@jbrowse/product-core 2.6.3 → 2.7.0

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Files changed (33) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +136 -115
  2. package/dist/RootModel/HierarchicalConfig.d.ts +3 -3
  3. package/dist/RootModel/HierarchicalConfig.js +3 -3
  4. package/dist/Session/BaseSession.d.ts +13 -6
  5. package/dist/Session/BaseSession.js +3 -6
  6. package/dist/Session/Connections.d.ts +1 -2
  7. package/dist/Session/DialogQueue.d.ts +1 -1
  8. package/dist/Session/DialogQueue.js +1 -1
  9. package/dist/Session/MultipleViews.d.ts +396 -353
  10. package/dist/Session/ReferenceManagement.d.ts +1 -1
  11. package/dist/Session/ReferenceManagement.js +1 -1
  12. package/dist/Session/SessionTracks.d.ts +389 -351
  13. package/dist/Session/Themes.d.ts +2 -4
  14. package/dist/Session/Themes.js +1 -1
  15. package/dist/Session/Tracks.d.ts +387 -337
  16. package/dist/rpcWorker.js +0 -1
  17. package/esm/RootModel/BaseRootModel.d.ts +136 -115
  18. package/esm/RootModel/HierarchicalConfig.d.ts +3 -3
  19. package/esm/RootModel/HierarchicalConfig.js +3 -3
  20. package/esm/Session/BaseSession.d.ts +13 -6
  21. package/esm/Session/BaseSession.js +3 -3
  22. package/esm/Session/Connections.d.ts +1 -2
  23. package/esm/Session/DialogQueue.d.ts +1 -1
  24. package/esm/Session/DialogQueue.js +1 -1
  25. package/esm/Session/MultipleViews.d.ts +396 -353
  26. package/esm/Session/ReferenceManagement.d.ts +1 -1
  27. package/esm/Session/ReferenceManagement.js +1 -1
  28. package/esm/Session/SessionTracks.d.ts +389 -351
  29. package/esm/Session/Themes.d.ts +2 -4
  30. package/esm/Session/Themes.js +1 -1
  31. package/esm/Session/Tracks.d.ts +387 -337
  32. package/esm/rpcWorker.js +0 -1
  33. package/package.json +7 -7
package/dist/rpcWorker.js CHANGED
@@ -4,7 +4,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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6
  exports.initializeWorker = void 0;
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- /* eslint-disable no-restricted-globals */
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  const librpc_web_mod_1 = __importDefault(require("librpc-web-mod"));
9
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  const PluginManager_1 = __importDefault(require("@jbrowse/core/PluginManager"));
10
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  const remoteAbortSignals_1 = require("@jbrowse/core/rpc/remoteAbortSignals");
package/esm/RootModel/BaseRootModel.d.ts CHANGED
@@ -48,6 +48,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
51
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  } & {
52
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  readonly initialized: boolean;
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  readonly name: string;
@@ -70,7 +72,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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72
  } & {
71
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  setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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  setError(e: unknown): void;
73
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
75
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void; /**
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+ * #action
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+ */
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  setRefNameAliases(aliases: {
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  [x: string]: string | undefined;
76
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  }, lcAliases: {
@@ -85,123 +89,124 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
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  }>;
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- /** Type guard for checking if something is a JB root model */
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  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
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  }>;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }, {
94
- readonly assemblyNameMap: {
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- [key: string]: ({
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- configuration: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
107
- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly initialized: boolean;
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- readonly name: string;
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- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- readonly aliases: string[];
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- readonly displayName: string | undefined;
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- hasName(name: string): boolean;
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- readonly allAliases: string[];
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- readonly allRefNames: string[] | undefined;
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- readonly lowerCaseRefNames: string[] | undefined;
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- readonly allRefNamesWithLowerCase: string[] | undefined;
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- readonly rpcManager: RpcManager;
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- readonly refNameColors: string[];
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- } & {
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- readonly refNames: string[] | undefined;
124
- } & {
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- getCanonicalRefName(refName: string): string | undefined;
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- getRefNameColor(refName: string): string | undefined;
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- isValidRefName(refName: string): boolean;
128
- } & {
129
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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- setError(e: unknown): void;
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- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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- setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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- }): void;
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- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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- setLoadingP(p?: Promise<void> | undefined): void;
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- load(): Promise<void>;
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- loadPre(): Promise<void>;
141
- } & {
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- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
145
- }>;
146
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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- }>;
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- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
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- }, {
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- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
156
- refNameAliases: {
157
- [x: string]: string | undefined;
158
- } | undefined;
159
- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
161
- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
163
- } & {
164
- readonly initialized: boolean;
165
- readonly name: string;
166
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
167
- readonly aliases: string[];
168
- readonly displayName: string | undefined;
169
- hasName(name: string): boolean;
170
- readonly allAliases: string[];
171
- readonly allRefNames: string[] | undefined;
172
- readonly lowerCaseRefNames: string[] | undefined;
173
- readonly allRefNamesWithLowerCase: string[] | undefined;
174
- readonly rpcManager: RpcManager;
175
- readonly refNameColors: string[];
176
- } & {
177
- readonly refNames: string[] | undefined;
178
- } & {
179
- getCanonicalRefName(refName: string): string | undefined;
180
- getRefNameColor(refName: string): string | undefined;
181
- isValidRefName(refName: string): boolean;
182
- } & {
183
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
184
- setError(e: unknown): void;
185
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
186
- setRefNameAliases(aliases: {
187
- [x: string]: string | undefined;
188
- }, lcAliases: {
189
- [x: string]: string | undefined;
190
- }): void;
191
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
192
- setLoadingP(p?: Promise<void> | undefined): void;
193
- load(): Promise<void>;
194
- loadPre(): Promise<void>;
195
- } & {
196
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
197
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
198
- [x: string]: string | undefined;
199
- }>;
200
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
201
- [x: string]: string | undefined;
202
- }>;
203
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
204
- };
97
+ readonly assemblyNameMap: Record<string, ({
98
+ configuration: any;
99
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
100
+ error: unknown;
101
+ loaded: boolean;
102
+ loadingP: Promise<void> | undefined;
103
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
104
+ refNameAliases: {
105
+ [x: string]: string | undefined;
106
+ } | undefined;
107
+ lowerCaseRefNameAliases: {
108
+ [x: string]: string | undefined;
109
+ } | undefined;
110
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
111
+ } & {
112
+ getConf(arg: string): any;
113
+ } & {
114
+ readonly initialized: boolean;
115
+ readonly name: string;
116
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
117
+ readonly aliases: string[];
118
+ readonly displayName: string | undefined;
119
+ hasName(name: string): boolean;
120
+ readonly allAliases: string[];
121
+ readonly allRefNames: string[] | undefined;
122
+ readonly lowerCaseRefNames: string[] | undefined;
123
+ readonly allRefNamesWithLowerCase: string[] | undefined;
124
+ readonly rpcManager: RpcManager;
125
+ readonly refNameColors: string[];
126
+ } & {
127
+ readonly refNames: string[] | undefined;
128
+ } & {
129
+ getCanonicalRefName(refName: string): string | undefined;
130
+ getRefNameColor(refName: string): string | undefined;
131
+ isValidRefName(refName: string): boolean;
132
+ } & {
133
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
134
+ setError(e: unknown): void;
135
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
136
+ setRefNameAliases(aliases: {
137
+ [x: string]: string | undefined;
138
+ }, lcAliases: {
139
+ [x: string]: string | undefined;
140
+ }): void;
141
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
142
+ setLoadingP(p?: Promise<void> | undefined): void;
143
+ load(): Promise<void>;
144
+ loadPre(): Promise<void>;
145
+ } & {
146
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
147
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
148
+ [x: string]: string | undefined;
149
+ }>;
150
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
151
+ [x: string]: string | undefined;
152
+ }>;
153
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
154
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
155
+ }, {
156
+ error: unknown;
157
+ loaded: boolean;
158
+ loadingP: Promise<void> | undefined;
159
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
160
+ refNameAliases: {
161
+ [x: string]: string | undefined;
162
+ } | undefined;
163
+ lowerCaseRefNameAliases: {
164
+ [x: string]: string | undefined;
165
+ } | undefined;
166
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
167
+ } & {
168
+ getConf(arg: string): any;
169
+ } & {
170
+ readonly initialized: boolean;
171
+ readonly name: string;
172
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
173
+ readonly aliases: string[];
174
+ readonly displayName: string | undefined;
175
+ hasName(name: string): boolean;
176
+ readonly allAliases: string[];
177
+ readonly allRefNames: string[] | undefined;
178
+ readonly lowerCaseRefNames: string[] | undefined;
179
+ readonly allRefNamesWithLowerCase: string[] | undefined;
180
+ readonly rpcManager: RpcManager;
181
+ readonly refNameColors: string[];
182
+ } & {
183
+ readonly refNames: string[] | undefined;
184
+ } & {
185
+ getCanonicalRefName(refName: string): string | undefined;
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+ getRefNameColor(refName: string): string | undefined;
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+ isValidRefName(refName: string): boolean;
188
+ } & {
189
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
190
+ setError(e: unknown): void;
191
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
192
+ setRefNameAliases(aliases: {
193
+ [x: string]: string | undefined;
194
+ }, lcAliases: {
195
+ [x: string]: string | undefined;
196
+ }): void;
197
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
198
+ setLoadingP(p?: Promise<void> | undefined): void;
199
+ load(): Promise<void>;
200
+ loadPre(): Promise<void>;
201
+ } & {
202
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
203
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
204
+ [x: string]: string | undefined;
205
+ }>;
206
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
207
+ [x: string]: string | undefined;
208
+ }>;
209
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
205
210
  } & {
206
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  get(asmName: string): ({
207
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  configuration: any;
@@ -217,6 +222,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
217
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  [x: string]: string | undefined;
218
223
  } | undefined;
219
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
225
+ } & {
226
+ getConf(arg: string): any;
220
227
  } & {
221
228
  readonly initialized: boolean;
222
229
  readonly name: string;
@@ -271,6 +278,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
271
278
  [x: string]: string | undefined;
272
279
  } | undefined;
273
280
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
281
+ } & {
282
+ getConf(arg: string): any;
274
283
  } & {
275
284
  readonly initialized: boolean;
276
285
  readonly name: string;
@@ -334,6 +343,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
334
343
  [x: string]: string | undefined;
335
344
  } | undefined;
336
345
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
346
+ } & {
347
+ getConf(arg: string): any;
337
348
  } & {
338
349
  readonly initialized: boolean;
339
350
  readonly name: string;
@@ -388,6 +399,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
388
399
  [x: string]: string | undefined;
389
400
  } | undefined;
390
401
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
402
+ } & {
403
+ getConf(arg: string): any;
391
404
  } & {
392
405
  readonly initialized: boolean;
393
406
  readonly name: string;
@@ -464,6 +477,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
464
477
  * #property
465
478
  */
466
479
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
480
+ } & {
481
+ getConf(arg: string): any;
467
482
  } & {
468
483
  readonly initialized: boolean;
469
484
  readonly name: string;
@@ -476,7 +491,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
476
491
  readonly lowerCaseRefNames: string[] | undefined;
477
492
  readonly allRefNamesWithLowerCase: string[] | undefined;
478
493
  readonly rpcManager: RpcManager;
479
- readonly refNameColors: string[];
494
+ readonly refNameColors: string[]; /**
495
+ * #action
496
+ */
480
497
  } & {
481
498
  readonly refNames: string[] | undefined;
482
499
  } & {
@@ -524,6 +541,8 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
524
541
  * #property
525
542
  */
526
543
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
544
+ } & {
545
+ getConf(arg: string): any;
527
546
  } & {
528
547
  readonly initialized: boolean;
529
548
  readonly name: string;
@@ -536,7 +555,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
536
555
  readonly lowerCaseRefNames: string[] | undefined;
537
556
  readonly allRefNamesWithLowerCase: string[] | undefined;
538
557
  readonly rpcManager: RpcManager;
539
- readonly refNameColors: string[];
558
+ readonly refNameColors: string[]; /**
559
+ * #action
560
+ */
540
561
  } & {
541
562
  readonly refNames: string[] | undefined;
542
563
  } & {
package/esm/RootModel/HierarchicalConfig.d.ts CHANGED
@@ -21,21 +21,21 @@ export declare function HierarchicalConfigSchemaFactory(): import("@jbrowse/core
21
21
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
22
22
  defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
23
23
  /**
24
- * #slot configuration.hierarchical.defaultCollapse.categoryNames
24
+ * #slot configuration.hierarchical.defaultCollapsed.categoryNames
25
25
  */
26
26
  categoryNames: {
27
27
  type: string;
28
28
  defaultValue: never[];
29
29
  };
30
30
  /**
31
- * #slot configuration.hierarchical.defaultCollapse.topLevelCategories
31
+ * #slot configuration.hierarchical.defaultCollapsed.topLevelCategories
32
32
  */
33
33
  topLevelCategories: {
34
34
  type: string;
35
35
  defaultValue: boolean;
36
36
  };
37
37
  /**
38
- * #slot configuration.hierarchical.defaultCollapse.subCategories
38
+ * #slot configuration.hierarchical.defaultCollapsed.subCategories
39
39
  */
40
40
  subCategories: {
41
41
  type: string;
package/esm/RootModel/HierarchicalConfig.js CHANGED
@@ -23,21 +23,21 @@ export function HierarchicalConfigSchemaFactory() {
23
23
  }),
24
24
  defaultCollapsed: ConfigurationSchema('defaultCollapsed', {
25
25
  /**
26
- * #slot configuration.hierarchical.defaultCollapse.categoryNames
26
+ * #slot configuration.hierarchical.defaultCollapsed.categoryNames
27
27
  */
28
28
  categoryNames: {
29
29
  type: 'stringArray',
30
30
  defaultValue: [],
31
31
  },
32
32
  /**
33
- * #slot configuration.hierarchical.defaultCollapse.topLevelCategories
33
+ * #slot configuration.hierarchical.defaultCollapsed.topLevelCategories
34
34
  */
35
35
  topLevelCategories: {
36
36
  type: 'boolean',
37
37
  defaultValue: false,
38
38
  },
39
39
  /**
40
- * #slot configuration.hierarchical.defaultCollapse.subCategories
40
+ * #slot configuration.hierarchical.defaultCollapsed.subCategories
41
41
  */
42
42
  subCategories: {
43
43
  type: 'boolean',
package/esm/Session/BaseSession.d.ts CHANGED
@@ -7,7 +7,7 @@ import type { BaseRootModelType } from '../RootModel/BaseRootModel';
7
7
  * base session shared by **all** JBrowse products. Be careful what you include
8
8
  * here, everything will use it.
9
9
  */
10
- export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelType, JB_CONFIG_SCHEMA extends AnyConfigurationSchemaType>(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
10
+ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelType, JB_CONFIG_SCHEMA extends AnyConfigurationSchemaType>(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
11
11
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
12
12
  name: import("mobx-state-tree").ISimpleType<string>;
13
13
  margin: import("mobx-state-tree").IType<number | undefined, number, number>;
@@ -52,6 +52,11 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
52
52
  setSubschema(slotName: string, data: unknown): any;
53
53
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
54
54
  aliases: {
55
+ /**
56
+ * #stateModel BaseSessionModel
57
+ * base session shared by **all** JBrowse products. Be careful what you include
58
+ * here, everything will use it.
59
+ */
55
60
  type: string;
56
61
  defaultValue: never[];
57
62
  description: string;
@@ -66,14 +71,16 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
66
71
  adapter: import("mobx-state-tree").IAnyModelType;
67
72
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
68
73
  cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
69
- adapter: import("mobx-state-tree").IAnyModelType;
70
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
74
+ adapter: import("mobx-state-tree").IAnyModelType; /**
75
+ * #getter
76
+ */
77
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>; /**
78
+ * #getter
79
+ */
71
80
  displayName: {
72
81
  type: string;
73
82
  defaultValue: string;
74
- description: string; /**
75
- * #getter
76
- */
83
+ description: string;
77
84
  };
78
85
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>)[];
79
86
  } & {
package/esm/Session/BaseSession.js CHANGED
@@ -1,17 +1,17 @@
1
- import shortid from 'shortid';
1
+ import { nanoid } from '@jbrowse/core/util/nanoid';
2
2
  import { getParent, isStateTreeNode, types, } from 'mobx-state-tree';
3
3
  /**
4
4
  * #stateModel BaseSessionModel
5
5
  * base session shared by **all** JBrowse products. Be careful what you include
6
6
  * here, everything will use it.
7
7
  */
8
- export function BaseSessionModel(pluginManager) {
8
+ export function BaseSessionModel(_pluginManager) {
9
9
  return types
10
10
  .model({
11
11
  /**
12
12
  * #property
13
13
  */
14
- id: types.optional(types.identifier, shortid()),
14
+ id: types.optional(types.identifier, nanoid()),
15
15
  /**
16
16
  * #property
17
17
  */
package/esm/Session/Connections.d.ts CHANGED
@@ -1,7 +1,6 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
2
  import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
3
  import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
4
- import { BaseConnectionConfigModel } from '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig';
5
4
  /**
6
5
  * #stateModel ConnectionManagementSessionMixin
7
6
  */
@@ -159,7 +158,7 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
159
158
  /**
160
159
  * #action
161
160
  */
162
- addConnectionConf(connectionConf: BaseConnectionConfigModel): any;
161
+ addConnectionConf(connectionConf: AnyConfigurationModel): any;
163
162
  /**
164
163
  * #action
165
164
  */
package/esm/Session/DialogQueue.d.ts CHANGED
@@ -5,7 +5,7 @@ import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
5
5
  /**
6
6
  * #stateModel DialogQueueSessionMixin
7
7
  */
8
- export declare function DialogQueueSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
8
+ export declare function DialogQueueSessionMixin(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
9
9
  queueOfDialogs: [DialogComponentType, unknown][];
10
10
  } & {
11
11
  /**
package/esm/Session/DialogQueue.js CHANGED
@@ -4,7 +4,7 @@ import { isBaseSession } from './BaseSession';
4
4
  /**
5
5
  * #stateModel DialogQueueSessionMixin
6
6
  */
7
- export function DialogQueueSessionMixin(pluginManager) {
7
+ export function DialogQueueSessionMixin(_pluginManager) {
8
8
  return types
9
9
  .model('DialogQueueSessionMixin', {})
10
10
  .volatile(() => ({