@jbrowse/product-core 3.5.0 → 3.5.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +42 -70
  2. package/dist/Session/MultipleViews.d.ts +132 -220
  3. package/dist/Session/SessionTracks.d.ts +132 -220
  4. package/dist/Session/Tracks.d.ts +132 -220
  5. package/esm/RootModel/BaseRootModel.d.ts +42 -70
  6. package/esm/Session/MultipleViews.d.ts +132 -220
  7. package/esm/Session/SessionTracks.d.ts +132 -220
  8. package/esm/Session/Tracks.d.ts +132 -220
  9. package/package.json +3 -3
package/dist/Session/MultipleViews.d.ts CHANGED
@@ -32,18 +32,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -58,22 +58,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -93,6 +88,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -102,18 +98,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -128,22 +124,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -163,6 +154,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  readonly assemblyNameMap: Record<string, {
@@ -174,18 +166,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -200,22 +192,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -235,6 +222,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -244,18 +232,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -270,22 +258,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -305,6 +288,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & {
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  get(asmName: string): ({
@@ -316,18 +300,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -342,22 +326,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -377,6 +356,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
380
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -386,18 +366,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
393
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
374
+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -412,22 +392,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
413
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  isValidRefName(refName: string): boolean;
414
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  } & {
415
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
395
+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
417
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  refNameAliases: {
418
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  [x: string]: string;
419
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  };
420
- lowerCaseRefNameAliases: {
421
- [x: string]: string;
422
- };
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  cytobands: import("@jbrowse/core/util").Feature[];
424
401
  }): void;
425
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  setError(e: unknown): void;
426
403
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
427
404
  setRefNameAliases(aliases: {
428
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  [x: string]: string;
429
- }, lowerCaseAliases: {
430
- [x: string]: string;
431
406
  }): void;
432
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
433
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  setLoadingP(p?: Promise<void>): void;
@@ -447,6 +422,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
447
422
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
448
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  [x: string]: string;
449
424
  }>;
425
+ afterCreate(): void;
450
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
451
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  readonly assemblyNamesList: any[];
452
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  readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
@@ -461,18 +437,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
461
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  refNameAliases: {
462
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  [x: string]: string;
463
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  } | undefined;
464
- lowerCaseRefNameAliases: {
465
- [x: string]: string;
466
- } | undefined;
467
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
468
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  } & {
469
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  getConf(arg: string): any;
443
+ readonly lowerCaseRefNameAliases: {
444
+ [k: string]: string;
445
+ } | undefined;
470
446
  } & {
471
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  readonly initialized: boolean;
472
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  readonly name: string;
473
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
474
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  readonly aliases: string[];
475
- readonly displayName: string | undefined;
451
+ readonly displayName: string;
476
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  hasName(name: string): boolean;
477
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  readonly allAliases: string[];
478
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  readonly allRefNames: string[] | undefined;
@@ -487,22 +463,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
487
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  getRefNameColor(refName: string): string | undefined;
488
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  isValidRefName(refName: string): boolean;
489
465
  } & {
490
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
466
+ setLoaded({ regions, refNameAliases, cytobands, }: {
491
467
  regions: import("@jbrowse/core/util").Region[];
492
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  refNameAliases: {
493
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  [x: string]: string;
494
470
  };
495
- lowerCaseRefNameAliases: {
496
- [x: string]: string;
497
- };
498
471
  cytobands: import("@jbrowse/core/util").Feature[];
499
472
  }): void;
500
473
  setError(e: unknown): void;
501
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
502
475
  setRefNameAliases(aliases: {
503
476
  [x: string]: string;
504
- }, lowerCaseAliases: {
505
- [x: string]: string;
506
477
  }): void;
507
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
508
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  setLoadingP(p?: Promise<void>): void;
@@ -522,6 +493,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
522
493
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
523
494
  [x: string]: string;
524
495
  }>;
496
+ afterCreate(): void;
525
497
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
526
498
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
527
499
  }, {
@@ -531,18 +503,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
531
503
  refNameAliases: {
532
504
  [x: string]: string;
533
505
  } | undefined;
534
- lowerCaseRefNameAliases: {
535
- [x: string]: string;
536
- } | undefined;
537
506
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
538
507
  } & {
539
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  getConf(arg: string): any;
509
+ readonly lowerCaseRefNameAliases: {
510
+ [k: string]: string;
511
+ } | undefined;
540
512
  } & {
541
513
  readonly initialized: boolean;
542
514
  readonly name: string;
543
515
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
544
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  readonly aliases: string[];
545
- readonly displayName: string | undefined;
517
+ readonly displayName: string;
546
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  hasName(name: string): boolean;
547
519
  readonly allAliases: string[];
548
520
  readonly allRefNames: string[] | undefined;
@@ -557,22 +529,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
557
529
  getRefNameColor(refName: string): string | undefined;
558
530
  isValidRefName(refName: string): boolean;
559
531
  } & {
560
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
532
+ setLoaded({ regions, refNameAliases, cytobands, }: {
561
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  regions: import("@jbrowse/core/util").Region[];
562
534
  refNameAliases: {
563
535
  [x: string]: string;
564
536
  };
565
- lowerCaseRefNameAliases: {
566
- [x: string]: string;
567
- };
568
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  cytobands: import("@jbrowse/core/util").Feature[];
569
538
  }): void;
570
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  setError(e: unknown): void;
571
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
572
541
  setRefNameAliases(aliases: {
573
542
  [x: string]: string;
574
- }, lowerCaseAliases: {
575
- [x: string]: string;
576
543
  }): void;
577
544
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
578
545
  setLoadingP(p?: Promise<void>): void;
@@ -592,6 +559,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
592
559
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
593
560
  [x: string]: string;
594
561
  }>;
562
+ afterCreate(): void;
595
563
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
596
564
  getRefNameMapForAdapter(adapterConf: {
597
565
  [x: string]: unknown;
@@ -624,18 +592,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
624
592
  refNameAliases: {
625
593
  [x: string]: string;
626
594
  } | undefined;
627
- lowerCaseRefNameAliases: {
628
- [x: string]: string;
629
- } | undefined;
630
595
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
631
596
  } & {
632
597
  getConf(arg: string): any;
598
+ readonly lowerCaseRefNameAliases: {
599
+ [k: string]: string;
600
+ } | undefined;
633
601
  } & {
634
602
  readonly initialized: boolean;
635
603
  readonly name: string;
636
604
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
637
605
  readonly aliases: string[];
638
- readonly displayName: string | undefined;
606
+ readonly displayName: string;
639
607
  hasName(name: string): boolean;
640
608
  readonly allAliases: string[];
641
609
  readonly allRefNames: string[] | undefined;
@@ -650,22 +618,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
650
618
  getRefNameColor(refName: string): string | undefined;
651
619
  isValidRefName(refName: string): boolean;
652
620
  } & {
653
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
621
+ setLoaded({ regions, refNameAliases, cytobands, }: {
654
622
  regions: import("@jbrowse/core/util").Region[];
655
623
  refNameAliases: {
656
624
  [x: string]: string;
657
625
  };
658
- lowerCaseRefNameAliases: {
659
- [x: string]: string;
660
- };
661
626
  cytobands: import("@jbrowse/core/util").Feature[];
662
627
  }): void;
663
628
  setError(e: unknown): void;
664
629
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
665
630
  setRefNameAliases(aliases: {
666
631
  [x: string]: string;
667
- }, lowerCaseAliases: {
668
- [x: string]: string;
669
632
  }): void;
670
633
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
671
634
  setLoadingP(p?: Promise<void>): void;
@@ -685,6 +648,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
685
648
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
686
649
  [x: string]: string;
687
650
  }>;
651
+ afterCreate(): void;
688
652
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
689
653
  }, {
690
654
  readonly assemblyNameMap: Record<string, {
@@ -696,18 +660,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
696
660
  refNameAliases: {
697
661
  [x: string]: string;
698
662
  } | undefined;
699
- lowerCaseRefNameAliases: {
700
- [x: string]: string;
701
- } | undefined;
702
663
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
703
664
  } & {
704
665
  getConf(arg: string): any;
666
+ readonly lowerCaseRefNameAliases: {
667
+ [k: string]: string;
668
+ } | undefined;
705
669
  } & {
706
670
  readonly initialized: boolean;
707
671
  readonly name: string;
708
672
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
709
673
  readonly aliases: string[];
710
- readonly displayName: string | undefined;
674
+ readonly displayName: string;
711
675
  hasName(name: string): boolean;
712
676
  readonly allAliases: string[];
713
677
  readonly allRefNames: string[] | undefined;
@@ -722,22 +686,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
722
686
  getRefNameColor(refName: string): string | undefined;
723
687
  isValidRefName(refName: string): boolean;
724
688
  } & {
725
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
689
+ setLoaded({ regions, refNameAliases, cytobands, }: {
726
690
  regions: import("@jbrowse/core/util").Region[];
727
691
  refNameAliases: {
728
692
  [x: string]: string;
729
693
  };
730
- lowerCaseRefNameAliases: {
731
- [x: string]: string;
732
- };
733
694
  cytobands: import("@jbrowse/core/util").Feature[];
734
695
  }): void;
735
696
  setError(e: unknown): void;
736
697
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
737
698
  setRefNameAliases(aliases: {
738
699
  [x: string]: string;
739
- }, lowerCaseAliases: {
740
- [x: string]: string;
741
700
  }): void;
742
701
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
743
702
  setLoadingP(p?: Promise<void>): void;
@@ -757,6 +716,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
757
716
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
758
717
  [x: string]: string;
759
718
  }>;
719
+ afterCreate(): void;
760
720
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
761
721
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
762
722
  }, {
@@ -766,18 +726,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
766
726
  refNameAliases: {
767
727
  [x: string]: string;
768
728
  } | undefined;
769
- lowerCaseRefNameAliases: {
770
- [x: string]: string;
771
- } | undefined;
772
729
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
773
730
  } & {
774
731
  getConf(arg: string): any;
732
+ readonly lowerCaseRefNameAliases: {
733
+ [k: string]: string;
734
+ } | undefined;
775
735
  } & {
776
736
  readonly initialized: boolean;
777
737
  readonly name: string;
778
738
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
779
739
  readonly aliases: string[];
780
- readonly displayName: string | undefined;
740
+ readonly displayName: string;
781
741
  hasName(name: string): boolean;
782
742
  readonly allAliases: string[];
783
743
  readonly allRefNames: string[] | undefined;
@@ -792,22 +752,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
792
752
  getRefNameColor(refName: string): string | undefined;
793
753
  isValidRefName(refName: string): boolean;
794
754
  } & {
795
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
755
+ setLoaded({ regions, refNameAliases, cytobands, }: {
796
756
  regions: import("@jbrowse/core/util").Region[];
797
757
  refNameAliases: {
798
758
  [x: string]: string;
799
759
  };
800
- lowerCaseRefNameAliases: {
801
- [x: string]: string;
802
- };
803
760
  cytobands: import("@jbrowse/core/util").Feature[];
804
761
  }): void;
805
762
  setError(e: unknown): void;
806
763
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
807
764
  setRefNameAliases(aliases: {
808
765
  [x: string]: string;
809
- }, lowerCaseAliases: {
810
- [x: string]: string;
811
766
  }): void;
812
767
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
813
768
  setLoadingP(p?: Promise<void>): void;
@@ -827,6 +782,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
827
782
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
828
783
  [x: string]: string;
829
784
  }>;
785
+ afterCreate(): void;
830
786
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
831
787
  } & {
832
788
  get(asmName: string): ({
@@ -838,18 +794,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
838
794
  refNameAliases: {
839
795
  [x: string]: string;
840
796
  } | undefined;
841
- lowerCaseRefNameAliases: {
842
- [x: string]: string;
843
- } | undefined;
844
797
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
845
798
  } & {
846
799
  getConf(arg: string): any;
800
+ readonly lowerCaseRefNameAliases: {
801
+ [k: string]: string;
802
+ } | undefined;
847
803
  } & {
848
804
  readonly initialized: boolean;
849
805
  readonly name: string;
850
806
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
851
807
  readonly aliases: string[];
852
- readonly displayName: string | undefined;
808
+ readonly displayName: string;
853
809
  hasName(name: string): boolean;
854
810
  readonly allAliases: string[];
855
811
  readonly allRefNames: string[] | undefined;
@@ -864,22 +820,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
864
820
  getRefNameColor(refName: string): string | undefined;
865
821
  isValidRefName(refName: string): boolean;
866
822
  } & {
867
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
823
+ setLoaded({ regions, refNameAliases, cytobands, }: {
868
824
  regions: import("@jbrowse/core/util").Region[];
869
825
  refNameAliases: {
870
826
  [x: string]: string;
871
827
  };
872
- lowerCaseRefNameAliases: {
873
- [x: string]: string;
874
- };
875
828
  cytobands: import("@jbrowse/core/util").Feature[];
876
829
  }): void;
877
830
  setError(e: unknown): void;
878
831
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
879
832
  setRefNameAliases(aliases: {
880
833
  [x: string]: string;
881
- }, lowerCaseAliases: {
882
- [x: string]: string;
883
834
  }): void;
884
835
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
885
836
  setLoadingP(p?: Promise<void>): void;
@@ -899,6 +850,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
899
850
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
900
851
  [x: string]: string;
901
852
  }>;
853
+ afterCreate(): void;
902
854
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
903
855
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
904
856
  }, {
@@ -908,18 +860,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
908
860
  refNameAliases: {
909
861
  [x: string]: string;
910
862
  } | undefined;
911
- lowerCaseRefNameAliases: {
912
- [x: string]: string;
913
- } | undefined;
914
863
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
915
864
  } & {
916
865
  getConf(arg: string): any;
866
+ readonly lowerCaseRefNameAliases: {
867
+ [k: string]: string;
868
+ } | undefined;
917
869
  } & {
918
870
  readonly initialized: boolean;
919
871
  readonly name: string;
920
872
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
921
873
  readonly aliases: string[];
922
- readonly displayName: string | undefined;
874
+ readonly displayName: string;
923
875
  hasName(name: string): boolean;
924
876
  readonly allAliases: string[];
925
877
  readonly allRefNames: string[] | undefined;
@@ -934,22 +886,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
934
886
  getRefNameColor(refName: string): string | undefined;
935
887
  isValidRefName(refName: string): boolean;
936
888
  } & {
937
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
889
+ setLoaded({ regions, refNameAliases, cytobands, }: {
938
890
  regions: import("@jbrowse/core/util").Region[];
939
891
  refNameAliases: {
940
892
  [x: string]: string;
941
893
  };
942
- lowerCaseRefNameAliases: {
943
- [x: string]: string;
944
- };
945
894
  cytobands: import("@jbrowse/core/util").Feature[];
946
895
  }): void;
947
896
  setError(e: unknown): void;
948
897
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
949
898
  setRefNameAliases(aliases: {
950
899
  [x: string]: string;
951
- }, lowerCaseAliases: {
952
- [x: string]: string;
953
900
  }): void;
954
901
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
955
902
  setLoadingP(p?: Promise<void>): void;
@@ -969,6 +916,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
969
916
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
970
917
  [x: string]: string;
971
918
  }>;
919
+ afterCreate(): void;
972
920
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
973
921
  readonly assemblyNamesList: any[];
974
922
  readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
@@ -983,18 +931,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
983
931
  refNameAliases: {
984
932
  [x: string]: string;
985
933
  } | undefined;
986
- lowerCaseRefNameAliases: {
987
- [x: string]: string;
988
- } | undefined;
989
934
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
990
935
  } & {
991
936
  getConf(arg: string): any;
937
+ readonly lowerCaseRefNameAliases: {
938
+ [k: string]: string;
939
+ } | undefined;
992
940
  } & {
993
941
  readonly initialized: boolean;
994
942
  readonly name: string;
995
943
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
996
944
  readonly aliases: string[];
997
- readonly displayName: string | undefined;
945
+ readonly displayName: string;
998
946
  hasName(name: string): boolean;
999
947
  readonly allAliases: string[];
1000
948
  readonly allRefNames: string[] | undefined;
@@ -1009,22 +957,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1009
957
  getRefNameColor(refName: string): string | undefined;
1010
958
  isValidRefName(refName: string): boolean;
1011
959
  } & {
1012
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
960
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1013
961
  regions: import("@jbrowse/core/util").Region[];
1014
962
  refNameAliases: {
1015
963
  [x: string]: string;
1016
964
  };
1017
- lowerCaseRefNameAliases: {
1018
- [x: string]: string;
1019
- };
1020
965
  cytobands: import("@jbrowse/core/util").Feature[];
1021
966
  }): void;
1022
967
  setError(e: unknown): void;
1023
968
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1024
969
  setRefNameAliases(aliases: {
1025
970
  [x: string]: string;
1026
- }, lowerCaseAliases: {
1027
- [x: string]: string;
1028
971
  }): void;
1029
972
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1030
973
  setLoadingP(p?: Promise<void>): void;
@@ -1044,6 +987,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1044
987
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1045
988
  [x: string]: string;
1046
989
  }>;
990
+ afterCreate(): void;
1047
991
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1048
992
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1049
993
  }, {
@@ -1053,18 +997,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1053
997
  refNameAliases: {
1054
998
  [x: string]: string;
1055
999
  } | undefined;
1056
- lowerCaseRefNameAliases: {
1057
- [x: string]: string;
1058
- } | undefined;
1059
1000
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1060
1001
  } & {
1061
1002
  getConf(arg: string): any;
1003
+ readonly lowerCaseRefNameAliases: {
1004
+ [k: string]: string;
1005
+ } | undefined;
1062
1006
  } & {
1063
1007
  readonly initialized: boolean;
1064
1008
  readonly name: string;
1065
1009
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1066
1010
  readonly aliases: string[];
1067
- readonly displayName: string | undefined;
1011
+ readonly displayName: string;
1068
1012
  hasName(name: string): boolean;
1069
1013
  readonly allAliases: string[];
1070
1014
  readonly allRefNames: string[] | undefined;
@@ -1079,22 +1023,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1079
1023
  getRefNameColor(refName: string): string | undefined;
1080
1024
  isValidRefName(refName: string): boolean;
1081
1025
  } & {
1082
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1026
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1083
1027
  regions: import("@jbrowse/core/util").Region[];
1084
1028
  refNameAliases: {
1085
1029
  [x: string]: string;
1086
1030
  };
1087
- lowerCaseRefNameAliases: {
1088
- [x: string]: string;
1089
- };
1090
1031
  cytobands: import("@jbrowse/core/util").Feature[];
1091
1032
  }): void;
1092
1033
  setError(e: unknown): void;
1093
1034
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1094
1035
  setRefNameAliases(aliases: {
1095
1036
  [x: string]: string;
1096
- }, lowerCaseAliases: {
1097
- [x: string]: string;
1098
1037
  }): void;
1099
1038
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1100
1039
  setLoadingP(p?: Promise<void>): void;
@@ -1114,6 +1053,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1114
1053
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1115
1054
  [x: string]: string;
1116
1055
  }>;
1056
+ afterCreate(): void;
1117
1057
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1118
1058
  getRefNameMapForAdapter(adapterConf: {
1119
1059
  [x: string]: unknown;
@@ -1163,18 +1103,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1163
1103
  refNameAliases: {
1164
1104
  [x: string]: string;
1165
1105
  } | undefined;
1166
- lowerCaseRefNameAliases: {
1167
- [x: string]: string;
1168
- } | undefined;
1169
1106
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1170
1107
  } & {
1171
1108
  getConf(arg: string): any;
1109
+ readonly lowerCaseRefNameAliases: {
1110
+ [k: string]: string;
1111
+ } | undefined;
1172
1112
  } & {
1173
1113
  readonly initialized: boolean;
1174
1114
  readonly name: string;
1175
1115
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1176
1116
  readonly aliases: string[];
1177
- readonly displayName: string | undefined;
1117
+ readonly displayName: string;
1178
1118
  hasName(name: string): boolean;
1179
1119
  readonly allAliases: string[];
1180
1120
  readonly allRefNames: string[] | undefined;
@@ -1189,22 +1129,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1189
1129
  getRefNameColor(refName: string): string | undefined;
1190
1130
  isValidRefName(refName: string): boolean;
1191
1131
  } & {
1192
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1132
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1193
1133
  regions: import("@jbrowse/core/util").Region[];
1194
1134
  refNameAliases: {
1195
1135
  [x: string]: string;
1196
1136
  };
1197
- lowerCaseRefNameAliases: {
1198
- [x: string]: string;
1199
- };
1200
1137
  cytobands: import("@jbrowse/core/util").Feature[];
1201
1138
  }): void;
1202
1139
  setError(e: unknown): void;
1203
1140
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1204
1141
  setRefNameAliases(aliases: {
1205
1142
  [x: string]: string;
1206
- }, lowerCaseAliases: {
1207
- [x: string]: string;
1208
1143
  }): void;
1209
1144
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1210
1145
  setLoadingP(p?: Promise<void>): void;
@@ -1224,6 +1159,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1224
1159
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1225
1160
  [x: string]: string;
1226
1161
  }>;
1162
+ afterCreate(): void;
1227
1163
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1228
1164
  }, {
1229
1165
  readonly assemblyNameMap: Record<string, {
@@ -1235,18 +1171,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1235
1171
  refNameAliases: {
1236
1172
  [x: string]: string;
1237
1173
  } | undefined;
1238
- lowerCaseRefNameAliases: {
1239
- [x: string]: string;
1240
- } | undefined;
1241
1174
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1242
1175
  } & {
1243
1176
  getConf(arg: string): any;
1177
+ readonly lowerCaseRefNameAliases: {
1178
+ [k: string]: string;
1179
+ } | undefined;
1244
1180
  } & {
1245
1181
  readonly initialized: boolean;
1246
1182
  readonly name: string;
1247
1183
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1248
1184
  readonly aliases: string[];
1249
- readonly displayName: string | undefined;
1185
+ readonly displayName: string;
1250
1186
  hasName(name: string): boolean;
1251
1187
  readonly allAliases: string[];
1252
1188
  readonly allRefNames: string[] | undefined;
@@ -1261,22 +1197,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1261
1197
  getRefNameColor(refName: string): string | undefined;
1262
1198
  isValidRefName(refName: string): boolean;
1263
1199
  } & {
1264
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1200
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1265
1201
  regions: import("@jbrowse/core/util").Region[];
1266
1202
  refNameAliases: {
1267
1203
  [x: string]: string;
1268
1204
  };
1269
- lowerCaseRefNameAliases: {
1270
- [x: string]: string;
1271
- };
1272
1205
  cytobands: import("@jbrowse/core/util").Feature[];
1273
1206
  }): void;
1274
1207
  setError(e: unknown): void;
1275
1208
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1276
1209
  setRefNameAliases(aliases: {
1277
1210
  [x: string]: string;
1278
- }, lowerCaseAliases: {
1279
- [x: string]: string;
1280
1211
  }): void;
1281
1212
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1282
1213
  setLoadingP(p?: Promise<void>): void;
@@ -1296,6 +1227,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1296
1227
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1297
1228
  [x: string]: string;
1298
1229
  }>;
1230
+ afterCreate(): void;
1299
1231
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1300
1232
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1301
1233
  }, {
@@ -1305,18 +1237,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1305
1237
  refNameAliases: {
1306
1238
  [x: string]: string;
1307
1239
  } | undefined;
1308
- lowerCaseRefNameAliases: {
1309
- [x: string]: string;
1310
- } | undefined;
1311
1240
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1312
1241
  } & {
1313
1242
  getConf(arg: string): any;
1243
+ readonly lowerCaseRefNameAliases: {
1244
+ [k: string]: string;
1245
+ } | undefined;
1314
1246
  } & {
1315
1247
  readonly initialized: boolean;
1316
1248
  readonly name: string;
1317
1249
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1318
1250
  readonly aliases: string[];
1319
- readonly displayName: string | undefined;
1251
+ readonly displayName: string;
1320
1252
  hasName(name: string): boolean;
1321
1253
  readonly allAliases: string[];
1322
1254
  readonly allRefNames: string[] | undefined;
@@ -1331,22 +1263,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1331
1263
  getRefNameColor(refName: string): string | undefined;
1332
1264
  isValidRefName(refName: string): boolean;
1333
1265
  } & {
1334
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1266
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1335
1267
  regions: import("@jbrowse/core/util").Region[];
1336
1268
  refNameAliases: {
1337
1269
  [x: string]: string;
1338
1270
  };
1339
- lowerCaseRefNameAliases: {
1340
- [x: string]: string;
1341
- };
1342
1271
  cytobands: import("@jbrowse/core/util").Feature[];
1343
1272
  }): void;
1344
1273
  setError(e: unknown): void;
1345
1274
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1346
1275
  setRefNameAliases(aliases: {
1347
1276
  [x: string]: string;
1348
- }, lowerCaseAliases: {
1349
- [x: string]: string;
1350
1277
  }): void;
1351
1278
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1352
1279
  setLoadingP(p?: Promise<void>): void;
@@ -1366,6 +1293,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1366
1293
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1367
1294
  [x: string]: string;
1368
1295
  }>;
1296
+ afterCreate(): void;
1369
1297
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1370
1298
  } & {
1371
1299
  get(asmName: string): ({
@@ -1377,18 +1305,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1377
1305
  refNameAliases: {
1378
1306
  [x: string]: string;
1379
1307
  } | undefined;
1380
- lowerCaseRefNameAliases: {
1381
- [x: string]: string;
1382
- } | undefined;
1383
1308
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1384
1309
  } & {
1385
1310
  getConf(arg: string): any;
1311
+ readonly lowerCaseRefNameAliases: {
1312
+ [k: string]: string;
1313
+ } | undefined;
1386
1314
  } & {
1387
1315
  readonly initialized: boolean;
1388
1316
  readonly name: string;
1389
1317
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1390
1318
  readonly aliases: string[];
1391
- readonly displayName: string | undefined;
1319
+ readonly displayName: string;
1392
1320
  hasName(name: string): boolean;
1393
1321
  readonly allAliases: string[];
1394
1322
  readonly allRefNames: string[] | undefined;
@@ -1403,22 +1331,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1403
1331
  getRefNameColor(refName: string): string | undefined;
1404
1332
  isValidRefName(refName: string): boolean;
1405
1333
  } & {
1406
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1334
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1407
1335
  regions: import("@jbrowse/core/util").Region[];
1408
1336
  refNameAliases: {
1409
1337
  [x: string]: string;
1410
1338
  };
1411
- lowerCaseRefNameAliases: {
1412
- [x: string]: string;
1413
- };
1414
1339
  cytobands: import("@jbrowse/core/util").Feature[];
1415
1340
  }): void;
1416
1341
  setError(e: unknown): void;
1417
1342
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1418
1343
  setRefNameAliases(aliases: {
1419
1344
  [x: string]: string;
1420
- }, lowerCaseAliases: {
1421
- [x: string]: string;
1422
1345
  }): void;
1423
1346
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1424
1347
  setLoadingP(p?: Promise<void>): void;
@@ -1438,6 +1361,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1438
1361
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1439
1362
  [x: string]: string;
1440
1363
  }>;
1364
+ afterCreate(): void;
1441
1365
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1442
1366
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1443
1367
  }, {
@@ -1447,18 +1371,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1447
1371
  refNameAliases: {
1448
1372
  [x: string]: string;
1449
1373
  } | undefined;
1450
- lowerCaseRefNameAliases: {
1451
- [x: string]: string;
1452
- } | undefined;
1453
1374
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1454
1375
  } & {
1455
1376
  getConf(arg: string): any;
1377
+ readonly lowerCaseRefNameAliases: {
1378
+ [k: string]: string;
1379
+ } | undefined;
1456
1380
  } & {
1457
1381
  readonly initialized: boolean;
1458
1382
  readonly name: string;
1459
1383
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1460
1384
  readonly aliases: string[];
1461
- readonly displayName: string | undefined;
1385
+ readonly displayName: string;
1462
1386
  hasName(name: string): boolean;
1463
1387
  readonly allAliases: string[];
1464
1388
  readonly allRefNames: string[] | undefined;
@@ -1473,22 +1397,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1473
1397
  getRefNameColor(refName: string): string | undefined;
1474
1398
  isValidRefName(refName: string): boolean;
1475
1399
  } & {
1476
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1400
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1477
1401
  regions: import("@jbrowse/core/util").Region[];
1478
1402
  refNameAliases: {
1479
1403
  [x: string]: string;
1480
1404
  };
1481
- lowerCaseRefNameAliases: {
1482
- [x: string]: string;
1483
- };
1484
1405
  cytobands: import("@jbrowse/core/util").Feature[];
1485
1406
  }): void;
1486
1407
  setError(e: unknown): void;
1487
1408
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1488
1409
  setRefNameAliases(aliases: {
1489
1410
  [x: string]: string;
1490
- }, lowerCaseAliases: {
1491
- [x: string]: string;
1492
1411
  }): void;
1493
1412
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1494
1413
  setLoadingP(p?: Promise<void>): void;
@@ -1508,6 +1427,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1508
1427
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1509
1428
  [x: string]: string;
1510
1429
  }>;
1430
+ afterCreate(): void;
1511
1431
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1512
1432
  readonly assemblyNamesList: any[];
1513
1433
  readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
@@ -1522,18 +1442,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1522
1442
  refNameAliases: {
1523
1443
  [x: string]: string;
1524
1444
  } | undefined;
1525
- lowerCaseRefNameAliases: {
1526
- [x: string]: string;
1527
- } | undefined;
1528
1445
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1529
1446
  } & {
1530
1447
  getConf(arg: string): any;
1448
+ readonly lowerCaseRefNameAliases: {
1449
+ [k: string]: string;
1450
+ } | undefined;
1531
1451
  } & {
1532
1452
  readonly initialized: boolean;
1533
1453
  readonly name: string;
1534
1454
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1535
1455
  readonly aliases: string[];
1536
- readonly displayName: string | undefined;
1456
+ readonly displayName: string;
1537
1457
  hasName(name: string): boolean;
1538
1458
  readonly allAliases: string[];
1539
1459
  readonly allRefNames: string[] | undefined;
@@ -1548,22 +1468,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1548
1468
  getRefNameColor(refName: string): string | undefined;
1549
1469
  isValidRefName(refName: string): boolean;
1550
1470
  } & {
1551
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1471
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1552
1472
  regions: import("@jbrowse/core/util").Region[];
1553
1473
  refNameAliases: {
1554
1474
  [x: string]: string;
1555
1475
  };
1556
- lowerCaseRefNameAliases: {
1557
- [x: string]: string;
1558
- };
1559
1476
  cytobands: import("@jbrowse/core/util").Feature[];
1560
1477
  }): void;
1561
1478
  setError(e: unknown): void;
1562
1479
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1563
1480
  setRefNameAliases(aliases: {
1564
1481
  [x: string]: string;
1565
- }, lowerCaseAliases: {
1566
- [x: string]: string;
1567
1482
  }): void;
1568
1483
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1569
1484
  setLoadingP(p?: Promise<void>): void;
@@ -1583,6 +1498,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1583
1498
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1584
1499
  [x: string]: string;
1585
1500
  }>;
1501
+ afterCreate(): void;
1586
1502
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1587
1503
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1588
1504
  }, {
@@ -1592,18 +1508,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1592
1508
  refNameAliases: {
1593
1509
  [x: string]: string;
1594
1510
  } | undefined;
1595
- lowerCaseRefNameAliases: {
1596
- [x: string]: string;
1597
- } | undefined;
1598
1511
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1599
1512
  } & {
1600
1513
  getConf(arg: string): any;
1514
+ readonly lowerCaseRefNameAliases: {
1515
+ [k: string]: string;
1516
+ } | undefined;
1601
1517
  } & {
1602
1518
  readonly initialized: boolean;
1603
1519
  readonly name: string;
1604
1520
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1605
1521
  readonly aliases: string[];
1606
- readonly displayName: string | undefined;
1522
+ readonly displayName: string;
1607
1523
  hasName(name: string): boolean;
1608
1524
  readonly allAliases: string[];
1609
1525
  readonly allRefNames: string[] | undefined;
@@ -1618,22 +1534,17 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1618
1534
  getRefNameColor(refName: string): string | undefined;
1619
1535
  isValidRefName(refName: string): boolean;
1620
1536
  } & {
1621
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1537
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1622
1538
  regions: import("@jbrowse/core/util").Region[];
1623
1539
  refNameAliases: {
1624
1540
  [x: string]: string;
1625
1541
  };
1626
- lowerCaseRefNameAliases: {
1627
- [x: string]: string;
1628
- };
1629
1542
  cytobands: import("@jbrowse/core/util").Feature[];
1630
1543
  }): void;
1631
1544
  setError(e: unknown): void;
1632
1545
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1633
1546
  setRefNameAliases(aliases: {
1634
1547
  [x: string]: string;
1635
- }, lowerCaseAliases: {
1636
- [x: string]: string;
1637
1548
  }): void;
1638
1549
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1639
1550
  setLoadingP(p?: Promise<void>): void;
@@ -1653,6 +1564,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1653
1564
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1654
1565
  [x: string]: string;
1655
1566
  }>;
1567
+ afterCreate(): void;
1656
1568
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1657
1569
  getRefNameMapForAdapter(adapterConf: {
1658
1570
  [x: string]: unknown;