@jbrowse/product-core 3.5.0 → 3.5.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +42 -70
  2. package/dist/Session/MultipleViews.d.ts +132 -220
  3. package/dist/Session/SessionTracks.d.ts +132 -220
  4. package/dist/Session/Tracks.d.ts +132 -220
  5. package/esm/RootModel/BaseRootModel.d.ts +42 -70
  6. package/esm/Session/MultipleViews.d.ts +132 -220
  7. package/esm/Session/SessionTracks.d.ts +132 -220
  8. package/esm/Session/Tracks.d.ts +132 -220
  9. package/package.json +3 -3
package/esm/Session/Tracks.d.ts CHANGED
@@ -23,18 +23,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -49,22 +49,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -84,6 +79,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -93,18 +89,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -119,22 +115,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -154,6 +145,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  readonly assemblyNameMap: Record<string, {
@@ -165,18 +157,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -191,22 +183,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -226,6 +213,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -235,18 +223,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -261,22 +249,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -296,6 +279,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & {
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  get(asmName: string): ({
@@ -307,18 +291,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -333,22 +317,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -368,6 +347,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
368
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -377,18 +357,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
365
+ } | undefined;
386
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -403,22 +383,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
403
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  getRefNameColor(refName: string): string | undefined;
404
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  isValidRefName(refName: string): boolean;
405
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  } & {
406
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
386
+ setLoaded({ regions, refNameAliases, cytobands, }: {
407
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  regions: import("@jbrowse/core/util").Region[];
408
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  refNameAliases: {
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  [x: string]: string;
410
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  };
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- lowerCaseRefNameAliases: {
412
- [x: string]: string;
413
- };
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  cytobands: import("@jbrowse/core/util").Feature[];
415
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
418
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  setRefNameAliases(aliases: {
419
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  [x: string]: string;
420
- }, lowerCaseAliases: {
421
- [x: string]: string;
422
397
  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
424
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  setLoadingP(p?: Promise<void>): void;
@@ -438,6 +413,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
438
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
439
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  [x: string]: string;
440
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  }>;
416
+ afterCreate(): void;
441
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
442
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  readonly assemblyNamesList: any[];
443
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  readonly assemblyList: AnyConfigurationModel[];
@@ -452,18 +428,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
452
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  refNameAliases: {
453
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  [x: string]: string;
454
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  } | undefined;
455
- lowerCaseRefNameAliases: {
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- [x: string]: string;
457
- } | undefined;
458
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
459
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  } & {
460
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  getConf(arg: string): any;
434
+ readonly lowerCaseRefNameAliases: {
435
+ [k: string]: string;
436
+ } | undefined;
461
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  } & {
462
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  readonly initialized: boolean;
463
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
465
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  readonly aliases: string[];
466
- readonly displayName: string | undefined;
442
+ readonly displayName: string;
467
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  hasName(name: string): boolean;
468
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  readonly allAliases: string[];
469
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  readonly allRefNames: string[] | undefined;
@@ -478,22 +454,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
478
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  getRefNameColor(refName: string): string | undefined;
479
455
  isValidRefName(refName: string): boolean;
480
456
  } & {
481
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
457
+ setLoaded({ regions, refNameAliases, cytobands, }: {
482
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  regions: import("@jbrowse/core/util").Region[];
483
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  refNameAliases: {
484
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  [x: string]: string;
485
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  };
486
- lowerCaseRefNameAliases: {
487
- [x: string]: string;
488
- };
489
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  cytobands: import("@jbrowse/core/util").Feature[];
490
463
  }): void;
491
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  setError(e: unknown): void;
492
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
493
466
  setRefNameAliases(aliases: {
494
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  [x: string]: string;
495
- }, lowerCaseAliases: {
496
- [x: string]: string;
497
468
  }): void;
498
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
499
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  setLoadingP(p?: Promise<void>): void;
@@ -513,6 +484,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
513
484
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
514
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  [x: string]: string;
515
486
  }>;
487
+ afterCreate(): void;
516
488
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
517
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
518
490
  }, {
@@ -522,18 +494,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
522
494
  refNameAliases: {
523
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  [x: string]: string;
524
496
  } | undefined;
525
- lowerCaseRefNameAliases: {
526
- [x: string]: string;
527
- } | undefined;
528
497
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
529
498
  } & {
530
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  getConf(arg: string): any;
500
+ readonly lowerCaseRefNameAliases: {
501
+ [k: string]: string;
502
+ } | undefined;
531
503
  } & {
532
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  readonly initialized: boolean;
533
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  readonly name: string;
534
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
535
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  readonly aliases: string[];
536
- readonly displayName: string | undefined;
508
+ readonly displayName: string;
537
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  hasName(name: string): boolean;
538
510
  readonly allAliases: string[];
539
511
  readonly allRefNames: string[] | undefined;
@@ -548,22 +520,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
548
520
  getRefNameColor(refName: string): string | undefined;
549
521
  isValidRefName(refName: string): boolean;
550
522
  } & {
551
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
523
+ setLoaded({ regions, refNameAliases, cytobands, }: {
552
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  regions: import("@jbrowse/core/util").Region[];
553
525
  refNameAliases: {
554
526
  [x: string]: string;
555
527
  };
556
- lowerCaseRefNameAliases: {
557
- [x: string]: string;
558
- };
559
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  cytobands: import("@jbrowse/core/util").Feature[];
560
529
  }): void;
561
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  setError(e: unknown): void;
562
531
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
563
532
  setRefNameAliases(aliases: {
564
533
  [x: string]: string;
565
- }, lowerCaseAliases: {
566
- [x: string]: string;
567
534
  }): void;
568
535
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
569
536
  setLoadingP(p?: Promise<void>): void;
@@ -583,6 +550,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
583
550
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
584
551
  [x: string]: string;
585
552
  }>;
553
+ afterCreate(): void;
586
554
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
587
555
  getRefNameMapForAdapter(adapterConf: {
588
556
  [x: string]: unknown;
@@ -615,18 +583,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
615
583
  refNameAliases: {
616
584
  [x: string]: string;
617
585
  } | undefined;
618
- lowerCaseRefNameAliases: {
619
- [x: string]: string;
620
- } | undefined;
621
586
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
622
587
  } & {
623
588
  getConf(arg: string): any;
589
+ readonly lowerCaseRefNameAliases: {
590
+ [k: string]: string;
591
+ } | undefined;
624
592
  } & {
625
593
  readonly initialized: boolean;
626
594
  readonly name: string;
627
595
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
628
596
  readonly aliases: string[];
629
- readonly displayName: string | undefined;
597
+ readonly displayName: string;
630
598
  hasName(name: string): boolean;
631
599
  readonly allAliases: string[];
632
600
  readonly allRefNames: string[] | undefined;
@@ -641,22 +609,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
641
609
  getRefNameColor(refName: string): string | undefined;
642
610
  isValidRefName(refName: string): boolean;
643
611
  } & {
644
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
612
+ setLoaded({ regions, refNameAliases, cytobands, }: {
645
613
  regions: import("@jbrowse/core/util").Region[];
646
614
  refNameAliases: {
647
615
  [x: string]: string;
648
616
  };
649
- lowerCaseRefNameAliases: {
650
- [x: string]: string;
651
- };
652
617
  cytobands: import("@jbrowse/core/util").Feature[];
653
618
  }): void;
654
619
  setError(e: unknown): void;
655
620
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
656
621
  setRefNameAliases(aliases: {
657
622
  [x: string]: string;
658
- }, lowerCaseAliases: {
659
- [x: string]: string;
660
623
  }): void;
661
624
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
662
625
  setLoadingP(p?: Promise<void>): void;
@@ -676,6 +639,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
676
639
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
677
640
  [x: string]: string;
678
641
  }>;
642
+ afterCreate(): void;
679
643
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
680
644
  }, {
681
645
  readonly assemblyNameMap: Record<string, {
@@ -687,18 +651,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
687
651
  refNameAliases: {
688
652
  [x: string]: string;
689
653
  } | undefined;
690
- lowerCaseRefNameAliases: {
691
- [x: string]: string;
692
- } | undefined;
693
654
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
694
655
  } & {
695
656
  getConf(arg: string): any;
657
+ readonly lowerCaseRefNameAliases: {
658
+ [k: string]: string;
659
+ } | undefined;
696
660
  } & {
697
661
  readonly initialized: boolean;
698
662
  readonly name: string;
699
663
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
700
664
  readonly aliases: string[];
701
- readonly displayName: string | undefined;
665
+ readonly displayName: string;
702
666
  hasName(name: string): boolean;
703
667
  readonly allAliases: string[];
704
668
  readonly allRefNames: string[] | undefined;
@@ -713,22 +677,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
713
677
  getRefNameColor(refName: string): string | undefined;
714
678
  isValidRefName(refName: string): boolean;
715
679
  } & {
716
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
680
+ setLoaded({ regions, refNameAliases, cytobands, }: {
717
681
  regions: import("@jbrowse/core/util").Region[];
718
682
  refNameAliases: {
719
683
  [x: string]: string;
720
684
  };
721
- lowerCaseRefNameAliases: {
722
- [x: string]: string;
723
- };
724
685
  cytobands: import("@jbrowse/core/util").Feature[];
725
686
  }): void;
726
687
  setError(e: unknown): void;
727
688
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
728
689
  setRefNameAliases(aliases: {
729
690
  [x: string]: string;
730
- }, lowerCaseAliases: {
731
- [x: string]: string;
732
691
  }): void;
733
692
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
734
693
  setLoadingP(p?: Promise<void>): void;
@@ -748,6 +707,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
748
707
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
749
708
  [x: string]: string;
750
709
  }>;
710
+ afterCreate(): void;
751
711
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
752
712
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
753
713
  }, {
@@ -757,18 +717,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
757
717
  refNameAliases: {
758
718
  [x: string]: string;
759
719
  } | undefined;
760
- lowerCaseRefNameAliases: {
761
- [x: string]: string;
762
- } | undefined;
763
720
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
764
721
  } & {
765
722
  getConf(arg: string): any;
723
+ readonly lowerCaseRefNameAliases: {
724
+ [k: string]: string;
725
+ } | undefined;
766
726
  } & {
767
727
  readonly initialized: boolean;
768
728
  readonly name: string;
769
729
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
770
730
  readonly aliases: string[];
771
- readonly displayName: string | undefined;
731
+ readonly displayName: string;
772
732
  hasName(name: string): boolean;
773
733
  readonly allAliases: string[];
774
734
  readonly allRefNames: string[] | undefined;
@@ -783,22 +743,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
783
743
  getRefNameColor(refName: string): string | undefined;
784
744
  isValidRefName(refName: string): boolean;
785
745
  } & {
786
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
746
+ setLoaded({ regions, refNameAliases, cytobands, }: {
787
747
  regions: import("@jbrowse/core/util").Region[];
788
748
  refNameAliases: {
789
749
  [x: string]: string;
790
750
  };
791
- lowerCaseRefNameAliases: {
792
- [x: string]: string;
793
- };
794
751
  cytobands: import("@jbrowse/core/util").Feature[];
795
752
  }): void;
796
753
  setError(e: unknown): void;
797
754
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
798
755
  setRefNameAliases(aliases: {
799
756
  [x: string]: string;
800
- }, lowerCaseAliases: {
801
- [x: string]: string;
802
757
  }): void;
803
758
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
804
759
  setLoadingP(p?: Promise<void>): void;
@@ -818,6 +773,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
818
773
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
819
774
  [x: string]: string;
820
775
  }>;
776
+ afterCreate(): void;
821
777
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
822
778
  } & {
823
779
  get(asmName: string): ({
@@ -829,18 +785,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
829
785
  refNameAliases: {
830
786
  [x: string]: string;
831
787
  } | undefined;
832
- lowerCaseRefNameAliases: {
833
- [x: string]: string;
834
- } | undefined;
835
788
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
836
789
  } & {
837
790
  getConf(arg: string): any;
791
+ readonly lowerCaseRefNameAliases: {
792
+ [k: string]: string;
793
+ } | undefined;
838
794
  } & {
839
795
  readonly initialized: boolean;
840
796
  readonly name: string;
841
797
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
842
798
  readonly aliases: string[];
843
- readonly displayName: string | undefined;
799
+ readonly displayName: string;
844
800
  hasName(name: string): boolean;
845
801
  readonly allAliases: string[];
846
802
  readonly allRefNames: string[] | undefined;
@@ -855,22 +811,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
855
811
  getRefNameColor(refName: string): string | undefined;
856
812
  isValidRefName(refName: string): boolean;
857
813
  } & {
858
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
814
+ setLoaded({ regions, refNameAliases, cytobands, }: {
859
815
  regions: import("@jbrowse/core/util").Region[];
860
816
  refNameAliases: {
861
817
  [x: string]: string;
862
818
  };
863
- lowerCaseRefNameAliases: {
864
- [x: string]: string;
865
- };
866
819
  cytobands: import("@jbrowse/core/util").Feature[];
867
820
  }): void;
868
821
  setError(e: unknown): void;
869
822
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
870
823
  setRefNameAliases(aliases: {
871
824
  [x: string]: string;
872
- }, lowerCaseAliases: {
873
- [x: string]: string;
874
825
  }): void;
875
826
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
876
827
  setLoadingP(p?: Promise<void>): void;
@@ -890,6 +841,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
890
841
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
891
842
  [x: string]: string;
892
843
  }>;
844
+ afterCreate(): void;
893
845
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
894
846
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
895
847
  }, {
@@ -899,18 +851,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
899
851
  refNameAliases: {
900
852
  [x: string]: string;
901
853
  } | undefined;
902
- lowerCaseRefNameAliases: {
903
- [x: string]: string;
904
- } | undefined;
905
854
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
906
855
  } & {
907
856
  getConf(arg: string): any;
857
+ readonly lowerCaseRefNameAliases: {
858
+ [k: string]: string;
859
+ } | undefined;
908
860
  } & {
909
861
  readonly initialized: boolean;
910
862
  readonly name: string;
911
863
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
912
864
  readonly aliases: string[];
913
- readonly displayName: string | undefined;
865
+ readonly displayName: string;
914
866
  hasName(name: string): boolean;
915
867
  readonly allAliases: string[];
916
868
  readonly allRefNames: string[] | undefined;
@@ -925,22 +877,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
925
877
  getRefNameColor(refName: string): string | undefined;
926
878
  isValidRefName(refName: string): boolean;
927
879
  } & {
928
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
880
+ setLoaded({ regions, refNameAliases, cytobands, }: {
929
881
  regions: import("@jbrowse/core/util").Region[];
930
882
  refNameAliases: {
931
883
  [x: string]: string;
932
884
  };
933
- lowerCaseRefNameAliases: {
934
- [x: string]: string;
935
- };
936
885
  cytobands: import("@jbrowse/core/util").Feature[];
937
886
  }): void;
938
887
  setError(e: unknown): void;
939
888
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
940
889
  setRefNameAliases(aliases: {
941
890
  [x: string]: string;
942
- }, lowerCaseAliases: {
943
- [x: string]: string;
944
891
  }): void;
945
892
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
946
893
  setLoadingP(p?: Promise<void>): void;
@@ -960,6 +907,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
960
907
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
961
908
  [x: string]: string;
962
909
  }>;
910
+ afterCreate(): void;
963
911
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
964
912
  readonly assemblyNamesList: any[];
965
913
  readonly assemblyList: AnyConfigurationModel[];
@@ -974,18 +922,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
974
922
  refNameAliases: {
975
923
  [x: string]: string;
976
924
  } | undefined;
977
- lowerCaseRefNameAliases: {
978
- [x: string]: string;
979
- } | undefined;
980
925
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
981
926
  } & {
982
927
  getConf(arg: string): any;
928
+ readonly lowerCaseRefNameAliases: {
929
+ [k: string]: string;
930
+ } | undefined;
983
931
  } & {
984
932
  readonly initialized: boolean;
985
933
  readonly name: string;
986
934
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
987
935
  readonly aliases: string[];
988
- readonly displayName: string | undefined;
936
+ readonly displayName: string;
989
937
  hasName(name: string): boolean;
990
938
  readonly allAliases: string[];
991
939
  readonly allRefNames: string[] | undefined;
@@ -1000,22 +948,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1000
948
  getRefNameColor(refName: string): string | undefined;
1001
949
  isValidRefName(refName: string): boolean;
1002
950
  } & {
1003
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
951
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1004
952
  regions: import("@jbrowse/core/util").Region[];
1005
953
  refNameAliases: {
1006
954
  [x: string]: string;
1007
955
  };
1008
- lowerCaseRefNameAliases: {
1009
- [x: string]: string;
1010
- };
1011
956
  cytobands: import("@jbrowse/core/util").Feature[];
1012
957
  }): void;
1013
958
  setError(e: unknown): void;
1014
959
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1015
960
  setRefNameAliases(aliases: {
1016
961
  [x: string]: string;
1017
- }, lowerCaseAliases: {
1018
- [x: string]: string;
1019
962
  }): void;
1020
963
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1021
964
  setLoadingP(p?: Promise<void>): void;
@@ -1035,6 +978,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1035
978
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1036
979
  [x: string]: string;
1037
980
  }>;
981
+ afterCreate(): void;
1038
982
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1039
983
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1040
984
  }, {
@@ -1044,18 +988,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1044
988
  refNameAliases: {
1045
989
  [x: string]: string;
1046
990
  } | undefined;
1047
- lowerCaseRefNameAliases: {
1048
- [x: string]: string;
1049
- } | undefined;
1050
991
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1051
992
  } & {
1052
993
  getConf(arg: string): any;
994
+ readonly lowerCaseRefNameAliases: {
995
+ [k: string]: string;
996
+ } | undefined;
1053
997
  } & {
1054
998
  readonly initialized: boolean;
1055
999
  readonly name: string;
1056
1000
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1057
1001
  readonly aliases: string[];
1058
- readonly displayName: string | undefined;
1002
+ readonly displayName: string;
1059
1003
  hasName(name: string): boolean;
1060
1004
  readonly allAliases: string[];
1061
1005
  readonly allRefNames: string[] | undefined;
@@ -1070,22 +1014,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1070
1014
  getRefNameColor(refName: string): string | undefined;
1071
1015
  isValidRefName(refName: string): boolean;
1072
1016
  } & {
1073
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1017
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1074
1018
  regions: import("@jbrowse/core/util").Region[];
1075
1019
  refNameAliases: {
1076
1020
  [x: string]: string;
1077
1021
  };
1078
- lowerCaseRefNameAliases: {
1079
- [x: string]: string;
1080
- };
1081
1022
  cytobands: import("@jbrowse/core/util").Feature[];
1082
1023
  }): void;
1083
1024
  setError(e: unknown): void;
1084
1025
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1085
1026
  setRefNameAliases(aliases: {
1086
1027
  [x: string]: string;
1087
- }, lowerCaseAliases: {
1088
- [x: string]: string;
1089
1028
  }): void;
1090
1029
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1091
1030
  setLoadingP(p?: Promise<void>): void;
@@ -1105,6 +1044,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1105
1044
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1106
1045
  [x: string]: string;
1107
1046
  }>;
1047
+ afterCreate(): void;
1108
1048
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1109
1049
  getRefNameMapForAdapter(adapterConf: {
1110
1050
  [x: string]: unknown;
@@ -1154,18 +1094,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1154
1094
  refNameAliases: {
1155
1095
  [x: string]: string;
1156
1096
  } | undefined;
1157
- lowerCaseRefNameAliases: {
1158
- [x: string]: string;
1159
- } | undefined;
1160
1097
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1161
1098
  } & {
1162
1099
  getConf(arg: string): any;
1100
+ readonly lowerCaseRefNameAliases: {
1101
+ [k: string]: string;
1102
+ } | undefined;
1163
1103
  } & {
1164
1104
  readonly initialized: boolean;
1165
1105
  readonly name: string;
1166
1106
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1167
1107
  readonly aliases: string[];
1168
- readonly displayName: string | undefined;
1108
+ readonly displayName: string;
1169
1109
  hasName(name: string): boolean;
1170
1110
  readonly allAliases: string[];
1171
1111
  readonly allRefNames: string[] | undefined;
@@ -1180,22 +1120,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1180
1120
  getRefNameColor(refName: string): string | undefined;
1181
1121
  isValidRefName(refName: string): boolean;
1182
1122
  } & {
1183
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1123
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1184
1124
  regions: import("@jbrowse/core/util").Region[];
1185
1125
  refNameAliases: {
1186
1126
  [x: string]: string;
1187
1127
  };
1188
- lowerCaseRefNameAliases: {
1189
- [x: string]: string;
1190
- };
1191
1128
  cytobands: import("@jbrowse/core/util").Feature[];
1192
1129
  }): void;
1193
1130
  setError(e: unknown): void;
1194
1131
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1195
1132
  setRefNameAliases(aliases: {
1196
1133
  [x: string]: string;
1197
- }, lowerCaseAliases: {
1198
- [x: string]: string;
1199
1134
  }): void;
1200
1135
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1201
1136
  setLoadingP(p?: Promise<void>): void;
@@ -1215,6 +1150,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1215
1150
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1216
1151
  [x: string]: string;
1217
1152
  }>;
1153
+ afterCreate(): void;
1218
1154
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1219
1155
  }, {
1220
1156
  readonly assemblyNameMap: Record<string, {
@@ -1226,18 +1162,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1226
1162
  refNameAliases: {
1227
1163
  [x: string]: string;
1228
1164
  } | undefined;
1229
- lowerCaseRefNameAliases: {
1230
- [x: string]: string;
1231
- } | undefined;
1232
1165
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1233
1166
  } & {
1234
1167
  getConf(arg: string): any;
1168
+ readonly lowerCaseRefNameAliases: {
1169
+ [k: string]: string;
1170
+ } | undefined;
1235
1171
  } & {
1236
1172
  readonly initialized: boolean;
1237
1173
  readonly name: string;
1238
1174
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1239
1175
  readonly aliases: string[];
1240
- readonly displayName: string | undefined;
1176
+ readonly displayName: string;
1241
1177
  hasName(name: string): boolean;
1242
1178
  readonly allAliases: string[];
1243
1179
  readonly allRefNames: string[] | undefined;
@@ -1252,22 +1188,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1252
1188
  getRefNameColor(refName: string): string | undefined;
1253
1189
  isValidRefName(refName: string): boolean;
1254
1190
  } & {
1255
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1191
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1256
1192
  regions: import("@jbrowse/core/util").Region[];
1257
1193
  refNameAliases: {
1258
1194
  [x: string]: string;
1259
1195
  };
1260
- lowerCaseRefNameAliases: {
1261
- [x: string]: string;
1262
- };
1263
1196
  cytobands: import("@jbrowse/core/util").Feature[];
1264
1197
  }): void;
1265
1198
  setError(e: unknown): void;
1266
1199
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1267
1200
  setRefNameAliases(aliases: {
1268
1201
  [x: string]: string;
1269
- }, lowerCaseAliases: {
1270
- [x: string]: string;
1271
1202
  }): void;
1272
1203
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1273
1204
  setLoadingP(p?: Promise<void>): void;
@@ -1287,6 +1218,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1287
1218
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1288
1219
  [x: string]: string;
1289
1220
  }>;
1221
+ afterCreate(): void;
1290
1222
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1291
1223
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1292
1224
  }, {
@@ -1296,18 +1228,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1296
1228
  refNameAliases: {
1297
1229
  [x: string]: string;
1298
1230
  } | undefined;
1299
- lowerCaseRefNameAliases: {
1300
- [x: string]: string;
1301
- } | undefined;
1302
1231
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1303
1232
  } & {
1304
1233
  getConf(arg: string): any;
1234
+ readonly lowerCaseRefNameAliases: {
1235
+ [k: string]: string;
1236
+ } | undefined;
1305
1237
  } & {
1306
1238
  readonly initialized: boolean;
1307
1239
  readonly name: string;
1308
1240
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1309
1241
  readonly aliases: string[];
1310
- readonly displayName: string | undefined;
1242
+ readonly displayName: string;
1311
1243
  hasName(name: string): boolean;
1312
1244
  readonly allAliases: string[];
1313
1245
  readonly allRefNames: string[] | undefined;
@@ -1322,22 +1254,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1322
1254
  getRefNameColor(refName: string): string | undefined;
1323
1255
  isValidRefName(refName: string): boolean;
1324
1256
  } & {
1325
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1257
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1326
1258
  regions: import("@jbrowse/core/util").Region[];
1327
1259
  refNameAliases: {
1328
1260
  [x: string]: string;
1329
1261
  };
1330
- lowerCaseRefNameAliases: {
1331
- [x: string]: string;
1332
- };
1333
1262
  cytobands: import("@jbrowse/core/util").Feature[];
1334
1263
  }): void;
1335
1264
  setError(e: unknown): void;
1336
1265
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1337
1266
  setRefNameAliases(aliases: {
1338
1267
  [x: string]: string;
1339
- }, lowerCaseAliases: {
1340
- [x: string]: string;
1341
1268
  }): void;
1342
1269
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1343
1270
  setLoadingP(p?: Promise<void>): void;
@@ -1357,6 +1284,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1357
1284
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1358
1285
  [x: string]: string;
1359
1286
  }>;
1287
+ afterCreate(): void;
1360
1288
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1361
1289
  } & {
1362
1290
  get(asmName: string): ({
@@ -1368,18 +1296,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1368
1296
  refNameAliases: {
1369
1297
  [x: string]: string;
1370
1298
  } | undefined;
1371
- lowerCaseRefNameAliases: {
1372
- [x: string]: string;
1373
- } | undefined;
1374
1299
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1375
1300
  } & {
1376
1301
  getConf(arg: string): any;
1302
+ readonly lowerCaseRefNameAliases: {
1303
+ [k: string]: string;
1304
+ } | undefined;
1377
1305
  } & {
1378
1306
  readonly initialized: boolean;
1379
1307
  readonly name: string;
1380
1308
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1381
1309
  readonly aliases: string[];
1382
- readonly displayName: string | undefined;
1310
+ readonly displayName: string;
1383
1311
  hasName(name: string): boolean;
1384
1312
  readonly allAliases: string[];
1385
1313
  readonly allRefNames: string[] | undefined;
@@ -1394,22 +1322,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1394
1322
  getRefNameColor(refName: string): string | undefined;
1395
1323
  isValidRefName(refName: string): boolean;
1396
1324
  } & {
1397
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1325
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1398
1326
  regions: import("@jbrowse/core/util").Region[];
1399
1327
  refNameAliases: {
1400
1328
  [x: string]: string;
1401
1329
  };
1402
- lowerCaseRefNameAliases: {
1403
- [x: string]: string;
1404
- };
1405
1330
  cytobands: import("@jbrowse/core/util").Feature[];
1406
1331
  }): void;
1407
1332
  setError(e: unknown): void;
1408
1333
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1409
1334
  setRefNameAliases(aliases: {
1410
1335
  [x: string]: string;
1411
- }, lowerCaseAliases: {
1412
- [x: string]: string;
1413
1336
  }): void;
1414
1337
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1415
1338
  setLoadingP(p?: Promise<void>): void;
@@ -1429,6 +1352,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1429
1352
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1430
1353
  [x: string]: string;
1431
1354
  }>;
1355
+ afterCreate(): void;
1432
1356
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1433
1357
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1434
1358
  }, {
@@ -1438,18 +1362,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1438
1362
  refNameAliases: {
1439
1363
  [x: string]: string;
1440
1364
  } | undefined;
1441
- lowerCaseRefNameAliases: {
1442
- [x: string]: string;
1443
- } | undefined;
1444
1365
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1445
1366
  } & {
1446
1367
  getConf(arg: string): any;
1368
+ readonly lowerCaseRefNameAliases: {
1369
+ [k: string]: string;
1370
+ } | undefined;
1447
1371
  } & {
1448
1372
  readonly initialized: boolean;
1449
1373
  readonly name: string;
1450
1374
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1451
1375
  readonly aliases: string[];
1452
- readonly displayName: string | undefined;
1376
+ readonly displayName: string;
1453
1377
  hasName(name: string): boolean;
1454
1378
  readonly allAliases: string[];
1455
1379
  readonly allRefNames: string[] | undefined;
@@ -1464,22 +1388,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1464
1388
  getRefNameColor(refName: string): string | undefined;
1465
1389
  isValidRefName(refName: string): boolean;
1466
1390
  } & {
1467
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1391
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1468
1392
  regions: import("@jbrowse/core/util").Region[];
1469
1393
  refNameAliases: {
1470
1394
  [x: string]: string;
1471
1395
  };
1472
- lowerCaseRefNameAliases: {
1473
- [x: string]: string;
1474
- };
1475
1396
  cytobands: import("@jbrowse/core/util").Feature[];
1476
1397
  }): void;
1477
1398
  setError(e: unknown): void;
1478
1399
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1479
1400
  setRefNameAliases(aliases: {
1480
1401
  [x: string]: string;
1481
- }, lowerCaseAliases: {
1482
- [x: string]: string;
1483
1402
  }): void;
1484
1403
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1485
1404
  setLoadingP(p?: Promise<void>): void;
@@ -1499,6 +1418,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1499
1418
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1500
1419
  [x: string]: string;
1501
1420
  }>;
1421
+ afterCreate(): void;
1502
1422
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1503
1423
  readonly assemblyNamesList: any[];
1504
1424
  readonly assemblyList: AnyConfigurationModel[];
@@ -1513,18 +1433,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1513
1433
  refNameAliases: {
1514
1434
  [x: string]: string;
1515
1435
  } | undefined;
1516
- lowerCaseRefNameAliases: {
1517
- [x: string]: string;
1518
- } | undefined;
1519
1436
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1520
1437
  } & {
1521
1438
  getConf(arg: string): any;
1439
+ readonly lowerCaseRefNameAliases: {
1440
+ [k: string]: string;
1441
+ } | undefined;
1522
1442
  } & {
1523
1443
  readonly initialized: boolean;
1524
1444
  readonly name: string;
1525
1445
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1526
1446
  readonly aliases: string[];
1527
- readonly displayName: string | undefined;
1447
+ readonly displayName: string;
1528
1448
  hasName(name: string): boolean;
1529
1449
  readonly allAliases: string[];
1530
1450
  readonly allRefNames: string[] | undefined;
@@ -1539,22 +1459,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1539
1459
  getRefNameColor(refName: string): string | undefined;
1540
1460
  isValidRefName(refName: string): boolean;
1541
1461
  } & {
1542
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1462
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1543
1463
  regions: import("@jbrowse/core/util").Region[];
1544
1464
  refNameAliases: {
1545
1465
  [x: string]: string;
1546
1466
  };
1547
- lowerCaseRefNameAliases: {
1548
- [x: string]: string;
1549
- };
1550
1467
  cytobands: import("@jbrowse/core/util").Feature[];
1551
1468
  }): void;
1552
1469
  setError(e: unknown): void;
1553
1470
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1554
1471
  setRefNameAliases(aliases: {
1555
1472
  [x: string]: string;
1556
- }, lowerCaseAliases: {
1557
- [x: string]: string;
1558
1473
  }): void;
1559
1474
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1560
1475
  setLoadingP(p?: Promise<void>): void;
@@ -1574,6 +1489,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1574
1489
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1575
1490
  [x: string]: string;
1576
1491
  }>;
1492
+ afterCreate(): void;
1577
1493
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1578
1494
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1579
1495
  }, {
@@ -1583,18 +1499,18 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1583
1499
  refNameAliases: {
1584
1500
  [x: string]: string;
1585
1501
  } | undefined;
1586
- lowerCaseRefNameAliases: {
1587
- [x: string]: string;
1588
- } | undefined;
1589
1502
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1590
1503
  } & {
1591
1504
  getConf(arg: string): any;
1505
+ readonly lowerCaseRefNameAliases: {
1506
+ [k: string]: string;
1507
+ } | undefined;
1592
1508
  } & {
1593
1509
  readonly initialized: boolean;
1594
1510
  readonly name: string;
1595
1511
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1596
1512
  readonly aliases: string[];
1597
- readonly displayName: string | undefined;
1513
+ readonly displayName: string;
1598
1514
  hasName(name: string): boolean;
1599
1515
  readonly allAliases: string[];
1600
1516
  readonly allRefNames: string[] | undefined;
@@ -1609,22 +1525,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1609
1525
  getRefNameColor(refName: string): string | undefined;
1610
1526
  isValidRefName(refName: string): boolean;
1611
1527
  } & {
1612
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1528
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1613
1529
  regions: import("@jbrowse/core/util").Region[];
1614
1530
  refNameAliases: {
1615
1531
  [x: string]: string;
1616
1532
  };
1617
- lowerCaseRefNameAliases: {
1618
- [x: string]: string;
1619
- };
1620
1533
  cytobands: import("@jbrowse/core/util").Feature[];
1621
1534
  }): void;
1622
1535
  setError(e: unknown): void;
1623
1536
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1624
1537
  setRefNameAliases(aliases: {
1625
1538
  [x: string]: string;
1626
- }, lowerCaseAliases: {
1627
- [x: string]: string;
1628
1539
  }): void;
1629
1540
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1630
1541
  setLoadingP(p?: Promise<void>): void;
@@ -1644,6 +1555,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1644
1555
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1645
1556
  [x: string]: string;
1646
1557
  }>;
1558
+ afterCreate(): void;
1647
1559
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1648
1560
  getRefNameMapForAdapter(adapterConf: {
1649
1561
  [x: string]: unknown;