@jbrowse/product-core 2.6.3 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +136 -115
  2. package/dist/RootModel/HierarchicalConfig.d.ts +3 -3
  3. package/dist/RootModel/HierarchicalConfig.js +3 -3
  4. package/dist/Session/BaseSession.d.ts +13 -6
  5. package/dist/Session/BaseSession.js +3 -6
  6. package/dist/Session/Connections.d.ts +1 -2
  7. package/dist/Session/DialogQueue.d.ts +1 -1
  8. package/dist/Session/DialogQueue.js +1 -1
  9. package/dist/Session/MultipleViews.d.ts +396 -353
  10. package/dist/Session/ReferenceManagement.d.ts +1 -1
  11. package/dist/Session/ReferenceManagement.js +1 -1
  12. package/dist/Session/SessionTracks.d.ts +389 -351
  13. package/dist/Session/Themes.d.ts +2 -4
  14. package/dist/Session/Themes.js +1 -1
  15. package/dist/Session/Tracks.d.ts +387 -337
  16. package/dist/rpcWorker.js +0 -1
  17. package/esm/RootModel/BaseRootModel.d.ts +136 -115
  18. package/esm/RootModel/HierarchicalConfig.d.ts +3 -3
  19. package/esm/RootModel/HierarchicalConfig.js +3 -3
  20. package/esm/Session/BaseSession.d.ts +13 -6
  21. package/esm/Session/BaseSession.js +3 -3
  22. package/esm/Session/Connections.d.ts +1 -2
  23. package/esm/Session/DialogQueue.d.ts +1 -1
  24. package/esm/Session/DialogQueue.js +1 -1
  25. package/esm/Session/MultipleViews.d.ts +396 -353
  26. package/esm/Session/ReferenceManagement.d.ts +1 -1
  27. package/esm/Session/ReferenceManagement.js +1 -1
  28. package/esm/Session/SessionTracks.d.ts +389 -351
  29. package/esm/Session/Themes.d.ts +2 -4
  30. package/esm/Session/Themes.js +1 -1
  31. package/esm/Session/Tracks.d.ts +387 -337
  32. package/esm/rpcWorker.js +0 -1
  33. package/package.json +7 -7
package/esm/Session/Tracks.d.ts CHANGED
@@ -33,6 +33,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
33
33
  [x: string]: string | undefined;
34
34
  } | undefined;
35
35
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
36
+ } & {
37
+ getConf(arg: string): any;
36
38
  } & {
37
39
  readonly initialized: boolean;
38
40
  readonly name: string;
@@ -45,7 +47,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
45
47
  readonly lowerCaseRefNames: string[] | undefined;
46
48
  readonly allRefNamesWithLowerCase: string[] | undefined;
47
49
  readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
48
- readonly refNameColors: string[];
50
+ readonly refNameColors: string[]; /** Instance of a session that has tracks */
49
51
  } & {
50
52
  readonly refNames: string[] | undefined;
51
53
  } & {
@@ -87,6 +89,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
87
89
  [x: string]: string | undefined;
88
90
  } | undefined;
89
91
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
92
+ } & {
93
+ getConf(arg: string): any;
90
94
  } & {
91
95
  readonly initialized: boolean;
92
96
  readonly name: string;
@@ -99,7 +103,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
99
103
  readonly lowerCaseRefNames: string[] | undefined;
100
104
  readonly allRefNamesWithLowerCase: string[] | undefined;
101
105
  readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
102
- readonly refNameColors: string[];
106
+ readonly refNameColors: string[]; /** Instance of a session that has tracks */
103
107
  } & {
104
108
  readonly refNames: string[] | undefined;
105
109
  } & {
@@ -129,117 +133,119 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
129
133
  }>;
130
134
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
131
135
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
132
- readonly assemblyNameMap: {
133
- [key: string]: ({
134
- configuration: any;
135
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
136
- error: unknown;
137
- loaded: boolean;
138
- loadingP: Promise<void> | undefined;
139
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
140
- refNameAliases: {
141
- [x: string]: string | undefined;
142
- } | undefined;
143
- lowerCaseRefNameAliases: {
144
- [x: string]: string | undefined;
145
- } | undefined;
146
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
147
- } & {
148
- readonly initialized: boolean;
149
- readonly name: string;
150
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
151
- readonly aliases: string[];
152
- readonly displayName: string | undefined;
153
- hasName(name: string): boolean;
154
- readonly allAliases: string[];
155
- readonly allRefNames: string[] | undefined;
156
- readonly lowerCaseRefNames: string[] | undefined;
157
- readonly allRefNamesWithLowerCase: string[] | undefined;
158
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
159
- readonly refNameColors: string[];
160
- } & {
161
- readonly refNames: string[] | undefined;
162
- } & {
163
- getCanonicalRefName(refName: string): string | undefined;
164
- getRefNameColor(refName: string): string | undefined;
165
- isValidRefName(refName: string): boolean;
166
- } & {
167
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
168
- setError(e: unknown): void;
169
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
170
- setRefNameAliases(aliases: {
171
- [x: string]: string | undefined;
172
- }, lcAliases: {
173
- [x: string]: string | undefined;
174
- }): void;
175
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
176
- setLoadingP(p?: Promise<void> | undefined): void;
177
- load(): Promise<void>;
178
- loadPre(): Promise<void>;
179
- } & {
180
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
181
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
182
- [x: string]: string | undefined;
183
- }>;
184
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
185
- [x: string]: string | undefined;
186
- }>;
187
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
188
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
189
- }, {
190
- error: unknown;
191
- loaded: boolean;
192
- loadingP: Promise<void> | undefined;
193
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
194
- refNameAliases: {
195
- [x: string]: string | undefined;
196
- } | undefined;
197
- lowerCaseRefNameAliases: {
198
- [x: string]: string | undefined;
199
- } | undefined;
200
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
201
- } & {
202
- readonly initialized: boolean;
203
- readonly name: string;
204
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
205
- readonly aliases: string[];
206
- readonly displayName: string | undefined;
207
- hasName(name: string): boolean;
208
- readonly allAliases: string[];
209
- readonly allRefNames: string[] | undefined;
210
- readonly lowerCaseRefNames: string[] | undefined;
211
- readonly allRefNamesWithLowerCase: string[] | undefined;
212
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
213
- readonly refNameColors: string[];
214
- } & {
215
- readonly refNames: string[] | undefined;
216
- } & {
217
- getCanonicalRefName(refName: string): string | undefined;
218
- getRefNameColor(refName: string): string | undefined;
219
- isValidRefName(refName: string): boolean;
220
- } & {
221
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
222
- setError(e: unknown): void;
223
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
224
- setRefNameAliases(aliases: {
225
- [x: string]: string | undefined;
226
- }, lcAliases: {
227
- [x: string]: string | undefined;
228
- }): void;
229
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
230
- setLoadingP(p?: Promise<void> | undefined): void;
231
- load(): Promise<void>;
232
- loadPre(): Promise<void>;
233
- } & {
234
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
235
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
236
- [x: string]: string | undefined;
237
- }>;
238
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
239
- [x: string]: string | undefined;
240
- }>;
241
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
242
- };
136
+ readonly assemblyNameMap: Record<string, ({
137
+ configuration: any;
138
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
139
+ error: unknown;
140
+ loaded: boolean;
141
+ loadingP: Promise<void> | undefined;
142
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
143
+ refNameAliases: {
144
+ [x: string]: string | undefined;
145
+ } | undefined;
146
+ lowerCaseRefNameAliases: {
147
+ [x: string]: string | undefined;
148
+ } | undefined;
149
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
150
+ } & {
151
+ getConf(arg: string): any;
152
+ } & {
153
+ readonly initialized: boolean;
154
+ readonly name: string;
155
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
156
+ readonly aliases: string[];
157
+ readonly displayName: string | undefined;
158
+ hasName(name: string): boolean;
159
+ readonly allAliases: string[];
160
+ readonly allRefNames: string[] | undefined;
161
+ readonly lowerCaseRefNames: string[] | undefined;
162
+ readonly allRefNamesWithLowerCase: string[] | undefined;
163
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
164
+ readonly refNameColors: string[];
165
+ } & {
166
+ readonly refNames: string[] | undefined;
167
+ } & {
168
+ getCanonicalRefName(refName: string): string | undefined;
169
+ getRefNameColor(refName: string): string | undefined;
170
+ isValidRefName(refName: string): boolean;
171
+ } & {
172
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
173
+ setError(e: unknown): void;
174
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
175
+ setRefNameAliases(aliases: {
176
+ [x: string]: string | undefined;
177
+ }, lcAliases: {
178
+ [x: string]: string | undefined;
179
+ }): void;
180
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
181
+ setLoadingP(p?: Promise<void> | undefined): void;
182
+ load(): Promise<void>;
183
+ loadPre(): Promise<void>;
184
+ } & {
185
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
186
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
187
+ [x: string]: string | undefined;
188
+ }>;
189
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
190
+ [x: string]: string | undefined;
191
+ }>;
192
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
193
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
194
+ }, {
195
+ error: unknown;
196
+ loaded: boolean;
197
+ loadingP: Promise<void> | undefined;
198
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
199
+ refNameAliases: {
200
+ [x: string]: string | undefined;
201
+ } | undefined;
202
+ lowerCaseRefNameAliases: {
203
+ [x: string]: string | undefined;
204
+ } | undefined;
205
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
206
+ } & {
207
+ getConf(arg: string): any;
208
+ } & {
209
+ readonly initialized: boolean;
210
+ readonly name: string;
211
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
212
+ readonly aliases: string[];
213
+ readonly displayName: string | undefined;
214
+ hasName(name: string): boolean;
215
+ readonly allAliases: string[];
216
+ readonly allRefNames: string[] | undefined;
217
+ readonly lowerCaseRefNames: string[] | undefined;
218
+ readonly allRefNamesWithLowerCase: string[] | undefined;
219
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
220
+ readonly refNameColors: string[];
221
+ } & {
222
+ readonly refNames: string[] | undefined;
223
+ } & {
224
+ getCanonicalRefName(refName: string): string | undefined;
225
+ getRefNameColor(refName: string): string | undefined;
226
+ isValidRefName(refName: string): boolean;
227
+ } & {
228
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
229
+ setError(e: unknown): void;
230
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
231
+ setRefNameAliases(aliases: {
232
+ [x: string]: string | undefined;
233
+ }, lcAliases: {
234
+ [x: string]: string | undefined;
235
+ }): void;
236
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
237
+ setLoadingP(p?: Promise<void> | undefined): void;
238
+ load(): Promise<void>;
239
+ loadPre(): Promise<void>;
240
+ } & {
241
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
242
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
243
+ [x: string]: string | undefined;
244
+ }>;
245
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
246
+ [x: string]: string | undefined;
247
+ }>;
248
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
243
249
  } & {
244
250
  get(asmName: string): ({
245
251
  configuration: any;
@@ -255,6 +261,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
255
261
  [x: string]: string | undefined;
256
262
  } | undefined;
257
263
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
264
+ } & {
265
+ getConf(arg: string): any;
258
266
  } & {
259
267
  readonly initialized: boolean;
260
268
  readonly name: string;
@@ -309,6 +317,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
309
317
  [x: string]: string | undefined;
310
318
  } | undefined;
311
319
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
320
+ } & {
321
+ getConf(arg: string): any;
312
322
  } & {
313
323
  readonly initialized: boolean;
314
324
  readonly name: string;
@@ -372,6 +382,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
372
382
  [x: string]: string | undefined;
373
383
  } | undefined;
374
384
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
385
+ } & {
386
+ getConf(arg: string): any;
375
387
  } & {
376
388
  readonly initialized: boolean;
377
389
  readonly name: string;
@@ -426,6 +438,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
426
438
  [x: string]: string | undefined;
427
439
  } | undefined;
428
440
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
441
+ } & {
442
+ getConf(arg: string): any;
429
443
  } & {
430
444
  readonly initialized: boolean;
431
445
  readonly name: string;
@@ -496,6 +510,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
496
510
  [x: string]: string | undefined;
497
511
  } | undefined;
498
512
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
513
+ } & {
514
+ getConf(arg: string): any;
499
515
  } & {
500
516
  readonly initialized: boolean;
501
517
  readonly name: string;
@@ -550,6 +566,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
550
566
  [x: string]: string | undefined;
551
567
  } | undefined;
552
568
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
569
+ } & {
570
+ getConf(arg: string): any;
553
571
  } & {
554
572
  readonly initialized: boolean;
555
573
  readonly name: string;
@@ -608,6 +626,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
608
626
  [x: string]: string | undefined;
609
627
  } | undefined;
610
628
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
629
+ } & {
630
+ getConf(arg: string): any;
611
631
  } & {
612
632
  readonly initialized: boolean;
613
633
  readonly name: string;
@@ -620,7 +640,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
620
640
  readonly lowerCaseRefNames: string[] | undefined;
621
641
  readonly allRefNamesWithLowerCase: string[] | undefined;
622
642
  readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
623
- readonly refNameColors: string[];
643
+ readonly refNameColors: string[]; /** Instance of a session that has tracks */
624
644
  } & {
625
645
  readonly refNames: string[] | undefined;
626
646
  } & {
@@ -650,117 +670,119 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
650
670
  }>;
651
671
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
652
672
  }, {
653
- readonly assemblyNameMap: {
654
- [key: string]: ({
655
- configuration: any;
656
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
657
- error: unknown;
658
- loaded: boolean;
659
- loadingP: Promise<void> | undefined;
660
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
661
- refNameAliases: {
662
- [x: string]: string | undefined;
663
- } | undefined;
664
- lowerCaseRefNameAliases: {
665
- [x: string]: string | undefined;
666
- } | undefined;
667
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
668
- } & {
669
- readonly initialized: boolean;
670
- readonly name: string;
671
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
672
- readonly aliases: string[];
673
- readonly displayName: string | undefined;
674
- hasName(name: string): boolean;
675
- readonly allAliases: string[];
676
- readonly allRefNames: string[] | undefined;
677
- readonly lowerCaseRefNames: string[] | undefined;
678
- readonly allRefNamesWithLowerCase: string[] | undefined;
679
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
680
- readonly refNameColors: string[];
681
- } & {
682
- readonly refNames: string[] | undefined;
683
- } & {
684
- getCanonicalRefName(refName: string): string | undefined;
685
- getRefNameColor(refName: string): string | undefined;
686
- isValidRefName(refName: string): boolean;
687
- } & {
688
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
689
- setError(e: unknown): void;
690
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
691
- setRefNameAliases(aliases: {
692
- [x: string]: string | undefined;
693
- }, lcAliases: {
694
- [x: string]: string | undefined;
695
- }): void;
696
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
697
- setLoadingP(p?: Promise<void> | undefined): void;
698
- load(): Promise<void>;
699
- loadPre(): Promise<void>;
700
- } & {
701
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
702
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
703
- [x: string]: string | undefined;
704
- }>;
705
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
706
- [x: string]: string | undefined;
707
- }>;
708
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
709
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
710
- }, {
711
- error: unknown;
712
- loaded: boolean;
713
- loadingP: Promise<void> | undefined;
714
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
715
- refNameAliases: {
716
- [x: string]: string | undefined;
717
- } | undefined;
718
- lowerCaseRefNameAliases: {
719
- [x: string]: string | undefined;
720
- } | undefined;
721
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
722
- } & {
723
- readonly initialized: boolean;
724
- readonly name: string;
725
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
726
- readonly aliases: string[];
727
- readonly displayName: string | undefined;
728
- hasName(name: string): boolean;
729
- readonly allAliases: string[];
730
- readonly allRefNames: string[] | undefined;
731
- readonly lowerCaseRefNames: string[] | undefined;
732
- readonly allRefNamesWithLowerCase: string[] | undefined;
733
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
734
- readonly refNameColors: string[];
735
- } & {
736
- readonly refNames: string[] | undefined;
737
- } & {
738
- getCanonicalRefName(refName: string): string | undefined;
739
- getRefNameColor(refName: string): string | undefined;
740
- isValidRefName(refName: string): boolean;
741
- } & {
742
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
743
- setError(e: unknown): void;
744
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
745
- setRefNameAliases(aliases: {
746
- [x: string]: string | undefined;
747
- }, lcAliases: {
748
- [x: string]: string | undefined;
749
- }): void;
750
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
751
- setLoadingP(p?: Promise<void> | undefined): void;
752
- load(): Promise<void>;
753
- loadPre(): Promise<void>;
754
- } & {
755
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
756
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
757
- [x: string]: string | undefined;
758
- }>;
759
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
760
- [x: string]: string | undefined;
761
- }>;
762
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
763
- };
673
+ readonly assemblyNameMap: Record<string, ({
674
+ configuration: any;
675
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
676
+ error: unknown;
677
+ loaded: boolean;
678
+ loadingP: Promise<void> | undefined;
679
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
680
+ refNameAliases: {
681
+ [x: string]: string | undefined;
682
+ } | undefined;
683
+ lowerCaseRefNameAliases: {
684
+ [x: string]: string | undefined;
685
+ } | undefined;
686
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
687
+ } & {
688
+ getConf(arg: string): any;
689
+ } & {
690
+ readonly initialized: boolean;
691
+ readonly name: string;
692
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
693
+ readonly aliases: string[];
694
+ readonly displayName: string | undefined;
695
+ hasName(name: string): boolean;
696
+ readonly allAliases: string[];
697
+ readonly allRefNames: string[] | undefined;
698
+ readonly lowerCaseRefNames: string[] | undefined;
699
+ readonly allRefNamesWithLowerCase: string[] | undefined;
700
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
701
+ readonly refNameColors: string[];
702
+ } & {
703
+ readonly refNames: string[] | undefined;
704
+ } & {
705
+ getCanonicalRefName(refName: string): string | undefined;
706
+ getRefNameColor(refName: string): string | undefined;
707
+ isValidRefName(refName: string): boolean;
708
+ } & {
709
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
710
+ setError(e: unknown): void;
711
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
712
+ setRefNameAliases(aliases: {
713
+ [x: string]: string | undefined;
714
+ }, lcAliases: {
715
+ [x: string]: string | undefined;
716
+ }): void;
717
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
718
+ setLoadingP(p?: Promise<void> | undefined): void;
719
+ load(): Promise<void>;
720
+ loadPre(): Promise<void>;
721
+ } & {
722
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
723
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
724
+ [x: string]: string | undefined;
725
+ }>;
726
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
727
+ [x: string]: string | undefined;
728
+ }>;
729
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
730
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
731
+ }, {
732
+ error: unknown;
733
+ loaded: boolean;
734
+ loadingP: Promise<void> | undefined;
735
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
736
+ refNameAliases: {
737
+ [x: string]: string | undefined;
738
+ } | undefined;
739
+ lowerCaseRefNameAliases: {
740
+ [x: string]: string | undefined;
741
+ } | undefined;
742
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
743
+ } & {
744
+ getConf(arg: string): any;
745
+ } & {
746
+ readonly initialized: boolean;
747
+ readonly name: string;
748
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
749
+ readonly aliases: string[];
750
+ readonly displayName: string | undefined;
751
+ hasName(name: string): boolean;
752
+ readonly allAliases: string[];
753
+ readonly allRefNames: string[] | undefined;
754
+ readonly lowerCaseRefNames: string[] | undefined;
755
+ readonly allRefNamesWithLowerCase: string[] | undefined;
756
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
757
+ readonly refNameColors: string[];
758
+ } & {
759
+ readonly refNames: string[] | undefined;
760
+ } & {
761
+ getCanonicalRefName(refName: string): string | undefined;
762
+ getRefNameColor(refName: string): string | undefined;
763
+ isValidRefName(refName: string): boolean;
764
+ } & {
765
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
766
+ setError(e: unknown): void;
767
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
768
+ setRefNameAliases(aliases: {
769
+ [x: string]: string | undefined;
770
+ }, lcAliases: {
771
+ [x: string]: string | undefined;
772
+ }): void;
773
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
774
+ setLoadingP(p?: Promise<void> | undefined): void;
775
+ load(): Promise<void>;
776
+ loadPre(): Promise<void>;
777
+ } & {
778
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
779
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
780
+ [x: string]: string | undefined;
781
+ }>;
782
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
783
+ [x: string]: string | undefined;
784
+ }>;
785
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
764
786
  } & {
765
787
  get(asmName: string): ({
766
788
  configuration: any;
@@ -776,6 +798,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
776
798
  [x: string]: string | undefined;
777
799
  } | undefined;
778
800
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
801
+ } & {
802
+ getConf(arg: string): any;
779
803
  } & {
780
804
  readonly initialized: boolean;
781
805
  readonly name: string;
@@ -830,6 +854,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
830
854
  [x: string]: string | undefined;
831
855
  } | undefined;
832
856
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
857
+ } & {
858
+ getConf(arg: string): any;
833
859
  } & {
834
860
  readonly initialized: boolean;
835
861
  readonly name: string;
@@ -893,6 +919,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
893
919
  [x: string]: string | undefined;
894
920
  } | undefined;
895
921
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
922
+ } & {
923
+ getConf(arg: string): any;
896
924
  } & {
897
925
  readonly initialized: boolean;
898
926
  readonly name: string;
@@ -947,6 +975,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
947
975
  [x: string]: string | undefined;
948
976
  } | undefined;
949
977
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
978
+ } & {
979
+ getConf(arg: string): any;
950
980
  } & {
951
981
  readonly initialized: boolean;
952
982
  readonly name: string;
@@ -1017,6 +1047,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1017
1047
  [x: string]: string | undefined;
1018
1048
  } | undefined;
1019
1049
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1050
+ } & {
1051
+ getConf(arg: string): any;
1020
1052
  } & {
1021
1053
  readonly initialized: boolean;
1022
1054
  readonly name: string;
@@ -1071,6 +1103,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1071
1103
  [x: string]: string | undefined;
1072
1104
  } | undefined;
1073
1105
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1106
+ } & {
1107
+ getConf(arg: string): any;
1074
1108
  } & {
1075
1109
  readonly initialized: boolean;
1076
1110
  readonly name: string;
@@ -1149,6 +1183,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1149
1183
  [x: string]: string | undefined;
1150
1184
  } | undefined;
1151
1185
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1186
+ } & {
1187
+ getConf(arg: string): any;
1152
1188
  } & {
1153
1189
  readonly initialized: boolean;
1154
1190
  readonly name: string;
@@ -1161,7 +1197,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1161
1197
  readonly lowerCaseRefNames: string[] | undefined;
1162
1198
  readonly allRefNamesWithLowerCase: string[] | undefined;
1163
1199
  readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1164
- readonly refNameColors: string[];
1200
+ readonly refNameColors: string[]; /** Instance of a session that has tracks */
1165
1201
  } & {
1166
1202
  readonly refNames: string[] | undefined;
1167
1203
  } & {
@@ -1191,117 +1227,119 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1191
1227
  }>;
1192
1228
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1193
1229
  }, {
1194
- readonly assemblyNameMap: {
1195
- [key: string]: ({
1196
- configuration: any;
1197
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1198
- error: unknown;
1199
- loaded: boolean;
1200
- loadingP: Promise<void> | undefined;
1201
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1202
- refNameAliases: {
1203
- [x: string]: string | undefined;
1204
- } | undefined;
1205
- lowerCaseRefNameAliases: {
1206
- [x: string]: string | undefined;
1207
- } | undefined;
1208
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1209
- } & {
1210
- readonly initialized: boolean;
1211
- readonly name: string;
1212
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1213
- readonly aliases: string[];
1214
- readonly displayName: string | undefined;
1215
- hasName(name: string): boolean;
1216
- readonly allAliases: string[];
1217
- readonly allRefNames: string[] | undefined;
1218
- readonly lowerCaseRefNames: string[] | undefined;
1219
- readonly allRefNamesWithLowerCase: string[] | undefined;
1220
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1221
- readonly refNameColors: string[];
1222
- } & {
1223
- readonly refNames: string[] | undefined;
1224
- } & {
1225
- getCanonicalRefName(refName: string): string | undefined;
1226
- getRefNameColor(refName: string): string | undefined;
1227
- isValidRefName(refName: string): boolean;
1228
- } & {
1229
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1230
- setError(e: unknown): void;
1231
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1232
- setRefNameAliases(aliases: {
1233
- [x: string]: string | undefined;
1234
- }, lcAliases: {
1235
- [x: string]: string | undefined;
1236
- }): void;
1237
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1238
- setLoadingP(p?: Promise<void> | undefined): void;
1239
- load(): Promise<void>;
1240
- loadPre(): Promise<void>;
1241
- } & {
1242
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1243
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1244
- [x: string]: string | undefined;
1245
- }>;
1246
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1247
- [x: string]: string | undefined;
1248
- }>;
1249
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1250
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1251
- }, {
1252
- error: unknown;
1253
- loaded: boolean;
1254
- loadingP: Promise<void> | undefined;
1255
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1256
- refNameAliases: {
1257
- [x: string]: string | undefined;
1258
- } | undefined;
1259
- lowerCaseRefNameAliases: {
1260
- [x: string]: string | undefined;
1261
- } | undefined;
1262
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1263
- } & {
1264
- readonly initialized: boolean;
1265
- readonly name: string;
1266
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1267
- readonly aliases: string[];
1268
- readonly displayName: string | undefined;
1269
- hasName(name: string): boolean;
1270
- readonly allAliases: string[];
1271
- readonly allRefNames: string[] | undefined;
1272
- readonly lowerCaseRefNames: string[] | undefined;
1273
- readonly allRefNamesWithLowerCase: string[] | undefined;
1274
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1275
- readonly refNameColors: string[];
1276
- } & {
1277
- readonly refNames: string[] | undefined;
1278
- } & {
1279
- getCanonicalRefName(refName: string): string | undefined;
1280
- getRefNameColor(refName: string): string | undefined;
1281
- isValidRefName(refName: string): boolean;
1282
- } & {
1283
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1284
- setError(e: unknown): void;
1285
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1286
- setRefNameAliases(aliases: {
1287
- [x: string]: string | undefined;
1288
- }, lcAliases: {
1289
- [x: string]: string | undefined;
1290
- }): void;
1291
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1292
- setLoadingP(p?: Promise<void> | undefined): void;
1293
- load(): Promise<void>;
1294
- loadPre(): Promise<void>;
1295
- } & {
1296
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1297
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1298
- [x: string]: string | undefined;
1299
- }>;
1300
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1301
- [x: string]: string | undefined;
1302
- }>;
1303
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1304
- };
1230
+ readonly assemblyNameMap: Record<string, ({
1231
+ configuration: any;
1232
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1233
+ error: unknown;
1234
+ loaded: boolean;
1235
+ loadingP: Promise<void> | undefined;
1236
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1237
+ refNameAliases: {
1238
+ [x: string]: string | undefined;
1239
+ } | undefined;
1240
+ lowerCaseRefNameAliases: {
1241
+ [x: string]: string | undefined;
1242
+ } | undefined;
1243
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1244
+ } & {
1245
+ getConf(arg: string): any;
1246
+ } & {
1247
+ readonly initialized: boolean;
1248
+ readonly name: string;
1249
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1250
+ readonly aliases: string[];
1251
+ readonly displayName: string | undefined;
1252
+ hasName(name: string): boolean;
1253
+ readonly allAliases: string[];
1254
+ readonly allRefNames: string[] | undefined;
1255
+ readonly lowerCaseRefNames: string[] | undefined;
1256
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1257
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1258
+ readonly refNameColors: string[];
1259
+ } & {
1260
+ readonly refNames: string[] | undefined;
1261
+ } & {
1262
+ getCanonicalRefName(refName: string): string | undefined;
1263
+ getRefNameColor(refName: string): string | undefined;
1264
+ isValidRefName(refName: string): boolean;
1265
+ } & {
1266
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1267
+ setError(e: unknown): void;
1268
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1269
+ setRefNameAliases(aliases: {
1270
+ [x: string]: string | undefined;
1271
+ }, lcAliases: {
1272
+ [x: string]: string | undefined;
1273
+ }): void;
1274
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1275
+ setLoadingP(p?: Promise<void> | undefined): void;
1276
+ load(): Promise<void>;
1277
+ loadPre(): Promise<void>;
1278
+ } & {
1279
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1280
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1281
+ [x: string]: string | undefined;
1282
+ }>;
1283
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1284
+ [x: string]: string | undefined;
1285
+ }>;
1286
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1287
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1288
+ }, {
1289
+ error: unknown;
1290
+ loaded: boolean;
1291
+ loadingP: Promise<void> | undefined;
1292
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1293
+ refNameAliases: {
1294
+ [x: string]: string | undefined;
1295
+ } | undefined;
1296
+ lowerCaseRefNameAliases: {
1297
+ [x: string]: string | undefined;
1298
+ } | undefined;
1299
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1300
+ } & {
1301
+ getConf(arg: string): any;
1302
+ } & {
1303
+ readonly initialized: boolean;
1304
+ readonly name: string;
1305
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1306
+ readonly aliases: string[];
1307
+ readonly displayName: string | undefined;
1308
+ hasName(name: string): boolean;
1309
+ readonly allAliases: string[];
1310
+ readonly allRefNames: string[] | undefined;
1311
+ readonly lowerCaseRefNames: string[] | undefined;
1312
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1313
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1314
+ readonly refNameColors: string[];
1315
+ } & {
1316
+ readonly refNames: string[] | undefined;
1317
+ } & {
1318
+ getCanonicalRefName(refName: string): string | undefined;
1319
+ getRefNameColor(refName: string): string | undefined;
1320
+ isValidRefName(refName: string): boolean;
1321
+ } & {
1322
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1323
+ setError(e: unknown): void;
1324
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1325
+ setRefNameAliases(aliases: {
1326
+ [x: string]: string | undefined;
1327
+ }, lcAliases: {
1328
+ [x: string]: string | undefined;
1329
+ }): void;
1330
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1331
+ setLoadingP(p?: Promise<void> | undefined): void;
1332
+ load(): Promise<void>;
1333
+ loadPre(): Promise<void>;
1334
+ } & {
1335
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1336
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1337
+ [x: string]: string | undefined;
1338
+ }>;
1339
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1340
+ [x: string]: string | undefined;
1341
+ }>;
1342
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1305
1343
  } & {
1306
1344
  get(asmName: string): ({
1307
1345
  configuration: any;
@@ -1317,6 +1355,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1317
1355
  [x: string]: string | undefined;
1318
1356
  } | undefined;
1319
1357
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1358
+ } & {
1359
+ getConf(arg: string): any;
1320
1360
  } & {
1321
1361
  readonly initialized: boolean;
1322
1362
  readonly name: string;
@@ -1371,6 +1411,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1371
1411
  [x: string]: string | undefined;
1372
1412
  } | undefined;
1373
1413
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1414
+ } & {
1415
+ getConf(arg: string): any;
1374
1416
  } & {
1375
1417
  readonly initialized: boolean;
1376
1418
  readonly name: string;
@@ -1434,6 +1476,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1434
1476
  [x: string]: string | undefined;
1435
1477
  } | undefined;
1436
1478
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1479
+ } & {
1480
+ getConf(arg: string): any;
1437
1481
  } & {
1438
1482
  readonly initialized: boolean;
1439
1483
  readonly name: string;
@@ -1488,6 +1532,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1488
1532
  [x: string]: string | undefined;
1489
1533
  } | undefined;
1490
1534
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1535
+ } & {
1536
+ getConf(arg: string): any;
1491
1537
  } & {
1492
1538
  readonly initialized: boolean;
1493
1539
  readonly name: string;
@@ -1558,6 +1604,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1558
1604
  [x: string]: string | undefined;
1559
1605
  } | undefined;
1560
1606
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1607
+ } & {
1608
+ getConf(arg: string): any;
1561
1609
  } & {
1562
1610
  readonly initialized: boolean;
1563
1611
  readonly name: string;
@@ -1612,6 +1660,8 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1612
1660
  [x: string]: string | undefined;
1613
1661
  } | undefined;
1614
1662
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1663
+ } & {
1664
+ getConf(arg: string): any;
1615
1665
  } & {
1616
1666
  readonly initialized: boolean;
1617
1667
  readonly name: string;