@jbrowse/product-core 2.6.3 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +136 -115
  2. package/dist/RootModel/HierarchicalConfig.d.ts +3 -3
  3. package/dist/RootModel/HierarchicalConfig.js +3 -3
  4. package/dist/Session/BaseSession.d.ts +13 -6
  5. package/dist/Session/BaseSession.js +3 -6
  6. package/dist/Session/Connections.d.ts +1 -2
  7. package/dist/Session/DialogQueue.d.ts +1 -1
  8. package/dist/Session/DialogQueue.js +1 -1
  9. package/dist/Session/MultipleViews.d.ts +396 -353
  10. package/dist/Session/ReferenceManagement.d.ts +1 -1
  11. package/dist/Session/ReferenceManagement.js +1 -1
  12. package/dist/Session/SessionTracks.d.ts +389 -351
  13. package/dist/Session/Themes.d.ts +2 -4
  14. package/dist/Session/Themes.js +1 -1
  15. package/dist/Session/Tracks.d.ts +387 -337
  16. package/dist/rpcWorker.js +0 -1
  17. package/esm/RootModel/BaseRootModel.d.ts +136 -115
  18. package/esm/RootModel/HierarchicalConfig.d.ts +3 -3
  19. package/esm/RootModel/HierarchicalConfig.js +3 -3
  20. package/esm/Session/BaseSession.d.ts +13 -6
  21. package/esm/Session/BaseSession.js +3 -3
  22. package/esm/Session/Connections.d.ts +1 -2
  23. package/esm/Session/DialogQueue.d.ts +1 -1
  24. package/esm/Session/DialogQueue.js +1 -1
  25. package/esm/Session/MultipleViews.d.ts +396 -353
  26. package/esm/Session/ReferenceManagement.d.ts +1 -1
  27. package/esm/Session/ReferenceManagement.js +1 -1
  28. package/esm/Session/SessionTracks.d.ts +389 -351
  29. package/esm/Session/Themes.d.ts +2 -4
  30. package/esm/Session/Themes.js +1 -1
  31. package/esm/Session/Tracks.d.ts +387 -337
  32. package/esm/rpcWorker.js +0 -1
  33. package/package.json +7 -7
package/esm/Session/SessionTracks.d.ts CHANGED
@@ -35,6 +35,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -89,6 +91,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -131,117 +135,119 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  }>;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- readonly assemblyNameMap: {
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- [key: string]: ({
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- configuration: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly initialized: boolean;
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- readonly name: string;
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- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- readonly aliases: string[];
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- readonly displayName: string | undefined;
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- hasName(name: string): boolean;
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- readonly allAliases: string[];
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- readonly allRefNames: string[] | undefined;
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- readonly lowerCaseRefNames: string[] | undefined;
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- readonly allRefNamesWithLowerCase: string[] | undefined;
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- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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- readonly refNameColors: string[];
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- } & {
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- readonly refNames: string[] | undefined;
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- } & {
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- getCanonicalRefName(refName: string): string | undefined;
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- getRefNameColor(refName: string): string | undefined;
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- isValidRefName(refName: string): boolean;
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- } & {
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- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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- setError(e: unknown): void;
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- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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- setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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- }): void;
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- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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- setLoadingP(p?: Promise<void> | undefined): void;
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- load(): Promise<void>;
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- loadPre(): Promise<void>;
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- } & {
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- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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- }>;
186
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
187
- [x: string]: string | undefined;
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- }>;
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- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
191
- }, {
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- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
201
- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly initialized: boolean;
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- readonly name: string;
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- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- readonly aliases: string[];
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- readonly displayName: string | undefined;
209
- hasName(name: string): boolean;
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- readonly allAliases: string[];
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- readonly allRefNames: string[] | undefined;
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- readonly lowerCaseRefNames: string[] | undefined;
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- readonly allRefNamesWithLowerCase: string[] | undefined;
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- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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- readonly refNameColors: string[];
216
- } & {
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- readonly refNames: string[] | undefined;
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- } & {
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- getCanonicalRefName(refName: string): string | undefined;
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- getRefNameColor(refName: string): string | undefined;
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- isValidRefName(refName: string): boolean;
222
- } & {
223
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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- setError(e: unknown): void;
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- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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- setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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- }): void;
231
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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- setLoadingP(p?: Promise<void> | undefined): void;
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- load(): Promise<void>;
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- loadPre(): Promise<void>;
235
- } & {
236
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
237
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
239
- }>;
240
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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- }>;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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- };
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+ readonly assemblyNameMap: Record<string, ({
139
+ configuration: any;
140
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
141
+ error: unknown;
142
+ loaded: boolean;
143
+ loadingP: Promise<void> | undefined;
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+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
145
+ refNameAliases: {
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+ [x: string]: string | undefined;
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+ } | undefined;
148
+ lowerCaseRefNameAliases: {
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+ [x: string]: string | undefined;
150
+ } | undefined;
151
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
152
+ } & {
153
+ getConf(arg: string): any;
154
+ } & {
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+ readonly initialized: boolean;
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+ readonly name: string;
157
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
158
+ readonly aliases: string[];
159
+ readonly displayName: string | undefined;
160
+ hasName(name: string): boolean;
161
+ readonly allAliases: string[];
162
+ readonly allRefNames: string[] | undefined;
163
+ readonly lowerCaseRefNames: string[] | undefined;
164
+ readonly allRefNamesWithLowerCase: string[] | undefined;
165
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
166
+ readonly refNameColors: string[];
167
+ } & {
168
+ readonly refNames: string[] | undefined;
169
+ } & {
170
+ getCanonicalRefName(refName: string): string | undefined;
171
+ getRefNameColor(refName: string): string | undefined;
172
+ isValidRefName(refName: string): boolean;
173
+ } & {
174
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
175
+ setError(e: unknown): void;
176
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
177
+ setRefNameAliases(aliases: {
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+ [x: string]: string | undefined;
179
+ }, lcAliases: {
180
+ [x: string]: string | undefined;
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+ }): void;
182
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
183
+ setLoadingP(p?: Promise<void> | undefined): void;
184
+ load(): Promise<void>;
185
+ loadPre(): Promise<void>;
186
+ } & {
187
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
189
+ [x: string]: string | undefined;
190
+ }>;
191
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
193
+ }>;
194
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
196
+ }, {
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+ error: unknown;
198
+ loaded: boolean;
199
+ loadingP: Promise<void> | undefined;
200
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
201
+ refNameAliases: {
202
+ [x: string]: string | undefined;
203
+ } | undefined;
204
+ lowerCaseRefNameAliases: {
205
+ [x: string]: string | undefined;
206
+ } | undefined;
207
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
208
+ } & {
209
+ getConf(arg: string): any;
210
+ } & {
211
+ readonly initialized: boolean;
212
+ readonly name: string;
213
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
214
+ readonly aliases: string[];
215
+ readonly displayName: string | undefined;
216
+ hasName(name: string): boolean;
217
+ readonly allAliases: string[];
218
+ readonly allRefNames: string[] | undefined;
219
+ readonly lowerCaseRefNames: string[] | undefined;
220
+ readonly allRefNamesWithLowerCase: string[] | undefined;
221
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
222
+ readonly refNameColors: string[];
223
+ } & {
224
+ readonly refNames: string[] | undefined;
225
+ } & {
226
+ getCanonicalRefName(refName: string): string | undefined;
227
+ getRefNameColor(refName: string): string | undefined;
228
+ isValidRefName(refName: string): boolean;
229
+ } & {
230
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
231
+ setError(e: unknown): void;
232
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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+ setRefNameAliases(aliases: {
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+ [x: string]: string | undefined;
235
+ }, lcAliases: {
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+ [x: string]: string | undefined;
237
+ }): void;
238
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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+ setLoadingP(p?: Promise<void> | undefined): void;
240
+ load(): Promise<void>;
241
+ loadPre(): Promise<void>;
242
+ } & {
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+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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+ [x: string]: string | undefined;
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+ }>;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
245
251
  } & {
246
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  get(asmName: string): ({
247
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  configuration: any;
@@ -257,6 +263,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
258
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
266
+ } & {
267
+ getConf(arg: string): any;
260
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  } & {
261
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  readonly initialized: boolean;
262
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  readonly name: string;
@@ -311,6 +319,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
314
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -374,6 +384,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
375
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  } | undefined;
376
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
387
+ } & {
388
+ getConf(arg: string): any;
377
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  } & {
378
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  readonly initialized: boolean;
379
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  readonly name: string;
@@ -428,6 +440,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
428
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  [x: string]: string | undefined;
429
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  } | undefined;
430
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
443
+ } & {
444
+ getConf(arg: string): any;
431
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  } & {
432
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  readonly initialized: boolean;
433
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  readonly name: string;
@@ -500,15 +514,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  [x: string]: string | undefined;
501
515
  } | undefined;
502
516
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
517
+ } & {
518
+ getConf(arg: string): any;
503
519
  } & {
504
520
  readonly initialized: boolean;
505
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  readonly name: string;
506
522
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
507
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  readonly aliases: string[];
508
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  readonly displayName: string | undefined;
509
- hasName(name: string): boolean; /**
510
- * #action
511
- */
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+ hasName(name: string): boolean;
512
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  readonly allAliases: string[];
513
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  readonly allRefNames: string[] | undefined;
514
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  readonly lowerCaseRefNames: string[] | undefined;
@@ -558,15 +572,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
558
572
  [x: string]: string | undefined;
559
573
  } | undefined;
560
574
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
575
+ } & {
576
+ getConf(arg: string): any;
561
577
  } & {
562
578
  readonly initialized: boolean;
563
579
  readonly name: string;
564
580
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
565
581
  readonly aliases: string[];
566
582
  readonly displayName: string | undefined;
567
- hasName(name: string): boolean; /**
568
- * #action
569
- */
583
+ hasName(name: string): boolean;
570
584
  readonly allAliases: string[];
571
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  readonly allRefNames: string[] | undefined;
572
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  readonly lowerCaseRefNames: string[] | undefined;
@@ -621,6 +635,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
621
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  [x: string]: string | undefined;
622
636
  } | undefined;
623
637
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
638
+ } & {
639
+ getConf(arg: string): any;
624
640
  } & {
625
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  readonly initialized: boolean;
626
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  readonly name: string;
@@ -663,117 +679,119 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
663
679
  }>;
664
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
665
681
  }, {
666
- readonly assemblyNameMap: {
667
- [key: string]: ({
668
- configuration: any;
669
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
670
- error: unknown;
671
- loaded: boolean;
672
- loadingP: Promise<void> | undefined;
673
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
674
- refNameAliases: {
675
- [x: string]: string | undefined;
676
- } | undefined;
677
- lowerCaseRefNameAliases: {
678
- [x: string]: string | undefined;
679
- } | undefined;
680
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
681
- } & {
682
- readonly initialized: boolean;
683
- readonly name: string;
684
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
685
- readonly aliases: string[];
686
- readonly displayName: string | undefined;
687
- hasName(name: string): boolean;
688
- readonly allAliases: string[];
689
- readonly allRefNames: string[] | undefined;
690
- readonly lowerCaseRefNames: string[] | undefined;
691
- readonly allRefNamesWithLowerCase: string[] | undefined;
692
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
693
- readonly refNameColors: string[];
694
- } & {
695
- readonly refNames: string[] | undefined;
696
- } & {
697
- getCanonicalRefName(refName: string): string | undefined;
698
- getRefNameColor(refName: string): string | undefined;
699
- isValidRefName(refName: string): boolean;
700
- } & {
701
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
702
- setError(e: unknown): void;
703
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
704
- setRefNameAliases(aliases: {
705
- [x: string]: string | undefined;
706
- }, lcAliases: {
707
- [x: string]: string | undefined;
708
- }): void;
709
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
710
- setLoadingP(p?: Promise<void> | undefined): void;
711
- load(): Promise<void>;
712
- loadPre(): Promise<void>;
713
- } & {
714
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
715
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
716
- [x: string]: string | undefined;
717
- }>;
718
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
719
- [x: string]: string | undefined;
720
- }>;
721
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
722
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
723
- }, {
724
- error: unknown;
725
- loaded: boolean;
726
- loadingP: Promise<void> | undefined;
727
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
728
- refNameAliases: {
729
- [x: string]: string | undefined;
730
- } | undefined;
731
- lowerCaseRefNameAliases: {
732
- [x: string]: string | undefined;
733
- } | undefined;
734
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
735
- } & {
736
- readonly initialized: boolean;
737
- readonly name: string;
738
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
739
- readonly aliases: string[];
740
- readonly displayName: string | undefined;
741
- hasName(name: string): boolean;
742
- readonly allAliases: string[];
743
- readonly allRefNames: string[] | undefined;
744
- readonly lowerCaseRefNames: string[] | undefined;
745
- readonly allRefNamesWithLowerCase: string[] | undefined;
746
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
747
- readonly refNameColors: string[];
748
- } & {
749
- readonly refNames: string[] | undefined;
750
- } & {
751
- getCanonicalRefName(refName: string): string | undefined;
752
- getRefNameColor(refName: string): string | undefined;
753
- isValidRefName(refName: string): boolean;
754
- } & {
755
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
756
- setError(e: unknown): void;
757
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
758
- setRefNameAliases(aliases: {
759
- [x: string]: string | undefined;
760
- }, lcAliases: {
761
- [x: string]: string | undefined;
762
- }): void;
763
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
764
- setLoadingP(p?: Promise<void> | undefined): void;
765
- load(): Promise<void>;
766
- loadPre(): Promise<void>;
767
- } & {
768
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
769
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
770
- [x: string]: string | undefined;
771
- }>;
772
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
773
- [x: string]: string | undefined;
774
- }>;
775
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
776
- };
682
+ readonly assemblyNameMap: Record<string, ({
683
+ configuration: any;
684
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
685
+ error: unknown;
686
+ loaded: boolean;
687
+ loadingP: Promise<void> | undefined;
688
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
689
+ refNameAliases: {
690
+ [x: string]: string | undefined;
691
+ } | undefined;
692
+ lowerCaseRefNameAliases: {
693
+ [x: string]: string | undefined;
694
+ } | undefined;
695
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
696
+ } & {
697
+ getConf(arg: string): any;
698
+ } & {
699
+ readonly initialized: boolean;
700
+ readonly name: string;
701
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
702
+ readonly aliases: string[];
703
+ readonly displayName: string | undefined;
704
+ hasName(name: string): boolean;
705
+ readonly allAliases: string[];
706
+ readonly allRefNames: string[] | undefined;
707
+ readonly lowerCaseRefNames: string[] | undefined;
708
+ readonly allRefNamesWithLowerCase: string[] | undefined;
709
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
710
+ readonly refNameColors: string[];
711
+ } & {
712
+ readonly refNames: string[] | undefined;
713
+ } & {
714
+ getCanonicalRefName(refName: string): string | undefined;
715
+ getRefNameColor(refName: string): string | undefined;
716
+ isValidRefName(refName: string): boolean;
717
+ } & {
718
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
719
+ setError(e: unknown): void;
720
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
721
+ setRefNameAliases(aliases: {
722
+ [x: string]: string | undefined;
723
+ }, lcAliases: {
724
+ [x: string]: string | undefined;
725
+ }): void;
726
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
727
+ setLoadingP(p?: Promise<void> | undefined): void;
728
+ load(): Promise<void>;
729
+ loadPre(): Promise<void>;
730
+ } & {
731
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
732
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
733
+ [x: string]: string | undefined;
734
+ }>;
735
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
736
+ [x: string]: string | undefined;
737
+ }>;
738
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
739
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
740
+ }, {
741
+ error: unknown;
742
+ loaded: boolean;
743
+ loadingP: Promise<void> | undefined;
744
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
745
+ refNameAliases: {
746
+ [x: string]: string | undefined;
747
+ } | undefined;
748
+ lowerCaseRefNameAliases: {
749
+ [x: string]: string | undefined;
750
+ } | undefined;
751
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
752
+ } & {
753
+ getConf(arg: string): any;
754
+ } & {
755
+ readonly initialized: boolean;
756
+ readonly name: string;
757
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
758
+ readonly aliases: string[];
759
+ readonly displayName: string | undefined;
760
+ hasName(name: string): boolean;
761
+ readonly allAliases: string[];
762
+ readonly allRefNames: string[] | undefined;
763
+ readonly lowerCaseRefNames: string[] | undefined;
764
+ readonly allRefNamesWithLowerCase: string[] | undefined;
765
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
766
+ readonly refNameColors: string[];
767
+ } & {
768
+ readonly refNames: string[] | undefined;
769
+ } & {
770
+ getCanonicalRefName(refName: string): string | undefined;
771
+ getRefNameColor(refName: string): string | undefined;
772
+ isValidRefName(refName: string): boolean;
773
+ } & {
774
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
775
+ setError(e: unknown): void;
776
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
777
+ setRefNameAliases(aliases: {
778
+ [x: string]: string | undefined;
779
+ }, lcAliases: {
780
+ [x: string]: string | undefined;
781
+ }): void;
782
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
783
+ setLoadingP(p?: Promise<void> | undefined): void;
784
+ load(): Promise<void>;
785
+ loadPre(): Promise<void>;
786
+ } & {
787
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
788
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
789
+ [x: string]: string | undefined;
790
+ }>;
791
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
792
+ [x: string]: string | undefined;
793
+ }>;
794
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
777
795
  } & {
778
796
  get(asmName: string): ({
779
797
  configuration: any;
@@ -789,6 +807,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
789
807
  [x: string]: string | undefined;
790
808
  } | undefined;
791
809
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
810
+ } & {
811
+ getConf(arg: string): any;
792
812
  } & {
793
813
  readonly initialized: boolean;
794
814
  readonly name: string;
@@ -843,6 +863,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
843
863
  [x: string]: string | undefined;
844
864
  } | undefined;
845
865
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
866
+ } & {
867
+ getConf(arg: string): any;
846
868
  } & {
847
869
  readonly initialized: boolean;
848
870
  readonly name: string;
@@ -906,6 +928,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
906
928
  [x: string]: string | undefined;
907
929
  } | undefined;
908
930
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
931
+ } & {
932
+ getConf(arg: string): any;
909
933
  } & {
910
934
  readonly initialized: boolean;
911
935
  readonly name: string;
@@ -960,6 +984,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
960
984
  [x: string]: string | undefined;
961
985
  } | undefined;
962
986
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
987
+ } & {
988
+ getConf(arg: string): any;
963
989
  } & {
964
990
  readonly initialized: boolean;
965
991
  readonly name: string;
@@ -1032,15 +1058,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1032
1058
  [x: string]: string | undefined;
1033
1059
  } | undefined;
1034
1060
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1061
+ } & {
1062
+ getConf(arg: string): any;
1035
1063
  } & {
1036
1064
  readonly initialized: boolean;
1037
1065
  readonly name: string;
1038
1066
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1039
1067
  readonly aliases: string[];
1040
1068
  readonly displayName: string | undefined;
1041
- hasName(name: string): boolean; /**
1042
- * #action
1043
- */
1069
+ hasName(name: string): boolean;
1044
1070
  readonly allAliases: string[];
1045
1071
  readonly allRefNames: string[] | undefined;
1046
1072
  readonly lowerCaseRefNames: string[] | undefined;
@@ -1090,15 +1116,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1090
1116
  [x: string]: string | undefined;
1091
1117
  } | undefined;
1092
1118
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1119
+ } & {
1120
+ getConf(arg: string): any;
1093
1121
  } & {
1094
1122
  readonly initialized: boolean;
1095
1123
  readonly name: string;
1096
1124
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1097
1125
  readonly aliases: string[];
1098
1126
  readonly displayName: string | undefined;
1099
- hasName(name: string): boolean; /**
1100
- * #action
1101
- */
1127
+ hasName(name: string): boolean;
1102
1128
  readonly allAliases: string[];
1103
1129
  readonly allRefNames: string[] | undefined;
1104
1130
  readonly lowerCaseRefNames: string[] | undefined;
@@ -1172,6 +1198,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1172
1198
  [x: string]: string | undefined;
1173
1199
  } | undefined;
1174
1200
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1201
+ } & {
1202
+ getConf(arg: string): any;
1175
1203
  } & {
1176
1204
  readonly initialized: boolean;
1177
1205
  readonly name: string;
@@ -1214,117 +1242,119 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1214
1242
  }>;
1215
1243
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1216
1244
  }, {
1217
- readonly assemblyNameMap: {
1218
- [key: string]: ({
1219
- configuration: any;
1220
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1221
- error: unknown;
1222
- loaded: boolean;
1223
- loadingP: Promise<void> | undefined;
1224
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1225
- refNameAliases: {
1226
- [x: string]: string | undefined;
1227
- } | undefined;
1228
- lowerCaseRefNameAliases: {
1229
- [x: string]: string | undefined;
1230
- } | undefined;
1231
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1232
- } & {
1233
- readonly initialized: boolean;
1234
- readonly name: string;
1235
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1236
- readonly aliases: string[];
1237
- readonly displayName: string | undefined;
1238
- hasName(name: string): boolean;
1239
- readonly allAliases: string[];
1240
- readonly allRefNames: string[] | undefined;
1241
- readonly lowerCaseRefNames: string[] | undefined;
1242
- readonly allRefNamesWithLowerCase: string[] | undefined;
1243
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1244
- readonly refNameColors: string[];
1245
- } & {
1246
- readonly refNames: string[] | undefined;
1247
- } & {
1248
- getCanonicalRefName(refName: string): string | undefined;
1249
- getRefNameColor(refName: string): string | undefined;
1250
- isValidRefName(refName: string): boolean;
1251
- } & {
1252
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1253
- setError(e: unknown): void;
1254
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1255
- setRefNameAliases(aliases: {
1256
- [x: string]: string | undefined;
1257
- }, lcAliases: {
1258
- [x: string]: string | undefined;
1259
- }): void;
1260
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1261
- setLoadingP(p?: Promise<void> | undefined): void;
1262
- load(): Promise<void>;
1263
- loadPre(): Promise<void>;
1264
- } & {
1265
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1266
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1267
- [x: string]: string | undefined;
1268
- }>;
1269
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1270
- [x: string]: string | undefined;
1271
- }>;
1272
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1273
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1274
- }, {
1275
- error: unknown;
1276
- loaded: boolean;
1277
- loadingP: Promise<void> | undefined;
1278
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1279
- refNameAliases: {
1280
- [x: string]: string | undefined;
1281
- } | undefined;
1282
- lowerCaseRefNameAliases: {
1283
- [x: string]: string | undefined;
1284
- } | undefined;
1285
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1286
- } & {
1287
- readonly initialized: boolean;
1288
- readonly name: string;
1289
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1290
- readonly aliases: string[];
1291
- readonly displayName: string | undefined;
1292
- hasName(name: string): boolean;
1293
- readonly allAliases: string[];
1294
- readonly allRefNames: string[] | undefined;
1295
- readonly lowerCaseRefNames: string[] | undefined;
1296
- readonly allRefNamesWithLowerCase: string[] | undefined;
1297
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1298
- readonly refNameColors: string[];
1299
- } & {
1300
- readonly refNames: string[] | undefined;
1301
- } & {
1302
- getCanonicalRefName(refName: string): string | undefined;
1303
- getRefNameColor(refName: string): string | undefined;
1304
- isValidRefName(refName: string): boolean;
1305
- } & {
1306
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1307
- setError(e: unknown): void;
1308
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1309
- setRefNameAliases(aliases: {
1310
- [x: string]: string | undefined;
1311
- }, lcAliases: {
1312
- [x: string]: string | undefined;
1313
- }): void;
1314
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1315
- setLoadingP(p?: Promise<void> | undefined): void;
1316
- load(): Promise<void>;
1317
- loadPre(): Promise<void>;
1318
- } & {
1319
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1320
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1321
- [x: string]: string | undefined;
1322
- }>;
1323
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1324
- [x: string]: string | undefined;
1325
- }>;
1326
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1327
- };
1245
+ readonly assemblyNameMap: Record<string, ({
1246
+ configuration: any;
1247
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1248
+ error: unknown;
1249
+ loaded: boolean;
1250
+ loadingP: Promise<void> | undefined;
1251
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1252
+ refNameAliases: {
1253
+ [x: string]: string | undefined;
1254
+ } | undefined;
1255
+ lowerCaseRefNameAliases: {
1256
+ [x: string]: string | undefined;
1257
+ } | undefined;
1258
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1259
+ } & {
1260
+ getConf(arg: string): any;
1261
+ } & {
1262
+ readonly initialized: boolean;
1263
+ readonly name: string;
1264
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1265
+ readonly aliases: string[];
1266
+ readonly displayName: string | undefined;
1267
+ hasName(name: string): boolean;
1268
+ readonly allAliases: string[];
1269
+ readonly allRefNames: string[] | undefined;
1270
+ readonly lowerCaseRefNames: string[] | undefined;
1271
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1272
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1273
+ readonly refNameColors: string[];
1274
+ } & {
1275
+ readonly refNames: string[] | undefined;
1276
+ } & {
1277
+ getCanonicalRefName(refName: string): string | undefined;
1278
+ getRefNameColor(refName: string): string | undefined;
1279
+ isValidRefName(refName: string): boolean;
1280
+ } & {
1281
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1282
+ setError(e: unknown): void;
1283
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1284
+ setRefNameAliases(aliases: {
1285
+ [x: string]: string | undefined;
1286
+ }, lcAliases: {
1287
+ [x: string]: string | undefined;
1288
+ }): void;
1289
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1290
+ setLoadingP(p?: Promise<void> | undefined): void;
1291
+ load(): Promise<void>;
1292
+ loadPre(): Promise<void>;
1293
+ } & {
1294
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1295
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1296
+ [x: string]: string | undefined;
1297
+ }>;
1298
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1299
+ [x: string]: string | undefined;
1300
+ }>;
1301
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1302
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1303
+ }, {
1304
+ error: unknown;
1305
+ loaded: boolean;
1306
+ loadingP: Promise<void> | undefined;
1307
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1308
+ refNameAliases: {
1309
+ [x: string]: string | undefined;
1310
+ } | undefined;
1311
+ lowerCaseRefNameAliases: {
1312
+ [x: string]: string | undefined;
1313
+ } | undefined;
1314
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1315
+ } & {
1316
+ getConf(arg: string): any;
1317
+ } & {
1318
+ readonly initialized: boolean;
1319
+ readonly name: string;
1320
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1321
+ readonly aliases: string[];
1322
+ readonly displayName: string | undefined;
1323
+ hasName(name: string): boolean;
1324
+ readonly allAliases: string[];
1325
+ readonly allRefNames: string[] | undefined;
1326
+ readonly lowerCaseRefNames: string[] | undefined;
1327
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1328
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1329
+ readonly refNameColors: string[];
1330
+ } & {
1331
+ readonly refNames: string[] | undefined;
1332
+ } & {
1333
+ getCanonicalRefName(refName: string): string | undefined;
1334
+ getRefNameColor(refName: string): string | undefined;
1335
+ isValidRefName(refName: string): boolean;
1336
+ } & {
1337
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1338
+ setError(e: unknown): void;
1339
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1340
+ setRefNameAliases(aliases: {
1341
+ [x: string]: string | undefined;
1342
+ }, lcAliases: {
1343
+ [x: string]: string | undefined;
1344
+ }): void;
1345
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1346
+ setLoadingP(p?: Promise<void> | undefined): void;
1347
+ load(): Promise<void>;
1348
+ loadPre(): Promise<void>;
1349
+ } & {
1350
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1351
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1352
+ [x: string]: string | undefined;
1353
+ }>;
1354
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1355
+ [x: string]: string | undefined;
1356
+ }>;
1357
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1328
1358
  } & {
1329
1359
  get(asmName: string): ({
1330
1360
  configuration: any;
@@ -1340,6 +1370,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1340
1370
  [x: string]: string | undefined;
1341
1371
  } | undefined;
1342
1372
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1373
+ } & {
1374
+ getConf(arg: string): any;
1343
1375
  } & {
1344
1376
  readonly initialized: boolean;
1345
1377
  readonly name: string;
@@ -1394,6 +1426,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1394
1426
  [x: string]: string | undefined;
1395
1427
  } | undefined;
1396
1428
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1429
+ } & {
1430
+ getConf(arg: string): any;
1397
1431
  } & {
1398
1432
  readonly initialized: boolean;
1399
1433
  readonly name: string;
@@ -1457,6 +1491,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1457
1491
  [x: string]: string | undefined;
1458
1492
  } | undefined;
1459
1493
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1494
+ } & {
1495
+ getConf(arg: string): any;
1460
1496
  } & {
1461
1497
  readonly initialized: boolean;
1462
1498
  readonly name: string;
@@ -1511,6 +1547,8 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1511
1547
  [x: string]: string | undefined;
1512
1548
  } | undefined;
1513
1549
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1550
+ } & {
1551
+ getConf(arg: string): any;
1514
1552
  } & {
1515
1553
  readonly initialized: boolean;
1516
1554
  readonly name: string;
@@ -1583,15 +1621,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1583
1621
  [x: string]: string | undefined;
1584
1622
  } | undefined;
1585
1623
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1624
+ } & {
1625
+ getConf(arg: string): any;
1586
1626
  } & {
1587
1627
  readonly initialized: boolean;
1588
1628
  readonly name: string;
1589
1629
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1590
1630
  readonly aliases: string[];
1591
1631
  readonly displayName: string | undefined;
1592
- hasName(name: string): boolean; /**
1593
- * #action
1594
- */
1632
+ hasName(name: string): boolean;
1595
1633
  readonly allAliases: string[];
1596
1634
  readonly allRefNames: string[] | undefined;
1597
1635
  readonly lowerCaseRefNames: string[] | undefined;
@@ -1641,15 +1679,15 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1641
1679
  [x: string]: string | undefined;
1642
1680
  } | undefined;
1643
1681
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1682
+ } & {
1683
+ getConf(arg: string): any;
1644
1684
  } & {
1645
1685
  readonly initialized: boolean;
1646
1686
  readonly name: string;
1647
1687
  readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1648
1688
  readonly aliases: string[];
1649
1689
  readonly displayName: string | undefined;
1650
- hasName(name: string): boolean; /**
1651
- * #action
1652
- */
1690
+ hasName(name: string): boolean;
1653
1691
  readonly allAliases: string[];
1654
1692
  readonly allRefNames: string[] | undefined;
1655
1693
  readonly lowerCaseRefNames: string[] | undefined;