@jbrowse/product-core 2.15.0 → 2.15.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +63 -35
  2. package/dist/Session/MultipleViews.d.ts +204 -112
  3. package/dist/Session/SessionTracks.d.ts +198 -110
  4. package/dist/Session/Tracks.d.ts +198 -110
  5. package/dist/ui/RefNameInfoDialog.js +9 -7
  6. package/esm/RootModel/BaseRootModel.d.ts +63 -35
  7. package/esm/Session/MultipleViews.d.ts +204 -112
  8. package/esm/Session/SessionTracks.d.ts +198 -110
  9. package/esm/Session/Tracks.d.ts +198 -110
  10. package/esm/ui/RefNameInfoDialog.js +11 -9
  11. package/package.json +3 -3
package/esm/Session/MultipleViews.d.ts CHANGED
@@ -44,17 +44,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
44
44
  refNameAliases: {
45
45
  [x: string]: string;
46
46
  } | undefined;
47
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
48
- } & {
49
- readonly lowerCaseRefNameAliases: {
50
- [k: string]: string;
47
+ lowerCaseRefNameAliases: {
48
+ [x: string]: string;
51
49
  } | undefined;
50
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
52
51
  } & {
53
52
  getConf(arg: string): any;
54
53
  } & {
55
54
  readonly initialized: boolean;
56
55
  readonly name: string;
57
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
56
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly" /**
57
+ * #action
58
+ */).BasicRegion[] | undefined;
58
59
  readonly aliases: string[];
59
60
  readonly displayName: string | undefined;
60
61
  hasName(name: string): boolean;
@@ -71,17 +72,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
71
72
  getRefNameColor(refName: string): string | undefined;
72
73
  isValidRefName(refName: string): boolean;
73
74
  } & {
74
- setLoaded({ regions, refNameAliases, cytobands, }: {
75
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
75
76
  regions: import("@jbrowse/core/util").Region[];
76
77
  refNameAliases: {
77
78
  [x: string]: string;
78
79
  };
80
+ lowerCaseRefNameAliases: {
81
+ [x: string]: string;
82
+ };
79
83
  cytobands: import("@jbrowse/core/util").Feature[];
80
84
  }): void;
81
85
  setError(e: unknown): void;
82
86
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
83
87
  setRefNameAliases(aliases: {
84
88
  [x: string]: string;
89
+ }, lowerCaseAliases: {
90
+ [x: string]: string;
85
91
  }): void;
86
92
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
87
93
  setLoadingP(p?: Promise<void>): void;
@@ -110,11 +116,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
110
116
  refNameAliases: {
111
117
  [x: string]: string;
112
118
  } | undefined;
113
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
114
- } & {
115
- readonly lowerCaseRefNameAliases: {
116
- [k: string]: string;
119
+ lowerCaseRefNameAliases: {
120
+ [x: string]: string;
117
121
  } | undefined;
122
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
118
123
  } & {
119
124
  getConf(arg: string): any;
120
125
  } & {
@@ -137,17 +142,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
137
142
  getRefNameColor(refName: string): string | undefined;
138
143
  isValidRefName(refName: string): boolean;
139
144
  } & {
140
- setLoaded({ regions, refNameAliases, cytobands, }: {
145
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
141
146
  regions: import("@jbrowse/core/util").Region[];
142
147
  refNameAliases: {
143
148
  [x: string]: string;
144
149
  };
150
+ lowerCaseRefNameAliases: {
151
+ [x: string]: string;
152
+ };
145
153
  cytobands: import("@jbrowse/core/util").Feature[];
146
154
  }): void;
147
155
  setError(e: unknown): void;
148
156
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
149
157
  setRefNameAliases(aliases: {
150
158
  [x: string]: string;
159
+ }, lowerCaseAliases: {
160
+ [x: string]: string;
151
161
  }): void;
152
162
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
153
163
  setLoadingP(p?: Promise<void>): void;
@@ -178,11 +188,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
178
188
  refNameAliases: {
179
189
  [x: string]: string;
180
190
  } | undefined;
181
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
182
- } & {
183
- readonly lowerCaseRefNameAliases: {
184
- [k: string]: string;
191
+ lowerCaseRefNameAliases: {
192
+ [x: string]: string;
185
193
  } | undefined;
194
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
186
195
  } & {
187
196
  getConf(arg: string): any;
188
197
  } & {
@@ -205,17 +214,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
205
214
  getRefNameColor(refName: string): string | undefined;
206
215
  isValidRefName(refName: string): boolean;
207
216
  } & {
208
- setLoaded({ regions, refNameAliases, cytobands, }: {
217
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
209
218
  regions: import("@jbrowse/core/util").Region[];
210
219
  refNameAliases: {
211
220
  [x: string]: string;
212
221
  };
222
+ lowerCaseRefNameAliases: {
223
+ [x: string]: string;
224
+ };
213
225
  cytobands: import("@jbrowse/core/util").Feature[];
214
226
  }): void;
215
227
  setError(e: unknown): void;
216
228
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
217
229
  setRefNameAliases(aliases: {
218
230
  [x: string]: string;
231
+ }, lowerCaseAliases: {
232
+ [x: string]: string;
219
233
  }): void;
220
234
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
221
235
  setLoadingP(p?: Promise<void>): void;
@@ -244,11 +258,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
244
258
  refNameAliases: {
245
259
  [x: string]: string;
246
260
  } | undefined;
247
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
248
- } & {
249
- readonly lowerCaseRefNameAliases: {
250
- [k: string]: string;
261
+ lowerCaseRefNameAliases: {
262
+ [x: string]: string;
251
263
  } | undefined;
264
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
252
265
  } & {
253
266
  getConf(arg: string): any;
254
267
  } & {
@@ -271,17 +284,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
271
284
  getRefNameColor(refName: string): string | undefined;
272
285
  isValidRefName(refName: string): boolean;
273
286
  } & {
274
- setLoaded({ regions, refNameAliases, cytobands, }: {
287
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
275
288
  regions: import("@jbrowse/core/util").Region[];
276
289
  refNameAliases: {
277
290
  [x: string]: string;
278
291
  };
292
+ lowerCaseRefNameAliases: {
293
+ [x: string]: string;
294
+ };
279
295
  cytobands: import("@jbrowse/core/util").Feature[];
280
296
  }): void;
281
297
  setError(e: unknown): void;
282
298
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
283
299
  setRefNameAliases(aliases: {
284
300
  [x: string]: string;
301
+ }, lowerCaseAliases: {
302
+ [x: string]: string;
285
303
  }): void;
286
304
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
287
305
  setLoadingP(p?: Promise<void>): void;
@@ -312,11 +330,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
312
330
  refNameAliases: {
313
331
  [x: string]: string;
314
332
  } | undefined;
315
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
316
- } & {
317
- readonly lowerCaseRefNameAliases: {
318
- [k: string]: string;
333
+ lowerCaseRefNameAliases: {
334
+ [x: string]: string;
319
335
  } | undefined;
336
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
320
337
  } & {
321
338
  getConf(arg: string): any;
322
339
  } & {
@@ -339,17 +356,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
339
356
  getRefNameColor(refName: string): string | undefined;
340
357
  isValidRefName(refName: string): boolean;
341
358
  } & {
342
- setLoaded({ regions, refNameAliases, cytobands, }: {
359
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
343
360
  regions: import("@jbrowse/core/util").Region[];
344
361
  refNameAliases: {
345
362
  [x: string]: string;
346
363
  };
364
+ lowerCaseRefNameAliases: {
365
+ [x: string]: string;
366
+ };
347
367
  cytobands: import("@jbrowse/core/util").Feature[];
348
368
  }): void;
349
369
  setError(e: unknown): void;
350
370
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
351
371
  setRefNameAliases(aliases: {
352
372
  [x: string]: string;
373
+ }, lowerCaseAliases: {
374
+ [x: string]: string;
353
375
  }): void;
354
376
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
355
377
  setLoadingP(p?: Promise<void>): void;
@@ -378,11 +400,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
378
400
  refNameAliases: {
379
401
  [x: string]: string;
380
402
  } | undefined;
381
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
382
- } & {
383
- readonly lowerCaseRefNameAliases: {
384
- [k: string]: string;
403
+ lowerCaseRefNameAliases: {
404
+ [x: string]: string;
385
405
  } | undefined;
406
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
386
407
  } & {
387
408
  getConf(arg: string): any;
388
409
  } & {
@@ -405,17 +426,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
405
426
  getRefNameColor(refName: string): string | undefined;
406
427
  isValidRefName(refName: string): boolean;
407
428
  } & {
408
- setLoaded({ regions, refNameAliases, cytobands, }: {
429
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
409
430
  regions: import("@jbrowse/core/util").Region[];
410
431
  refNameAliases: {
411
432
  [x: string]: string;
412
433
  };
434
+ lowerCaseRefNameAliases: {
435
+ [x: string]: string;
436
+ };
413
437
  cytobands: import("@jbrowse/core/util").Feature[];
414
438
  }): void;
415
439
  setError(e: unknown): void;
416
440
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
417
441
  setRefNameAliases(aliases: {
418
442
  [x: string]: string;
443
+ }, lowerCaseAliases: {
444
+ [x: string]: string;
419
445
  }): void;
420
446
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
421
447
  setLoadingP(p?: Promise<void>): void;
@@ -449,11 +475,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
449
475
  refNameAliases: {
450
476
  [x: string]: string;
451
477
  } | undefined;
452
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
453
- } & {
454
- readonly lowerCaseRefNameAliases: {
455
- [k: string]: string;
478
+ lowerCaseRefNameAliases: {
479
+ [x: string]: string;
456
480
  } | undefined;
481
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
457
482
  } & {
458
483
  getConf(arg: string): any;
459
484
  } & {
@@ -476,17 +501,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
476
501
  getRefNameColor(refName: string): string | undefined;
477
502
  isValidRefName(refName: string): boolean;
478
503
  } & {
479
- setLoaded({ regions, refNameAliases, cytobands, }: {
504
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
480
505
  regions: import("@jbrowse/core/util").Region[];
481
506
  refNameAliases: {
482
507
  [x: string]: string;
483
508
  };
509
+ lowerCaseRefNameAliases: {
510
+ [x: string]: string;
511
+ };
484
512
  cytobands: import("@jbrowse/core/util").Feature[];
485
513
  }): void;
486
514
  setError(e: unknown): void;
487
515
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
488
516
  setRefNameAliases(aliases: {
489
517
  [x: string]: string;
518
+ }, lowerCaseAliases: {
519
+ [x: string]: string;
490
520
  }): void;
491
521
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
492
522
  setLoadingP(p?: Promise<void>): void;
@@ -515,11 +545,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
515
545
  refNameAliases: {
516
546
  [x: string]: string;
517
547
  } | undefined;
518
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
519
- } & {
520
- readonly lowerCaseRefNameAliases: {
521
- [k: string]: string;
548
+ lowerCaseRefNameAliases: {
549
+ [x: string]: string;
522
550
  } | undefined;
551
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
523
552
  } & {
524
553
  getConf(arg: string): any;
525
554
  } & {
@@ -542,17 +571,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
542
571
  getRefNameColor(refName: string): string | undefined;
543
572
  isValidRefName(refName: string): boolean;
544
573
  } & {
545
- setLoaded({ regions, refNameAliases, cytobands, }: {
574
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
546
575
  regions: import("@jbrowse/core/util").Region[];
547
576
  refNameAliases: {
548
577
  [x: string]: string;
549
578
  };
579
+ lowerCaseRefNameAliases: {
580
+ [x: string]: string;
581
+ };
550
582
  cytobands: import("@jbrowse/core/util").Feature[];
551
583
  }): void;
552
584
  setError(e: unknown): void;
553
585
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
554
586
  setRefNameAliases(aliases: {
555
587
  [x: string]: string;
588
+ }, lowerCaseAliases: {
589
+ [x: string]: string;
556
590
  }): void;
557
591
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
558
592
  setLoadingP(p?: Promise<void>): void;
@@ -607,17 +641,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
607
641
  refNameAliases: {
608
642
  [x: string]: string;
609
643
  } | undefined;
610
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
611
- } & {
612
- readonly lowerCaseRefNameAliases: {
613
- [k: string]: string;
644
+ lowerCaseRefNameAliases: {
645
+ [x: string]: string;
614
646
  } | undefined;
647
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
615
648
  } & {
616
649
  getConf(arg: string): any;
617
650
  } & {
618
651
  readonly initialized: boolean;
619
652
  readonly name: string;
620
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
653
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly" /**
654
+ * #action
655
+ */).BasicRegion[] | undefined;
621
656
  readonly aliases: string[];
622
657
  readonly displayName: string | undefined;
623
658
  hasName(name: string): boolean;
@@ -634,17 +669,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
634
669
  getRefNameColor(refName: string): string | undefined;
635
670
  isValidRefName(refName: string): boolean;
636
671
  } & {
637
- setLoaded({ regions, refNameAliases, cytobands, }: {
672
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
638
673
  regions: import("@jbrowse/core/util").Region[];
639
674
  refNameAliases: {
640
675
  [x: string]: string;
641
676
  };
677
+ lowerCaseRefNameAliases: {
678
+ [x: string]: string;
679
+ };
642
680
  cytobands: import("@jbrowse/core/util").Feature[];
643
681
  }): void;
644
682
  setError(e: unknown): void;
645
683
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
646
684
  setRefNameAliases(aliases: {
647
685
  [x: string]: string;
686
+ }, lowerCaseAliases: {
687
+ [x: string]: string;
648
688
  }): void;
649
689
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
650
690
  setLoadingP(p?: Promise<void>): void;
@@ -675,11 +715,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
675
715
  refNameAliases: {
676
716
  [x: string]: string;
677
717
  } | undefined;
678
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
679
- } & {
680
- readonly lowerCaseRefNameAliases: {
681
- [k: string]: string;
718
+ lowerCaseRefNameAliases: {
719
+ [x: string]: string;
682
720
  } | undefined;
721
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
683
722
  } & {
684
723
  getConf(arg: string): any;
685
724
  } & {
@@ -702,17 +741,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
702
741
  getRefNameColor(refName: string): string | undefined;
703
742
  isValidRefName(refName: string): boolean;
704
743
  } & {
705
- setLoaded({ regions, refNameAliases, cytobands, }: {
744
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
706
745
  regions: import("@jbrowse/core/util").Region[];
707
746
  refNameAliases: {
708
747
  [x: string]: string;
709
748
  };
749
+ lowerCaseRefNameAliases: {
750
+ [x: string]: string;
751
+ };
710
752
  cytobands: import("@jbrowse/core/util").Feature[];
711
753
  }): void;
712
754
  setError(e: unknown): void;
713
755
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
714
756
  setRefNameAliases(aliases: {
715
757
  [x: string]: string;
758
+ }, lowerCaseAliases: {
759
+ [x: string]: string;
716
760
  }): void;
717
761
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
718
762
  setLoadingP(p?: Promise<void>): void;
@@ -741,11 +785,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
741
785
  refNameAliases: {
742
786
  [x: string]: string;
743
787
  } | undefined;
744
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
745
- } & {
746
- readonly lowerCaseRefNameAliases: {
747
- [k: string]: string;
788
+ lowerCaseRefNameAliases: {
789
+ [x: string]: string;
748
790
  } | undefined;
791
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
749
792
  } & {
750
793
  getConf(arg: string): any;
751
794
  } & {
@@ -768,17 +811,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
768
811
  getRefNameColor(refName: string): string | undefined;
769
812
  isValidRefName(refName: string): boolean;
770
813
  } & {
771
- setLoaded({ regions, refNameAliases, cytobands, }: {
814
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
772
815
  regions: import("@jbrowse/core/util").Region[];
773
816
  refNameAliases: {
774
817
  [x: string]: string;
775
818
  };
819
+ lowerCaseRefNameAliases: {
820
+ [x: string]: string;
821
+ };
776
822
  cytobands: import("@jbrowse/core/util").Feature[];
777
823
  }): void;
778
824
  setError(e: unknown): void;
779
825
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
780
826
  setRefNameAliases(aliases: {
781
827
  [x: string]: string;
828
+ }, lowerCaseAliases: {
829
+ [x: string]: string;
782
830
  }): void;
783
831
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
784
832
  setLoadingP(p?: Promise<void>): void;
@@ -809,11 +857,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
809
857
  refNameAliases: {
810
858
  [x: string]: string;
811
859
  } | undefined;
812
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
813
- } & {
814
- readonly lowerCaseRefNameAliases: {
815
- [k: string]: string;
860
+ lowerCaseRefNameAliases: {
861
+ [x: string]: string;
816
862
  } | undefined;
863
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
817
864
  } & {
818
865
  getConf(arg: string): any;
819
866
  } & {
@@ -836,17 +883,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
836
883
  getRefNameColor(refName: string): string | undefined;
837
884
  isValidRefName(refName: string): boolean;
838
885
  } & {
839
- setLoaded({ regions, refNameAliases, cytobands, }: {
886
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
840
887
  regions: import("@jbrowse/core/util").Region[];
841
888
  refNameAliases: {
842
889
  [x: string]: string;
843
890
  };
891
+ lowerCaseRefNameAliases: {
892
+ [x: string]: string;
893
+ };
844
894
  cytobands: import("@jbrowse/core/util").Feature[];
845
895
  }): void;
846
896
  setError(e: unknown): void;
847
897
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
848
898
  setRefNameAliases(aliases: {
849
899
  [x: string]: string;
900
+ }, lowerCaseAliases: {
901
+ [x: string]: string;
850
902
  }): void;
851
903
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
852
904
  setLoadingP(p?: Promise<void>): void;
@@ -875,11 +927,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
875
927
  refNameAliases: {
876
928
  [x: string]: string;
877
929
  } | undefined;
878
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
879
- } & {
880
- readonly lowerCaseRefNameAliases: {
881
- [k: string]: string;
930
+ lowerCaseRefNameAliases: {
931
+ [x: string]: string;
882
932
  } | undefined;
933
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
883
934
  } & {
884
935
  getConf(arg: string): any;
885
936
  } & {
@@ -902,17 +953,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
902
953
  getRefNameColor(refName: string): string | undefined;
903
954
  isValidRefName(refName: string): boolean;
904
955
  } & {
905
- setLoaded({ regions, refNameAliases, cytobands, }: {
956
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
906
957
  regions: import("@jbrowse/core/util").Region[];
907
958
  refNameAliases: {
908
959
  [x: string]: string;
909
960
  };
961
+ lowerCaseRefNameAliases: {
962
+ [x: string]: string;
963
+ };
910
964
  cytobands: import("@jbrowse/core/util").Feature[];
911
965
  }): void;
912
966
  setError(e: unknown): void;
913
967
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
914
968
  setRefNameAliases(aliases: {
915
969
  [x: string]: string;
970
+ }, lowerCaseAliases: {
971
+ [x: string]: string;
916
972
  }): void;
917
973
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
918
974
  setLoadingP(p?: Promise<void>): void;
@@ -946,11 +1002,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
946
1002
  refNameAliases: {
947
1003
  [x: string]: string;
948
1004
  } | undefined;
949
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
950
- } & {
951
- readonly lowerCaseRefNameAliases: {
952
- [k: string]: string;
1005
+ lowerCaseRefNameAliases: {
1006
+ [x: string]: string;
953
1007
  } | undefined;
1008
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
954
1009
  } & {
955
1010
  getConf(arg: string): any;
956
1011
  } & {
@@ -973,17 +1028,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
973
1028
  getRefNameColor(refName: string): string | undefined;
974
1029
  isValidRefName(refName: string): boolean;
975
1030
  } & {
976
- setLoaded({ regions, refNameAliases, cytobands, }: {
1031
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
977
1032
  regions: import("@jbrowse/core/util").Region[];
978
1033
  refNameAliases: {
979
1034
  [x: string]: string;
980
1035
  };
1036
+ lowerCaseRefNameAliases: {
1037
+ [x: string]: string;
1038
+ };
981
1039
  cytobands: import("@jbrowse/core/util").Feature[];
982
1040
  }): void;
983
1041
  setError(e: unknown): void;
984
1042
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
985
1043
  setRefNameAliases(aliases: {
986
1044
  [x: string]: string;
1045
+ }, lowerCaseAliases: {
1046
+ [x: string]: string;
987
1047
  }): void;
988
1048
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
989
1049
  setLoadingP(p?: Promise<void>): void;
@@ -1012,11 +1072,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1012
1072
  refNameAliases: {
1013
1073
  [x: string]: string;
1014
1074
  } | undefined;
1015
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1016
- } & {
1017
- readonly lowerCaseRefNameAliases: {
1018
- [k: string]: string;
1075
+ lowerCaseRefNameAliases: {
1076
+ [x: string]: string;
1019
1077
  } | undefined;
1078
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1020
1079
  } & {
1021
1080
  getConf(arg: string): any;
1022
1081
  } & {
@@ -1039,17 +1098,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1039
1098
  getRefNameColor(refName: string): string | undefined;
1040
1099
  isValidRefName(refName: string): boolean;
1041
1100
  } & {
1042
- setLoaded({ regions, refNameAliases, cytobands, }: {
1101
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1043
1102
  regions: import("@jbrowse/core/util").Region[];
1044
1103
  refNameAliases: {
1045
1104
  [x: string]: string;
1046
1105
  };
1106
+ lowerCaseRefNameAliases: {
1107
+ [x: string]: string;
1108
+ };
1047
1109
  cytobands: import("@jbrowse/core/util").Feature[];
1048
1110
  }): void;
1049
1111
  setError(e: unknown): void;
1050
1112
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1051
1113
  setRefNameAliases(aliases: {
1052
1114
  [x: string]: string;
1115
+ }, lowerCaseAliases: {
1116
+ [x: string]: string;
1053
1117
  }): void;
1054
1118
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1055
1119
  setLoadingP(p?: Promise<void>): void;
@@ -1119,11 +1183,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1119
1183
  refNameAliases: {
1120
1184
  [x: string]: string;
1121
1185
  } | undefined;
1122
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1123
- } & {
1124
- readonly lowerCaseRefNameAliases: {
1125
- [k: string]: string;
1186
+ lowerCaseRefNameAliases: {
1187
+ [x: string]: string;
1126
1188
  } | undefined;
1189
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1127
1190
  } & {
1128
1191
  getConf(arg: string): any;
1129
1192
  } & {
@@ -1146,17 +1209,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1146
1209
  getRefNameColor(refName: string): string | undefined;
1147
1210
  isValidRefName(refName: string): boolean;
1148
1211
  } & {
1149
- setLoaded({ regions, refNameAliases, cytobands, }: {
1212
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1150
1213
  regions: import("@jbrowse/core/util").Region[];
1151
1214
  refNameAliases: {
1152
1215
  [x: string]: string;
1153
1216
  };
1217
+ lowerCaseRefNameAliases: {
1218
+ [x: string]: string;
1219
+ };
1154
1220
  cytobands: import("@jbrowse/core/util").Feature[];
1155
1221
  }): void;
1156
1222
  setError(e: unknown): void;
1157
1223
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1158
1224
  setRefNameAliases(aliases: {
1159
1225
  [x: string]: string;
1226
+ }, lowerCaseAliases: {
1227
+ [x: string]: string;
1160
1228
  }): void;
1161
1229
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1162
1230
  setLoadingP(p?: Promise<void>): void;
@@ -1187,11 +1255,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1187
1255
  refNameAliases: {
1188
1256
  [x: string]: string;
1189
1257
  } | undefined;
1190
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1191
- } & {
1192
- readonly lowerCaseRefNameAliases: {
1193
- [k: string]: string;
1258
+ lowerCaseRefNameAliases: {
1259
+ [x: string]: string;
1194
1260
  } | undefined;
1261
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1195
1262
  } & {
1196
1263
  getConf(arg: string): any;
1197
1264
  } & {
@@ -1214,17 +1281,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1214
1281
  getRefNameColor(refName: string): string | undefined;
1215
1282
  isValidRefName(refName: string): boolean;
1216
1283
  } & {
1217
- setLoaded({ regions, refNameAliases, cytobands, }: {
1284
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1218
1285
  regions: import("@jbrowse/core/util").Region[];
1219
1286
  refNameAliases: {
1220
1287
  [x: string]: string;
1221
1288
  };
1289
+ lowerCaseRefNameAliases: {
1290
+ [x: string]: string;
1291
+ };
1222
1292
  cytobands: import("@jbrowse/core/util").Feature[];
1223
1293
  }): void;
1224
1294
  setError(e: unknown): void;
1225
1295
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1226
1296
  setRefNameAliases(aliases: {
1227
1297
  [x: string]: string;
1298
+ }, lowerCaseAliases: {
1299
+ [x: string]: string;
1228
1300
  }): void;
1229
1301
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1230
1302
  setLoadingP(p?: Promise<void>): void;
@@ -1253,11 +1325,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1253
1325
  refNameAliases: {
1254
1326
  [x: string]: string;
1255
1327
  } | undefined;
1256
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1257
- } & {
1258
- readonly lowerCaseRefNameAliases: {
1259
- [k: string]: string;
1328
+ lowerCaseRefNameAliases: {
1329
+ [x: string]: string;
1260
1330
  } | undefined;
1331
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1261
1332
  } & {
1262
1333
  getConf(arg: string): any;
1263
1334
  } & {
@@ -1280,17 +1351,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1280
1351
  getRefNameColor(refName: string): string | undefined;
1281
1352
  isValidRefName(refName: string): boolean;
1282
1353
  } & {
1283
- setLoaded({ regions, refNameAliases, cytobands, }: {
1354
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1284
1355
  regions: import("@jbrowse/core/util").Region[];
1285
1356
  refNameAliases: {
1286
1357
  [x: string]: string;
1287
1358
  };
1359
+ lowerCaseRefNameAliases: {
1360
+ [x: string]: string;
1361
+ };
1288
1362
  cytobands: import("@jbrowse/core/util").Feature[];
1289
1363
  }): void;
1290
1364
  setError(e: unknown): void;
1291
1365
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1292
1366
  setRefNameAliases(aliases: {
1293
1367
  [x: string]: string;
1368
+ }, lowerCaseAliases: {
1369
+ [x: string]: string;
1294
1370
  }): void;
1295
1371
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1296
1372
  setLoadingP(p?: Promise<void>): void;
@@ -1321,11 +1397,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1321
1397
  refNameAliases: {
1322
1398
  [x: string]: string;
1323
1399
  } | undefined;
1324
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1325
- } & {
1326
- readonly lowerCaseRefNameAliases: {
1327
- [k: string]: string;
1400
+ lowerCaseRefNameAliases: {
1401
+ [x: string]: string;
1328
1402
  } | undefined;
1403
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1329
1404
  } & {
1330
1405
  getConf(arg: string): any;
1331
1406
  } & {
@@ -1348,17 +1423,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1348
1423
  getRefNameColor(refName: string): string | undefined;
1349
1424
  isValidRefName(refName: string): boolean;
1350
1425
  } & {
1351
- setLoaded({ regions, refNameAliases, cytobands, }: {
1426
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1352
1427
  regions: import("@jbrowse/core/util").Region[];
1353
1428
  refNameAliases: {
1354
1429
  [x: string]: string;
1355
1430
  };
1431
+ lowerCaseRefNameAliases: {
1432
+ [x: string]: string;
1433
+ };
1356
1434
  cytobands: import("@jbrowse/core/util").Feature[];
1357
1435
  }): void;
1358
1436
  setError(e: unknown): void;
1359
1437
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1360
1438
  setRefNameAliases(aliases: {
1361
1439
  [x: string]: string;
1440
+ }, lowerCaseAliases: {
1441
+ [x: string]: string;
1362
1442
  }): void;
1363
1443
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1364
1444
  setLoadingP(p?: Promise<void>): void;
@@ -1387,11 +1467,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1387
1467
  refNameAliases: {
1388
1468
  [x: string]: string;
1389
1469
  } | undefined;
1390
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1391
- } & {
1392
- readonly lowerCaseRefNameAliases: {
1393
- [k: string]: string;
1470
+ lowerCaseRefNameAliases: {
1471
+ [x: string]: string;
1394
1472
  } | undefined;
1473
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1395
1474
  } & {
1396
1475
  getConf(arg: string): any;
1397
1476
  } & {
@@ -1414,17 +1493,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1414
1493
  getRefNameColor(refName: string): string | undefined;
1415
1494
  isValidRefName(refName: string): boolean;
1416
1495
  } & {
1417
- setLoaded({ regions, refNameAliases, cytobands, }: {
1496
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1418
1497
  regions: import("@jbrowse/core/util").Region[];
1419
1498
  refNameAliases: {
1420
1499
  [x: string]: string;
1421
1500
  };
1501
+ lowerCaseRefNameAliases: {
1502
+ [x: string]: string;
1503
+ };
1422
1504
  cytobands: import("@jbrowse/core/util").Feature[];
1423
1505
  }): void;
1424
1506
  setError(e: unknown): void;
1425
1507
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1426
1508
  setRefNameAliases(aliases: {
1427
1509
  [x: string]: string;
1510
+ }, lowerCaseAliases: {
1511
+ [x: string]: string;
1428
1512
  }): void;
1429
1513
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1430
1514
  setLoadingP(p?: Promise<void>): void;
@@ -1458,11 +1542,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1458
1542
  refNameAliases: {
1459
1543
  [x: string]: string;
1460
1544
  } | undefined;
1461
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1462
- } & {
1463
- readonly lowerCaseRefNameAliases: {
1464
- [k: string]: string;
1545
+ lowerCaseRefNameAliases: {
1546
+ [x: string]: string;
1465
1547
  } | undefined;
1548
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1466
1549
  } & {
1467
1550
  getConf(arg: string): any;
1468
1551
  } & {
@@ -1485,17 +1568,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1485
1568
  getRefNameColor(refName: string): string | undefined;
1486
1569
  isValidRefName(refName: string): boolean;
1487
1570
  } & {
1488
- setLoaded({ regions, refNameAliases, cytobands, }: {
1571
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1489
1572
  regions: import("@jbrowse/core/util").Region[];
1490
1573
  refNameAliases: {
1491
1574
  [x: string]: string;
1492
1575
  };
1576
+ lowerCaseRefNameAliases: {
1577
+ [x: string]: string;
1578
+ };
1493
1579
  cytobands: import("@jbrowse/core/util").Feature[];
1494
1580
  }): void;
1495
1581
  setError(e: unknown): void;
1496
1582
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1497
1583
  setRefNameAliases(aliases: {
1498
1584
  [x: string]: string;
1585
+ }, lowerCaseAliases: {
1586
+ [x: string]: string;
1499
1587
  }): void;
1500
1588
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1501
1589
  setLoadingP(p?: Promise<void>): void;
@@ -1524,11 +1612,10 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1524
1612
  refNameAliases: {
1525
1613
  [x: string]: string;
1526
1614
  } | undefined;
1527
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1528
- } & {
1529
- readonly lowerCaseRefNameAliases: {
1530
- [k: string]: string;
1615
+ lowerCaseRefNameAliases: {
1616
+ [x: string]: string;
1531
1617
  } | undefined;
1618
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1532
1619
  } & {
1533
1620
  getConf(arg: string): any;
1534
1621
  } & {
@@ -1551,17 +1638,22 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
1551
1638
  getRefNameColor(refName: string): string | undefined;
1552
1639
  isValidRefName(refName: string): boolean;
1553
1640
  } & {
1554
- setLoaded({ regions, refNameAliases, cytobands, }: {
1641
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1555
1642
  regions: import("@jbrowse/core/util").Region[];
1556
1643
  refNameAliases: {
1557
1644
  [x: string]: string;
1558
1645
  };
1646
+ lowerCaseRefNameAliases: {
1647
+ [x: string]: string;
1648
+ };
1559
1649
  cytobands: import("@jbrowse/core/util").Feature[];
1560
1650
  }): void;
1561
1651
  setError(e: unknown): void;
1562
1652
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1563
1653
  setRefNameAliases(aliases: {
1564
1654
  [x: string]: string;
1655
+ }, lowerCaseAliases: {
1656
+ [x: string]: string;
1565
1657
  }): void;
1566
1658
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1567
1659
  setLoadingP(p?: Promise<void>): void;