,GAAG,CAAC;QACX,IAAI,CAAC,IAAI;YAAE,SAAS;QAEpB,MAAM,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAEnC,qEAAqE;QACrE,MAAM,qBAAqB,GACzB,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEvD,iEAAiE;QACjE,MAAM,oBAAoB,GACxB,sBAAsB,CAAC,IAAI,CAAC,GAAG,CAAC;YAChC,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC;YACrB,cAAc,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAEjC,iEAAiE;QACjE,MAAM,+BAA+B,GACnC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEzD,iEAAiE;QACjE,MAAM,qBAAqB,GACzB,cAAc,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAE5D,kEAAkE;QAClE,MAAM,mBAAmB,GACvB,sBAAsB,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,cAAc,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAErE,IACE,CAAC,qBAAqB;YACpB,oBAAoB;YACpB,+BAA+B,CAAC;YAClC,CAAC,qBAAqB;YACtB,CAAC,mBAAmB,EACpB,CAAC;YACD,GAAG,IAAI,GAAG,CAAC;QACb,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,6DAA6D;AAC7D,MAAM,UAAU,WAAW,CAAC,IAAS;IACnC,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;IAC7B,IAAI,CAAC,IAAI;QAAE,OAAO,SAAS,CAAC;IAC5B,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;QACrB,MAAM,CAAC,GAAI,IAAY,CAAC,OAAO,CAAC,CAAC;QACjC,OAAO,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IACpC,CAAC;IACD,+BAA+B;IAC/B,MAAM,GAAG,GAAI,IAAY,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;IACtC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QACjC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC;YAAE,SAAS;QAClC,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC3B,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC;QACnB,IAAI,GAAG,IAAI,IAAI;YAAE,SAAS;QAC1B,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC;aACpB,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC;aACtB,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC;aACrB,OAAO,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;QAC5B,KAAK,CAAC,IAAI,CAAC,GAAG,OAAO,KAAK,GAAG,GAAG,CAAC,CAAC;IACpC,CAAC;IACD,MAAM,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IAC1D,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IAClC,IAAI,CAAC,QAAQ,CAAC,MAAM;QAAE,OAAO,IAAI,IAAI,GAAG,OAAO,MAAM,IAAI,GAAG,CAAC;IAC7D,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACnE,OAAO,IAAI,IAAI,GAAG,OAAO,IAAI,KAAK,KAAK,IAAI,GAAG,CAAC;AACjD,CAAC;AAED,yDAAyD;AACzD,kFAAkF;AAClF,mCAAmC;AACnC,MAAM,UAAU,kBAAkB,CAAC,IAAS;IAC1C,MAAM,WAAW,GAAG;QAClB,MAAM;QACN,QAAQ;QACR,IAAI;QACJ,QAAQ;QACR,WAAW;QACX,GAAG;QACH,GAAG;QACH,QAAQ;QACR,OAAO;QACP,KAAK;QACL,MAAM;KACP,CAAC;IACF,SAAS,YAAY,CAAC,CAAM;QAC1B,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;QAC1B,IAAI,CAAC,IAAI;YAAE,OAAO,EAAE,CAAC;QACrB,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;YACrB,MAAM,CAAC,GAAI,CAAS,CAAC,OAAO,CAAC,CAAC;YAC9B,OAAO,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACpC,CAAC;QACD,cAAc;QACd,IACE,cAAc,CAAC,IAAI,EAAE,IAAI,CAAC;YAC1B,cAAc,CAAC,IAAI,EAAE,WAAW,CAAC;YACjC,cAAc,CAAC,IAAI,EAAE,YAAY,CAAC,EAClC,CAAC;YACD,OAAO,GAAG,CAAC;QACb,CAAC;QACD,kGAAkG;QAClG,IAAI,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,CAAC;YAChC,MAAM,kBAAkB,GAAG,CAAC,IAAS,EAAW,EAAE;gBAChD,MAAM,EAAE,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;gBAC3B,gFAAgF;gBAChF,IACE,CAAC,EAAE;oBACH,EAAE,KAAK,OAAO;oBACd,OAAO,IAAI,KAAK,QAAQ;oBACxB,OAAO,IAAI,KAAK,QAAQ,EACxB,CAAC;oBACD,IAAI,GAAG,GAAG,EAAE,CAAC;oBACb,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ;wBACtD,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC;yBAChB,IAAI,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,IAAI;wBAC1D,GAAG,GAAG,MAAM,CAAE,IAAY,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC;oBAC7C,yCAAyC;oBACzC,MAAM,CAAC,GAAG,GAAG,CAAC;oBACd,2GAA2G;oBAC3G,OAAO,yBAAyB,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;gBACjD,CAAC;gBACD,oDAAoD;gBACpD,IAAI,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,cAAc,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;oBACnD,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;oBAC9B,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,kBAAkB,CAAC,EAAE,CAAC,CAAC,CAAC;gBACpD,CAAC;gBACD,+BAA+B;gBAC/B,IAAI,cAAc,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,CAAC;oBAC/B,MAAM,GAAG,GAAG,CACV,SAAS,CAAC,IAAI,EAAE,UAAU,CAAC;wBAC3B,SAAS,CAAC,IAAI,EAAE,UAAU,CAAC;wBAC3B,EAAE,CACH,CAAC,WAAW,EAAE,CAAC;oBAChB,OAAO,GAAG,KAAK,MAAM,CAAC;gBACxB,CAAC;gBACD,OAAO,KAAK,CAAC;YACf,CAAC,CAAC;YACF,MAAM,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;YAC3B,IAAI,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,kBAAkB,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC;gBAC9D,8EAA8E;gBAC9E,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACrD,CAAC;YACD,8BAA8B;QAChC,CAAC;QACD,6BAA6B;QAC7B,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;YAChC,IAAI,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,CAAC;gBAChC,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;gBAC/B,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACzD,CAAC;QACH,CAAC;QACD,2EAA2E;QAC3E,wEAAwE;QACxE,4DAA4D;QAC5D,sEAAsE;QACtE,4FAA4F;QAC5F,iDAAiD;QACjD,MAAM,OAAO,GAAG,CAAC,GAAQ,EAAE,EAAE,CAC3B,MAAM,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC;aACtB,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC;aACrB,OAAO,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;QAC9B,IAAI,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,EAAE,CAAC;YACjC,MAAM,GAAG,GAAG,CACV,SAAS,CAAC,CAAC,EAAE,UAAU,CAAC;gBACxB,SAAS,CAAC,CAAC,EAAE,UAAU,CAAC;gBACxB,EAAE,CACH,CAAC,WAAW,EAAE,CAAC;YAChB,MAAM,GAAG,GAAG,SAAS,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;YAChC,MAAM,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC;iBACxB,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC;iBAC7B,IAAI,CAAC,EAAE,CAAC,CAAC;YACZ,IAAI,GAAuB,CAAC;YAC5B,IAAI,GAAG,KAAK,MAAM;gBAAE,GAAG,GAAG,cAAc,CAAC;iBACpC,IAAI,GAAG,KAAK,KAAK,IAAI,GAAG,KAAK,QAAQ;gBAAE,GAAG,GAAG,QAAQ,CAAC;iBACtD,IAAI,GAAG,KAAK,OAAO,IAAI,GAAG,KAAK,YAAY;gBAAE,GAAG,GAAG,OAAO,CAAC;iBAC3D,IAAI,4BAA4B,CAAC,IAAI,CAAC,GAAG,CAAC;gBAAE,GAAG,GAAG,eAAe,CAAC;iBAClE,IAAI,GAAG,KAAK,eAAe,IAAI,GAAG,KAAK,YAAY;gBACtD,GAAG,GAAG,eAAe,CAAC;YACxB,IAAI,GAAG,EAAE,CAAC;gBACR,MAAM,KAAK,GAAa,EAAE,CAAC;gBAC3B,IAAI,GAAG;oBAAE,KAAK,CAAC,IAAI,CAAC,WAAW,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;gBAChD,MAAM,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC1D,OAAO,IAAI,GAAG,GAAG,OAAO,IAAI,KAAK,KAAK,GAAG,GAAG,CAAC;YAC/C,CAAC;YACD,iEAAiE;QACnE,CAAC;QACD,IACE,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC;YAChC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC;YAChC,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC,EAC3B,CAAC;YACD,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;YAClC,MAAM,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC;iBACxB,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC;iBAC7B,IAAI,CAAC,EAAE,CAAC,CAAC;YACZ,MAAM,OAAO,GAAG,IAAI,CAAC,CAAC,CAAC,UAAU,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;YACvD,OAAO,WAAW,OAAO,IAAI,KAAK,YAAY,CAAC;QACjD,CAAC;QACD,0DAA0D;QAC1D,MAAM,GAAG,GAAI,CAAS,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;QACnC,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;YACjC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC;gBAAE,SAAS;YAClC,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YAC3B,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC;YACnB,IAAI,GAAG,IAAI,IAAI;gBAAE,SAAS;YAC1B,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC;iBACpB,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC;iBACtB,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC;iBACrB,OAAO,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;YAC5B,KAAK,CAAC,IAAI,CAAC,GAAG,OAAO,KAAK,GAAG,GAAG,CAAC,CAAC;QACpC,CAAC;QACD,MAAM,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAC1D,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAC/B,IAAI,CAAC,QAAQ,CAAC,MAAM;YAAE,OAAO,IAAI,IAAI,GAAG,OAAO,MAAM,IAAI,GAAG,CAAC;QAC7D,MAAM,QAAQ,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC;QAC9D,IAAI,KAAK,GAAG,sBAAsB,CAAC,QAAQ,CAAC,CAAC;QAE7C,qFAAqF;QACrF,KAAK,GAAG,KAAK,CAAC,OAAO,CACnB,sEAAsE,EACtE,MAAM,CACP,CAAC;QACF,+FAA+F;QAC/F,KAAK,GAAG,KAAK,CAAC,OAAO,CACnB,2EAA2E,EAC3E,MAAM,CACP,CAAC;QACF,KAAK,GAAG,KAAK,CAAC,OAAO,CACnB,IAAI,MAAM,CACR,MAAM,CAAC,GAAG,CAAA,+HAA+H,EACzI,GAAG,CACJ,EACD,SAAS,CACV,CAAC;QAEF,OAAO,IAAI,IAAI,GAAG,OAAO,IAAI,KAAK,KAAK,IAAI,GAAG,CAAC;IACjD,CAAC;IACD,OAAO,YAAY,CAAC,IAAI,CAAC,CAAC;AAC5B,CAAC;AAED,yGAAyG;AACzG,MAAM,UAAU,0BAA0B,CAAC,IAAS;IAClD,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC;QACtB,iBAAiB;QACjB,UAAU;QACV,SAAS;QACT,cAAc;QACd,aAAa;QACb,MAAM;QACN,SAAS;QACT,aAAa;QACb,QAAQ;QACR,QAAQ;QACR,QAAQ;QACR,MAAM;QACN,SAAS;QACT,eAAe;QACf,eAAe;QACf,aAAa;QACb,cAAc;QACd,qBAAqB;QACrB,QAAQ;QACR,QAAQ;QACR,cAAc;QACd,aAAa;QACb,eAAe;QACf,4BAA4B;QAC5B,QAAQ;QACR,WAAW;QACX,UAAU;QACV,SAAS;QACT,KAAK;QACL,mBAAmB;QACnB,QAAQ;QACR,OAAO;QACP,cAAc;QACd,OAAO;QACP,OAAO;QACP,YAAY;QACZ,YAAY;QACZ,OAAO;QACP,UAAU;QACV,MAAM;QACN,OAAO;QACP,KAAK;QACL,QAAQ;QACR,6BAA6B;QAC7B,gBAAgB;QAChB,eAAe;QACf,SAAS;QACT,yBAAyB;QACzB,WAAW;QACX,UAAU;QACV,WAAW;QACX,qBAAqB;QACrB,YAAY;QACZ,SAAS;QACT,cAAc;QACd,MAAM;QACN,MAAM;QACN,gBAAgB;QAChB,aAAa;KACd,CAAC,CAAC;IACH,SAAS,GAAG,CAAC,CAAM,EAAE,YAAqB;QACxC,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;QAC1B,IAAI,CAAC,IAAI;YAAE,OAAO,EAAE,CAAC;QACrB,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;YACrB,MAAM,CAAC,GAAG,MAAM,CAAE,CAAS,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC;YAC5C,MAAM,OAAO,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;YACzB,IAAI,CAAC,YAAY,IAAI,qBAAqB,CAAC,IAAI,CAAC,OAAO,CAAC;gBAAE,OAAO,EAAE,CAAC;YACpE,OAAO,SAAS,CAAC,CAAC,CAAC,CAAC;QACtB,CAAC;QACD,MAAM,KAAK,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QACzC,0DAA0D;QAC1D,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QAC/B,oEAAoE;QACpE,IAAI,KAAK,KAAK,UAAU,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YAChD,IAAI,SAAS,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YAC7D,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,CAAC;gBACtB,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;gBAClC,IAAI,IAAI;oBAAE,SAAS,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;YACxC,CAAC;YACD,OAAO,YAAY,SAAS,YAAY,CAAC;QAC3C,CAAC;QACD,MAAM,KAAK,GAAG,QAAQ;aACnB,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,YAAY,CAAC,CAAC;aACxD,IAAI,CAAC,EAAE,CAAC,CAAC;QACZ,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;YAAE,OAAO,KAAK,CAAC;QACtC,OAAO,IAAI,KAAK,IAAI,KAAK,KAAK,KAAK,GAAG,CAAC;IACzC,CAAC;IACD,MAAM,GAAG,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC;IAC5B,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QACjD,CAAC,CAAC,IAAI;QACN,CAAC,CAAC,kBAAkB,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,IAAI,CAAC;IACjD,MAAM,GAAG,GAAG,GAAG,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IAC7B,OAAO,GAAG,IAAI,SAAS,CAAC;AAC1B,CAAC"}

package/dist/normalization/jats/utils/po/text.d.ts

@@ -0,0 +1,7 @@
+export declare function poText(node: any): string | undefined;
+export declare function poCollectSectionTexts(secPO: any): {
+    paragraphs: string[];
+    captions: string[];
+};
+export declare function poCollectParagraphNodesUnder(root: any): any[];
+//# sourceMappingURL=text.d.ts.map

package/dist/normalization/jats/utils/po/text.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"text.d.ts","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/text.ts"],"names":[],"mappings":"AAGA,wBAAgB,MAAM,CAAC,IAAI,EAAE,GAAG,GAAG,MAAM,GAAG,SAAS,CA+BpD;AAED,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,GAAG,GAAG;IACjD,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB,CA+CA;AAGD,wBAAgB,4BAA4B,CAAC,IAAI,EAAE,GAAG,GAAG,GAAG,EAAE,CAkB7D"}

package/dist/normalization/jats/utils/po/text.js

@@ -0,0 +1,114 @@
+import { poTagName, poChildren, poIsTextNode, poMatchesLocal } from "./nodes";
+import { decodeEntities } from "../strings";
+export function poText(node) {
+    const parts = [];
+    const rec = (n) => {
+        if (n == null)
+            return;
+        if (typeof n === "string" || typeof n === "number") {
+            const s = String(n).trim();
+            if (s)
+                parts.push(s);
+            return;
+        }
+        if (Array.isArray(n)) {
+            for (const it of n)
+                rec(it);
+            return;
+        }
+        if (typeof n === "object") {
+            const name = poTagName(n);
+            if (name === "#text") {
+                const v = n["#text"];
+                if (v != null) {
+                    const s = String(v).trim();
+                    if (s)
+                        parts.push(s);
+                }
+                return;
+            }
+            const children = poChildren(n);
+            for (const ch of children)
+                rec(ch);
+            return;
+        }
+    };
+    rec(node);
+    if (!parts.length)
+        return undefined;
+    return decodeEntities(parts.join(" ").replace(/\s+/g, " ").trim());
+}
+export function poCollectSectionTexts(secPO) {
+    const paras = [];
+    const caps = [];
+    const push = (s, toCaps = false) => {
+        if (!s)
+            return;
+        const t = s.trim();
+        if (!t)
+            return;
+        if (toCaps)
+            caps.push(t);
+        else
+            paras.push(t);
+    };
+    const walk = (node, ancestors) => {
+        const children = poChildren(node);
+        for (const ch of children) {
+            const nm = poTagName(ch);
+            const name = (nm || "").toLowerCase();
+            // Capture direct stray text under section-like containers, but not under titles/captions
+            if (poIsTextNode(ch)) {
+                const parent = (ancestors[ancestors.length - 1] || "").toLowerCase();
+                const ban = new Set(["title", "caption", "label"]);
+                // Only capture stray text from boxed-text; avoid grabbing raw text directly under <sec>
+                if (!ban.has(parent) && parent === "boxed-text") {
+                    const t = poText(ch);
+                    push(t || undefined);
+                }
+                continue;
+            }
+            if (poMatchesLocal(name, "p")) {
+                push(poText(poChildren(ch)) || poText(ch));
+                // do not recurse into <p> to avoid duplicating inline text
+                continue;
+            }
+            // Skip lists and figures to avoid injecting non-paragraph content out of place
+            if (poMatchesLocal(name, "list") ||
+                poMatchesLocal(name, "fig") ||
+                poMatchesLocal(name, "table-wrap") ||
+                poMatchesLocal(name, "def-list") ||
+                poMatchesLocal(name, "disp-formula")) {
+                continue;
+            }
+            // Avoid descending into nested sec boundaries here; subsections handled separately
+            if (!poMatchesLocal(name, "sec"))
+                walk(ch, ancestors.concat(name || ""));
+        }
+    };
+    walk(secPO, ["sec"]);
+    return { paragraphs: paras, captions: caps };
+}
+// Collect descendant <p> nodes under a container, in order, while skipping nested <sec> blocks
+export function poCollectParagraphNodesUnder(root) {
+    const out = [];
+    const walk = (node) => {
+        const children = poChildren(node);
+        for (const ch of children) {
+            const nm = poTagName(ch);
+            if (!nm)
+                continue;
+            if (poMatchesLocal(nm, "p")) {
+                out.push(ch);
+                // do not recurse into <p>
+                continue;
+            }
+            if (poMatchesLocal(nm, "sec"))
+                continue; // skip nested sections
+            walk(ch);
+        }
+    };
+    walk(root);
+    return out;
+}
+//# sourceMappingURL=text.js.map

package/dist/normalization/jats/utils/po/text.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"text.js","sourceRoot":"","sources":["../../../../../src/normalization/jats/utils/po/text.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,SAAS,CAAC;AAC9E,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE5C,MAAM,UAAU,MAAM,CAAC,IAAS;IAC9B,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,GAAG,GAAG,CAAC,CAAM,EAAE,EAAE;QACrB,IAAI,CAAC,IAAI,IAAI;YAAE,OAAO;QACtB,IAAI,OAAO,CAAC,KAAK,QAAQ,IAAI,OAAO,CAAC,KAAK,QAAQ,EAAE,CAAC;YACnD,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YAC3B,IAAI,CAAC;gBAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;QACD,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC;YACrB,KAAK,MAAM,EAAE,IAAI,CAAC;gBAAE,GAAG,CAAC,EAAE,CAAC,CAAC;YAC5B,OAAO;QACT,CAAC;QACD,IAAI,OAAO,CAAC,KAAK,QAAQ,EAAE,CAAC;YAC1B,MAAM,IAAI,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;YAC1B,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;gBACrB,MAAM,CAAC,GAAI,CAAS,CAAC,OAAO,CAAC,CAAC;gBAC9B,IAAI,CAAC,IAAI,IAAI,EAAE,CAAC;oBACd,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;oBAC3B,IAAI,CAAC;wBAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;gBACvB,CAAC;gBACD,OAAO;YACT,CAAC;YACD,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;YAC/B,KAAK,MAAM,EAAE,IAAI,QAAQ;gBAAE,GAAG,CAAC,EAAE,CAAC,CAAC;YACnC,OAAO;QACT,CAAC;IACH,CAAC,CAAC;IACF,GAAG,CAAC,IAAI,CAAC,CAAC;IACV,IAAI,CAAC,KAAK,CAAC,MAAM;QAAE,OAAO,SAAS,CAAC;IACpC,OAAO,cAAc,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;AACrE,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAU;IAI9C,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,IAAI,GAAa,EAAE,CAAC;IAC1B,MAAM,IAAI,GAAG,CAAC,CAAU,EAAE,MAAM,GAAG,KAAK,EAAE,EAAE;QAC1C,IAAI,CAAC,CAAC;YAAE,OAAO;QACf,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;QACnB,IAAI,CAAC,CAAC;YAAE,OAAO;QACf,IAAI,MAAM;YAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;;YACpB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACrB,CAAC,CAAC;IACF,MAAM,IAAI,GAAG,CAAC,IAAS,EAAE,SAAmB,EAAE,EAAE;QAC9C,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;QAClC,KAAK,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;YAC1B,MAAM,EAAE,GAAG,SAAS,CAAC,EAAE,CAAC,CAAC;YACzB,MAAM,IAAI,GAAG,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;YACtC,yFAAyF;YACzF,IAAI,YAAY,CAAC,EAAE,CAAC,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,CAAC,SAAS,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;gBACrE,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,CAAC,OAAO,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC,CAAC;gBACnD,wFAAwF;gBACxF,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,MAAM,KAAK,YAAY,EAAE,CAAC;oBAChD,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,CAAC,CAAC;oBACrB,IAAI,CAAC,CAAC,IAAI,SAAS,CAAC,CAAC;gBACvB,CAAC;gBACD,SAAS;YACX,CAAC;YACD,IAAI,cAAc,CAAC,IAAI,EAAE,GAAG,CAAC,EAAE,CAAC;gBAC9B,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC3C,2DAA2D;gBAC3D,SAAS;YACX,CAAC;YACD,+EAA+E;YAC/E,IACE,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC;gBAC5B,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC;gBAC3B,cAAc,CAAC,IAAI,EAAE,YAAY,CAAC;gBAClC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC;gBAChC,cAAc,CAAC,IAAI,EAAE,cAAc,CAAC,EACpC,CAAC;gBACD,SAAS;YACX,CAAC;YACD,mFAAmF;YACnF,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE,KAAK,CAAC;gBAAE,IAAI,CAAC,EAAE,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,CAAC;QAC3E,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC;IACrB,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;AAC/C,CAAC;AAED,+FAA+F;AAC/F,MAAM,UAAU,4BAA4B,CAAC,IAAS;IACpD,MAAM,GAAG,GAAU,EAAE,CAAC;IACtB,MAAM,IAAI,GAAG,CAAC,IAAS,EAAE,EAAE;QACzB,MAAM,QAAQ,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;QAClC,KAAK,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;YAC1B,MAAM,EAAE,GAAG,SAAS,CAAC,EAAE,CAAC,CAAC;YACzB,IAAI,CAAC,EAAE;gBAAE,SAAS;YAClB,IAAI,cAAc,CAAC,EAAE,EAAE,GAAG,CAAC,EAAE,CAAC;gBAC5B,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACb,0BAA0B;gBAC1B,SAAS;YACX,CAAC;YACD,IAAI,cAAc,CAAC,EAAE,EAAE,KAAK,CAAC;gBAAE,SAAS,CAAC,uBAAuB;YAChE,IAAI,CAAC,EAAE,CAAC,CAAC;QACX,CAAC;IACH,CAAC,CAAC;IACF,IAAI,CAAC,IAAI,CAAC,CAAC;IACX,OAAO,GAAG,CAAC;AACb,CAAC"}