@jbrowse/product-core 3.5.0 → 3.5.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +42 -70
  2. package/dist/Session/MultipleViews.d.ts +132 -220
  3. package/dist/Session/SessionTracks.d.ts +132 -220
  4. package/dist/Session/Tracks.d.ts +132 -220
  5. package/esm/RootModel/BaseRootModel.d.ts +42 -70
  6. package/esm/Session/MultipleViews.d.ts +132 -220
  7. package/esm/Session/SessionTracks.d.ts +132 -220
  8. package/esm/Session/Tracks.d.ts +132 -220
  9. package/package.json +3 -3
package/esm/Session/SessionTracks.d.ts CHANGED
@@ -25,18 +25,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -51,22 +51,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -86,6 +81,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -95,18 +91,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -121,22 +117,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -156,6 +147,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  readonly assemblyNameMap: Record<string, {
@@ -167,18 +159,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -193,22 +185,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -228,6 +215,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -237,18 +225,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -263,22 +251,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -298,6 +281,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & {
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  get(asmName: string): ({
@@ -309,18 +293,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -335,22 +319,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -370,6 +349,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string;
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  }>;
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+ afterCreate(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
@@ -379,18 +359,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -405,22 +385,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
407
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  } & {
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- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
412
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  };
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
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- };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
420
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  setRefNameAliases(aliases: {
421
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  [x: string]: string;
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- }, lowerCaseAliases: {
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- [x: string]: string;
424
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
426
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  setLoadingP(p?: Promise<void>): void;
@@ -440,6 +415,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
440
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
441
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  [x: string]: string;
442
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  }>;
418
+ afterCreate(): void;
443
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
444
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  readonly assemblyNamesList: any[];
445
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  readonly assemblyList: AnyConfigurationModel[];
@@ -454,18 +430,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  refNameAliases: {
455
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  [x: string]: string;
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  } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string;
459
- } | undefined;
460
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
461
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  } & {
462
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  getConf(arg: string): any;
436
+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
438
+ } | undefined;
463
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
467
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  readonly aliases: string[];
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- readonly displayName: string | undefined;
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+ readonly displayName: string;
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  hasName(name: string): boolean;
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  readonly allAliases: string[];
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  readonly allRefNames: string[] | undefined;
@@ -480,22 +456,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  getRefNameColor(refName: string): string | undefined;
481
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  isValidRefName(refName: string): boolean;
482
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  } & {
483
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
459
+ setLoaded({ regions, refNameAliases, cytobands, }: {
484
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  regions: import("@jbrowse/core/util").Region[];
485
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  refNameAliases: {
486
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  [x: string]: string;
487
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  };
488
- lowerCaseRefNameAliases: {
489
- [x: string]: string;
490
- };
491
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  cytobands: import("@jbrowse/core/util").Feature[];
492
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  }): void;
493
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  setError(e: unknown): void;
494
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
495
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  setRefNameAliases(aliases: {
496
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  [x: string]: string;
497
- }, lowerCaseAliases: {
498
- [x: string]: string;
499
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  }): void;
500
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
501
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  setLoadingP(p?: Promise<void>): void;
@@ -515,6 +486,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
515
486
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
516
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  [x: string]: string;
517
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  }>;
489
+ afterCreate(): void;
518
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
519
491
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
520
492
  }, {
@@ -524,18 +496,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
524
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  refNameAliases: {
525
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  [x: string]: string;
526
498
  } | undefined;
527
- lowerCaseRefNameAliases: {
528
- [x: string]: string;
529
- } | undefined;
530
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
531
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  } & {
532
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  getConf(arg: string): any;
502
+ readonly lowerCaseRefNameAliases: {
503
+ [k: string]: string;
504
+ } | undefined;
533
505
  } & {
534
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  readonly initialized: boolean;
535
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  readonly name: string;
536
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  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
537
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  readonly aliases: string[];
538
- readonly displayName: string | undefined;
510
+ readonly displayName: string;
539
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  hasName(name: string): boolean;
540
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  readonly allAliases: string[];
541
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  readonly allRefNames: string[] | undefined;
@@ -550,22 +522,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
550
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  getRefNameColor(refName: string): string | undefined;
551
523
  isValidRefName(refName: string): boolean;
552
524
  } & {
553
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
525
+ setLoaded({ regions, refNameAliases, cytobands, }: {
554
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  regions: import("@jbrowse/core/util").Region[];
555
527
  refNameAliases: {
556
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  [x: string]: string;
557
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  };
558
- lowerCaseRefNameAliases: {
559
- [x: string]: string;
560
- };
561
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  cytobands: import("@jbrowse/core/util").Feature[];
562
531
  }): void;
563
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  setError(e: unknown): void;
564
533
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
565
534
  setRefNameAliases(aliases: {
566
535
  [x: string]: string;
567
- }, lowerCaseAliases: {
568
- [x: string]: string;
569
536
  }): void;
570
537
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
571
538
  setLoadingP(p?: Promise<void>): void;
@@ -585,6 +552,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
585
552
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
586
553
  [x: string]: string;
587
554
  }>;
555
+ afterCreate(): void;
588
556
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
589
557
  getRefNameMapForAdapter(adapterConf: {
590
558
  [x: string]: unknown;
@@ -617,18 +585,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
617
585
  refNameAliases: {
618
586
  [x: string]: string;
619
587
  } | undefined;
620
- lowerCaseRefNameAliases: {
621
- [x: string]: string;
622
- } | undefined;
623
588
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
624
589
  } & {
625
590
  getConf(arg: string): any;
591
+ readonly lowerCaseRefNameAliases: {
592
+ [k: string]: string;
593
+ } | undefined;
626
594
  } & {
627
595
  readonly initialized: boolean;
628
596
  readonly name: string;
629
597
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
630
598
  readonly aliases: string[];
631
- readonly displayName: string | undefined;
599
+ readonly displayName: string;
632
600
  hasName(name: string): boolean;
633
601
  readonly allAliases: string[];
634
602
  readonly allRefNames: string[] | undefined;
@@ -643,22 +611,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
643
611
  getRefNameColor(refName: string): string | undefined;
644
612
  isValidRefName(refName: string): boolean;
645
613
  } & {
646
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
614
+ setLoaded({ regions, refNameAliases, cytobands, }: {
647
615
  regions: import("@jbrowse/core/util").Region[];
648
616
  refNameAliases: {
649
617
  [x: string]: string;
650
618
  };
651
- lowerCaseRefNameAliases: {
652
- [x: string]: string;
653
- };
654
619
  cytobands: import("@jbrowse/core/util").Feature[];
655
620
  }): void;
656
621
  setError(e: unknown): void;
657
622
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
658
623
  setRefNameAliases(aliases: {
659
624
  [x: string]: string;
660
- }, lowerCaseAliases: {
661
- [x: string]: string;
662
625
  }): void;
663
626
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
664
627
  setLoadingP(p?: Promise<void>): void;
@@ -678,6 +641,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
678
641
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
679
642
  [x: string]: string;
680
643
  }>;
644
+ afterCreate(): void;
681
645
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
682
646
  }, {
683
647
  readonly assemblyNameMap: Record<string, {
@@ -689,18 +653,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
689
653
  refNameAliases: {
690
654
  [x: string]: string;
691
655
  } | undefined;
692
- lowerCaseRefNameAliases: {
693
- [x: string]: string;
694
- } | undefined;
695
656
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
696
657
  } & {
697
658
  getConf(arg: string): any;
659
+ readonly lowerCaseRefNameAliases: {
660
+ [k: string]: string;
661
+ } | undefined;
698
662
  } & {
699
663
  readonly initialized: boolean;
700
664
  readonly name: string;
701
665
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
702
666
  readonly aliases: string[];
703
- readonly displayName: string | undefined;
667
+ readonly displayName: string;
704
668
  hasName(name: string): boolean;
705
669
  readonly allAliases: string[];
706
670
  readonly allRefNames: string[] | undefined;
@@ -715,22 +679,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
715
679
  getRefNameColor(refName: string): string | undefined;
716
680
  isValidRefName(refName: string): boolean;
717
681
  } & {
718
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
682
+ setLoaded({ regions, refNameAliases, cytobands, }: {
719
683
  regions: import("@jbrowse/core/util").Region[];
720
684
  refNameAliases: {
721
685
  [x: string]: string;
722
686
  };
723
- lowerCaseRefNameAliases: {
724
- [x: string]: string;
725
- };
726
687
  cytobands: import("@jbrowse/core/util").Feature[];
727
688
  }): void;
728
689
  setError(e: unknown): void;
729
690
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
730
691
  setRefNameAliases(aliases: {
731
692
  [x: string]: string;
732
- }, lowerCaseAliases: {
733
- [x: string]: string;
734
693
  }): void;
735
694
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
736
695
  setLoadingP(p?: Promise<void>): void;
@@ -750,6 +709,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
750
709
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
751
710
  [x: string]: string;
752
711
  }>;
712
+ afterCreate(): void;
753
713
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
754
714
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
755
715
  }, {
@@ -759,18 +719,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
759
719
  refNameAliases: {
760
720
  [x: string]: string;
761
721
  } | undefined;
762
- lowerCaseRefNameAliases: {
763
- [x: string]: string;
764
- } | undefined;
765
722
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
766
723
  } & {
767
724
  getConf(arg: string): any;
725
+ readonly lowerCaseRefNameAliases: {
726
+ [k: string]: string;
727
+ } | undefined;
768
728
  } & {
769
729
  readonly initialized: boolean;
770
730
  readonly name: string;
771
731
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
772
732
  readonly aliases: string[];
773
- readonly displayName: string | undefined;
733
+ readonly displayName: string;
774
734
  hasName(name: string): boolean;
775
735
  readonly allAliases: string[];
776
736
  readonly allRefNames: string[] | undefined;
@@ -785,22 +745,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
785
745
  getRefNameColor(refName: string): string | undefined;
786
746
  isValidRefName(refName: string): boolean;
787
747
  } & {
788
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
748
+ setLoaded({ regions, refNameAliases, cytobands, }: {
789
749
  regions: import("@jbrowse/core/util").Region[];
790
750
  refNameAliases: {
791
751
  [x: string]: string;
792
752
  };
793
- lowerCaseRefNameAliases: {
794
- [x: string]: string;
795
- };
796
753
  cytobands: import("@jbrowse/core/util").Feature[];
797
754
  }): void;
798
755
  setError(e: unknown): void;
799
756
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
800
757
  setRefNameAliases(aliases: {
801
758
  [x: string]: string;
802
- }, lowerCaseAliases: {
803
- [x: string]: string;
804
759
  }): void;
805
760
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
806
761
  setLoadingP(p?: Promise<void>): void;
@@ -820,6 +775,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
820
775
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
821
776
  [x: string]: string;
822
777
  }>;
778
+ afterCreate(): void;
823
779
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
824
780
  } & {
825
781
  get(asmName: string): ({
@@ -831,18 +787,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
831
787
  refNameAliases: {
832
788
  [x: string]: string;
833
789
  } | undefined;
834
- lowerCaseRefNameAliases: {
835
- [x: string]: string;
836
- } | undefined;
837
790
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
838
791
  } & {
839
792
  getConf(arg: string): any;
793
+ readonly lowerCaseRefNameAliases: {
794
+ [k: string]: string;
795
+ } | undefined;
840
796
  } & {
841
797
  readonly initialized: boolean;
842
798
  readonly name: string;
843
799
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
844
800
  readonly aliases: string[];
845
- readonly displayName: string | undefined;
801
+ readonly displayName: string;
846
802
  hasName(name: string): boolean;
847
803
  readonly allAliases: string[];
848
804
  readonly allRefNames: string[] | undefined;
@@ -857,22 +813,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
857
813
  getRefNameColor(refName: string): string | undefined;
858
814
  isValidRefName(refName: string): boolean;
859
815
  } & {
860
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
816
+ setLoaded({ regions, refNameAliases, cytobands, }: {
861
817
  regions: import("@jbrowse/core/util").Region[];
862
818
  refNameAliases: {
863
819
  [x: string]: string;
864
820
  };
865
- lowerCaseRefNameAliases: {
866
- [x: string]: string;
867
- };
868
821
  cytobands: import("@jbrowse/core/util").Feature[];
869
822
  }): void;
870
823
  setError(e: unknown): void;
871
824
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
872
825
  setRefNameAliases(aliases: {
873
826
  [x: string]: string;
874
- }, lowerCaseAliases: {
875
- [x: string]: string;
876
827
  }): void;
877
828
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
878
829
  setLoadingP(p?: Promise<void>): void;
@@ -892,6 +843,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
892
843
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
893
844
  [x: string]: string;
894
845
  }>;
846
+ afterCreate(): void;
895
847
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
896
848
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
897
849
  }, {
@@ -901,18 +853,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
901
853
  refNameAliases: {
902
854
  [x: string]: string;
903
855
  } | undefined;
904
- lowerCaseRefNameAliases: {
905
- [x: string]: string;
906
- } | undefined;
907
856
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
908
857
  } & {
909
858
  getConf(arg: string): any;
859
+ readonly lowerCaseRefNameAliases: {
860
+ [k: string]: string;
861
+ } | undefined;
910
862
  } & {
911
863
  readonly initialized: boolean;
912
864
  readonly name: string;
913
865
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
914
866
  readonly aliases: string[];
915
- readonly displayName: string | undefined;
867
+ readonly displayName: string;
916
868
  hasName(name: string): boolean;
917
869
  readonly allAliases: string[];
918
870
  readonly allRefNames: string[] | undefined;
@@ -927,22 +879,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
927
879
  getRefNameColor(refName: string): string | undefined;
928
880
  isValidRefName(refName: string): boolean;
929
881
  } & {
930
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
882
+ setLoaded({ regions, refNameAliases, cytobands, }: {
931
883
  regions: import("@jbrowse/core/util").Region[];
932
884
  refNameAliases: {
933
885
  [x: string]: string;
934
886
  };
935
- lowerCaseRefNameAliases: {
936
- [x: string]: string;
937
- };
938
887
  cytobands: import("@jbrowse/core/util").Feature[];
939
888
  }): void;
940
889
  setError(e: unknown): void;
941
890
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
942
891
  setRefNameAliases(aliases: {
943
892
  [x: string]: string;
944
- }, lowerCaseAliases: {
945
- [x: string]: string;
946
893
  }): void;
947
894
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
948
895
  setLoadingP(p?: Promise<void>): void;
@@ -962,6 +909,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
962
909
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
963
910
  [x: string]: string;
964
911
  }>;
912
+ afterCreate(): void;
965
913
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
966
914
  readonly assemblyNamesList: any[];
967
915
  readonly assemblyList: AnyConfigurationModel[];
@@ -976,18 +924,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
976
924
  refNameAliases: {
977
925
  [x: string]: string;
978
926
  } | undefined;
979
- lowerCaseRefNameAliases: {
980
- [x: string]: string;
981
- } | undefined;
982
927
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
983
928
  } & {
984
929
  getConf(arg: string): any;
930
+ readonly lowerCaseRefNameAliases: {
931
+ [k: string]: string;
932
+ } | undefined;
985
933
  } & {
986
934
  readonly initialized: boolean;
987
935
  readonly name: string;
988
936
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
989
937
  readonly aliases: string[];
990
- readonly displayName: string | undefined;
938
+ readonly displayName: string;
991
939
  hasName(name: string): boolean;
992
940
  readonly allAliases: string[];
993
941
  readonly allRefNames: string[] | undefined;
@@ -1002,22 +950,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1002
950
  getRefNameColor(refName: string): string | undefined;
1003
951
  isValidRefName(refName: string): boolean;
1004
952
  } & {
1005
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
953
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1006
954
  regions: import("@jbrowse/core/util").Region[];
1007
955
  refNameAliases: {
1008
956
  [x: string]: string;
1009
957
  };
1010
- lowerCaseRefNameAliases: {
1011
- [x: string]: string;
1012
- };
1013
958
  cytobands: import("@jbrowse/core/util").Feature[];
1014
959
  }): void;
1015
960
  setError(e: unknown): void;
1016
961
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1017
962
  setRefNameAliases(aliases: {
1018
963
  [x: string]: string;
1019
- }, lowerCaseAliases: {
1020
- [x: string]: string;
1021
964
  }): void;
1022
965
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1023
966
  setLoadingP(p?: Promise<void>): void;
@@ -1037,6 +980,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1037
980
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1038
981
  [x: string]: string;
1039
982
  }>;
983
+ afterCreate(): void;
1040
984
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1041
985
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1042
986
  }, {
@@ -1046,18 +990,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1046
990
  refNameAliases: {
1047
991
  [x: string]: string;
1048
992
  } | undefined;
1049
- lowerCaseRefNameAliases: {
1050
- [x: string]: string;
1051
- } | undefined;
1052
993
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1053
994
  } & {
1054
995
  getConf(arg: string): any;
996
+ readonly lowerCaseRefNameAliases: {
997
+ [k: string]: string;
998
+ } | undefined;
1055
999
  } & {
1056
1000
  readonly initialized: boolean;
1057
1001
  readonly name: string;
1058
1002
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1059
1003
  readonly aliases: string[];
1060
- readonly displayName: string | undefined;
1004
+ readonly displayName: string;
1061
1005
  hasName(name: string): boolean;
1062
1006
  readonly allAliases: string[];
1063
1007
  readonly allRefNames: string[] | undefined;
@@ -1072,22 +1016,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1072
1016
  getRefNameColor(refName: string): string | undefined;
1073
1017
  isValidRefName(refName: string): boolean;
1074
1018
  } & {
1075
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1019
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1076
1020
  regions: import("@jbrowse/core/util").Region[];
1077
1021
  refNameAliases: {
1078
1022
  [x: string]: string;
1079
1023
  };
1080
- lowerCaseRefNameAliases: {
1081
- [x: string]: string;
1082
- };
1083
1024
  cytobands: import("@jbrowse/core/util").Feature[];
1084
1025
  }): void;
1085
1026
  setError(e: unknown): void;
1086
1027
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1087
1028
  setRefNameAliases(aliases: {
1088
1029
  [x: string]: string;
1089
- }, lowerCaseAliases: {
1090
- [x: string]: string;
1091
1030
  }): void;
1092
1031
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1093
1032
  setLoadingP(p?: Promise<void>): void;
@@ -1107,6 +1046,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1107
1046
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1108
1047
  [x: string]: string;
1109
1048
  }>;
1049
+ afterCreate(): void;
1110
1050
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1111
1051
  getRefNameMapForAdapter(adapterConf: {
1112
1052
  [x: string]: unknown;
@@ -1156,18 +1096,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1156
1096
  refNameAliases: {
1157
1097
  [x: string]: string;
1158
1098
  } | undefined;
1159
- lowerCaseRefNameAliases: {
1160
- [x: string]: string;
1161
- } | undefined;
1162
1099
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1163
1100
  } & {
1164
1101
  getConf(arg: string): any;
1102
+ readonly lowerCaseRefNameAliases: {
1103
+ [k: string]: string;
1104
+ } | undefined;
1165
1105
  } & {
1166
1106
  readonly initialized: boolean;
1167
1107
  readonly name: string;
1168
1108
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1169
1109
  readonly aliases: string[];
1170
- readonly displayName: string | undefined;
1110
+ readonly displayName: string;
1171
1111
  hasName(name: string): boolean;
1172
1112
  readonly allAliases: string[];
1173
1113
  readonly allRefNames: string[] | undefined;
@@ -1182,22 +1122,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1182
1122
  getRefNameColor(refName: string): string | undefined;
1183
1123
  isValidRefName(refName: string): boolean;
1184
1124
  } & {
1185
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1125
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1186
1126
  regions: import("@jbrowse/core/util").Region[];
1187
1127
  refNameAliases: {
1188
1128
  [x: string]: string;
1189
1129
  };
1190
- lowerCaseRefNameAliases: {
1191
- [x: string]: string;
1192
- };
1193
1130
  cytobands: import("@jbrowse/core/util").Feature[];
1194
1131
  }): void;
1195
1132
  setError(e: unknown): void;
1196
1133
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1197
1134
  setRefNameAliases(aliases: {
1198
1135
  [x: string]: string;
1199
- }, lowerCaseAliases: {
1200
- [x: string]: string;
1201
1136
  }): void;
1202
1137
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1203
1138
  setLoadingP(p?: Promise<void>): void;
@@ -1217,6 +1152,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1217
1152
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1218
1153
  [x: string]: string;
1219
1154
  }>;
1155
+ afterCreate(): void;
1220
1156
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1221
1157
  }, {
1222
1158
  readonly assemblyNameMap: Record<string, {
@@ -1228,18 +1164,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1228
1164
  refNameAliases: {
1229
1165
  [x: string]: string;
1230
1166
  } | undefined;
1231
- lowerCaseRefNameAliases: {
1232
- [x: string]: string;
1233
- } | undefined;
1234
1167
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1235
1168
  } & {
1236
1169
  getConf(arg: string): any;
1170
+ readonly lowerCaseRefNameAliases: {
1171
+ [k: string]: string;
1172
+ } | undefined;
1237
1173
  } & {
1238
1174
  readonly initialized: boolean;
1239
1175
  readonly name: string;
1240
1176
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1241
1177
  readonly aliases: string[];
1242
- readonly displayName: string | undefined;
1178
+ readonly displayName: string;
1243
1179
  hasName(name: string): boolean;
1244
1180
  readonly allAliases: string[];
1245
1181
  readonly allRefNames: string[] | undefined;
@@ -1254,22 +1190,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1254
1190
  getRefNameColor(refName: string): string | undefined;
1255
1191
  isValidRefName(refName: string): boolean;
1256
1192
  } & {
1257
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1193
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1258
1194
  regions: import("@jbrowse/core/util").Region[];
1259
1195
  refNameAliases: {
1260
1196
  [x: string]: string;
1261
1197
  };
1262
- lowerCaseRefNameAliases: {
1263
- [x: string]: string;
1264
- };
1265
1198
  cytobands: import("@jbrowse/core/util").Feature[];
1266
1199
  }): void;
1267
1200
  setError(e: unknown): void;
1268
1201
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1269
1202
  setRefNameAliases(aliases: {
1270
1203
  [x: string]: string;
1271
- }, lowerCaseAliases: {
1272
- [x: string]: string;
1273
1204
  }): void;
1274
1205
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1275
1206
  setLoadingP(p?: Promise<void>): void;
@@ -1289,6 +1220,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1289
1220
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1290
1221
  [x: string]: string;
1291
1222
  }>;
1223
+ afterCreate(): void;
1292
1224
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1293
1225
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1294
1226
  }, {
@@ -1298,18 +1230,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1298
1230
  refNameAliases: {
1299
1231
  [x: string]: string;
1300
1232
  } | undefined;
1301
- lowerCaseRefNameAliases: {
1302
- [x: string]: string;
1303
- } | undefined;
1304
1233
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1305
1234
  } & {
1306
1235
  getConf(arg: string): any;
1236
+ readonly lowerCaseRefNameAliases: {
1237
+ [k: string]: string;
1238
+ } | undefined;
1307
1239
  } & {
1308
1240
  readonly initialized: boolean;
1309
1241
  readonly name: string;
1310
1242
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1311
1243
  readonly aliases: string[];
1312
- readonly displayName: string | undefined;
1244
+ readonly displayName: string;
1313
1245
  hasName(name: string): boolean;
1314
1246
  readonly allAliases: string[];
1315
1247
  readonly allRefNames: string[] | undefined;
@@ -1324,22 +1256,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1324
1256
  getRefNameColor(refName: string): string | undefined;
1325
1257
  isValidRefName(refName: string): boolean;
1326
1258
  } & {
1327
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1259
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1328
1260
  regions: import("@jbrowse/core/util").Region[];
1329
1261
  refNameAliases: {
1330
1262
  [x: string]: string;
1331
1263
  };
1332
- lowerCaseRefNameAliases: {
1333
- [x: string]: string;
1334
- };
1335
1264
  cytobands: import("@jbrowse/core/util").Feature[];
1336
1265
  }): void;
1337
1266
  setError(e: unknown): void;
1338
1267
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1339
1268
  setRefNameAliases(aliases: {
1340
1269
  [x: string]: string;
1341
- }, lowerCaseAliases: {
1342
- [x: string]: string;
1343
1270
  }): void;
1344
1271
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1345
1272
  setLoadingP(p?: Promise<void>): void;
@@ -1359,6 +1286,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1359
1286
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1360
1287
  [x: string]: string;
1361
1288
  }>;
1289
+ afterCreate(): void;
1362
1290
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1363
1291
  } & {
1364
1292
  get(asmName: string): ({
@@ -1370,18 +1298,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1370
1298
  refNameAliases: {
1371
1299
  [x: string]: string;
1372
1300
  } | undefined;
1373
- lowerCaseRefNameAliases: {
1374
- [x: string]: string;
1375
- } | undefined;
1376
1301
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1377
1302
  } & {
1378
1303
  getConf(arg: string): any;
1304
+ readonly lowerCaseRefNameAliases: {
1305
+ [k: string]: string;
1306
+ } | undefined;
1379
1307
  } & {
1380
1308
  readonly initialized: boolean;
1381
1309
  readonly name: string;
1382
1310
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1383
1311
  readonly aliases: string[];
1384
- readonly displayName: string | undefined;
1312
+ readonly displayName: string;
1385
1313
  hasName(name: string): boolean;
1386
1314
  readonly allAliases: string[];
1387
1315
  readonly allRefNames: string[] | undefined;
@@ -1396,22 +1324,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1396
1324
  getRefNameColor(refName: string): string | undefined;
1397
1325
  isValidRefName(refName: string): boolean;
1398
1326
  } & {
1399
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1327
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1400
1328
  regions: import("@jbrowse/core/util").Region[];
1401
1329
  refNameAliases: {
1402
1330
  [x: string]: string;
1403
1331
  };
1404
- lowerCaseRefNameAliases: {
1405
- [x: string]: string;
1406
- };
1407
1332
  cytobands: import("@jbrowse/core/util").Feature[];
1408
1333
  }): void;
1409
1334
  setError(e: unknown): void;
1410
1335
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1411
1336
  setRefNameAliases(aliases: {
1412
1337
  [x: string]: string;
1413
- }, lowerCaseAliases: {
1414
- [x: string]: string;
1415
1338
  }): void;
1416
1339
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1417
1340
  setLoadingP(p?: Promise<void>): void;
@@ -1431,6 +1354,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1431
1354
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1432
1355
  [x: string]: string;
1433
1356
  }>;
1357
+ afterCreate(): void;
1434
1358
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1435
1359
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1436
1360
  }, {
@@ -1440,18 +1364,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1440
1364
  refNameAliases: {
1441
1365
  [x: string]: string;
1442
1366
  } | undefined;
1443
- lowerCaseRefNameAliases: {
1444
- [x: string]: string;
1445
- } | undefined;
1446
1367
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1447
1368
  } & {
1448
1369
  getConf(arg: string): any;
1370
+ readonly lowerCaseRefNameAliases: {
1371
+ [k: string]: string;
1372
+ } | undefined;
1449
1373
  } & {
1450
1374
  readonly initialized: boolean;
1451
1375
  readonly name: string;
1452
1376
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1453
1377
  readonly aliases: string[];
1454
- readonly displayName: string | undefined;
1378
+ readonly displayName: string;
1455
1379
  hasName(name: string): boolean;
1456
1380
  readonly allAliases: string[];
1457
1381
  readonly allRefNames: string[] | undefined;
@@ -1466,22 +1390,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1466
1390
  getRefNameColor(refName: string): string | undefined;
1467
1391
  isValidRefName(refName: string): boolean;
1468
1392
  } & {
1469
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1393
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1470
1394
  regions: import("@jbrowse/core/util").Region[];
1471
1395
  refNameAliases: {
1472
1396
  [x: string]: string;
1473
1397
  };
1474
- lowerCaseRefNameAliases: {
1475
- [x: string]: string;
1476
- };
1477
1398
  cytobands: import("@jbrowse/core/util").Feature[];
1478
1399
  }): void;
1479
1400
  setError(e: unknown): void;
1480
1401
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1481
1402
  setRefNameAliases(aliases: {
1482
1403
  [x: string]: string;
1483
- }, lowerCaseAliases: {
1484
- [x: string]: string;
1485
1404
  }): void;
1486
1405
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1487
1406
  setLoadingP(p?: Promise<void>): void;
@@ -1501,6 +1420,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1501
1420
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1502
1421
  [x: string]: string;
1503
1422
  }>;
1423
+ afterCreate(): void;
1504
1424
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1505
1425
  readonly assemblyNamesList: any[];
1506
1426
  readonly assemblyList: AnyConfigurationModel[];
@@ -1515,18 +1435,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1515
1435
  refNameAliases: {
1516
1436
  [x: string]: string;
1517
1437
  } | undefined;
1518
- lowerCaseRefNameAliases: {
1519
- [x: string]: string;
1520
- } | undefined;
1521
1438
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1522
1439
  } & {
1523
1440
  getConf(arg: string): any;
1441
+ readonly lowerCaseRefNameAliases: {
1442
+ [k: string]: string;
1443
+ } | undefined;
1524
1444
  } & {
1525
1445
  readonly initialized: boolean;
1526
1446
  readonly name: string;
1527
1447
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1528
1448
  readonly aliases: string[];
1529
- readonly displayName: string | undefined;
1449
+ readonly displayName: string;
1530
1450
  hasName(name: string): boolean;
1531
1451
  readonly allAliases: string[];
1532
1452
  readonly allRefNames: string[] | undefined;
@@ -1541,22 +1461,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1541
1461
  getRefNameColor(refName: string): string | undefined;
1542
1462
  isValidRefName(refName: string): boolean;
1543
1463
  } & {
1544
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1464
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1545
1465
  regions: import("@jbrowse/core/util").Region[];
1546
1466
  refNameAliases: {
1547
1467
  [x: string]: string;
1548
1468
  };
1549
- lowerCaseRefNameAliases: {
1550
- [x: string]: string;
1551
- };
1552
1469
  cytobands: import("@jbrowse/core/util").Feature[];
1553
1470
  }): void;
1554
1471
  setError(e: unknown): void;
1555
1472
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1556
1473
  setRefNameAliases(aliases: {
1557
1474
  [x: string]: string;
1558
- }, lowerCaseAliases: {
1559
- [x: string]: string;
1560
1475
  }): void;
1561
1476
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1562
1477
  setLoadingP(p?: Promise<void>): void;
@@ -1576,6 +1491,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1576
1491
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1577
1492
  [x: string]: string;
1578
1493
  }>;
1494
+ afterCreate(): void;
1579
1495
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1580
1496
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1581
1497
  }, {
@@ -1585,18 +1501,18 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1585
1501
  refNameAliases: {
1586
1502
  [x: string]: string;
1587
1503
  } | undefined;
1588
- lowerCaseRefNameAliases: {
1589
- [x: string]: string;
1590
- } | undefined;
1591
1504
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1592
1505
  } & {
1593
1506
  getConf(arg: string): any;
1507
+ readonly lowerCaseRefNameAliases: {
1508
+ [k: string]: string;
1509
+ } | undefined;
1594
1510
  } & {
1595
1511
  readonly initialized: boolean;
1596
1512
  readonly name: string;
1597
1513
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1598
1514
  readonly aliases: string[];
1599
- readonly displayName: string | undefined;
1515
+ readonly displayName: string;
1600
1516
  hasName(name: string): boolean;
1601
1517
  readonly allAliases: string[];
1602
1518
  readonly allRefNames: string[] | undefined;
@@ -1611,22 +1527,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1611
1527
  getRefNameColor(refName: string): string | undefined;
1612
1528
  isValidRefName(refName: string): boolean;
1613
1529
  } & {
1614
- setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1530
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1615
1531
  regions: import("@jbrowse/core/util").Region[];
1616
1532
  refNameAliases: {
1617
1533
  [x: string]: string;
1618
1534
  };
1619
- lowerCaseRefNameAliases: {
1620
- [x: string]: string;
1621
- };
1622
1535
  cytobands: import("@jbrowse/core/util").Feature[];
1623
1536
  }): void;
1624
1537
  setError(e: unknown): void;
1625
1538
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1626
1539
  setRefNameAliases(aliases: {
1627
1540
  [x: string]: string;
1628
- }, lowerCaseAliases: {
1629
- [x: string]: string;
1630
1541
  }): void;
1631
1542
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1632
1543
  setLoadingP(p?: Promise<void>): void;
@@ -1646,6 +1557,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1646
1557
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1647
1558
  [x: string]: string;
1648
1559
  }>;
1560
+ afterCreate(): void;
1649
1561
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1650
1562
  getRefNameMapForAdapter(adapterConf: {
1651
1563
  [x: string]: unknown;