@jbrowse/product-core 2.15.0 → 2.15.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +63 -35
  2. package/dist/Session/MultipleViews.d.ts +204 -112
  3. package/dist/Session/SessionTracks.d.ts +198 -110
  4. package/dist/Session/Tracks.d.ts +198 -110
  5. package/dist/ui/RefNameInfoDialog.js +9 -7
  6. package/esm/RootModel/BaseRootModel.d.ts +63 -35
  7. package/esm/Session/MultipleViews.d.ts +204 -112
  8. package/esm/Session/SessionTracks.d.ts +198 -110
  9. package/esm/Session/Tracks.d.ts +198 -110
  10. package/esm/ui/RefNameInfoDialog.js +11 -9
  11. package/package.json +3 -3
package/dist/Session/SessionTracks.d.ts CHANGED
@@ -31,11 +31,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
31
31
  refNameAliases: {
32
32
  [x: string]: string;
33
33
  } | undefined;
34
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
35
- } & {
36
- readonly lowerCaseRefNameAliases: {
37
- [k: string]: string;
34
+ lowerCaseRefNameAliases: {
35
+ [x: string]: string;
38
36
  } | undefined;
37
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
39
38
  } & {
40
39
  getConf(arg: string): any;
41
40
  } & {
@@ -58,17 +57,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
58
57
  getRefNameColor(refName: string): string | undefined;
59
58
  isValidRefName(refName: string): boolean;
60
59
  } & {
61
- setLoaded({ regions, refNameAliases, cytobands, }: {
60
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
62
61
  regions: import("@jbrowse/core/util").Region[];
63
62
  refNameAliases: {
64
63
  [x: string]: string;
65
64
  };
65
+ lowerCaseRefNameAliases: {
66
+ [x: string]: string;
67
+ };
66
68
  cytobands: import("@jbrowse/core/util").Feature[];
67
69
  }): void;
68
70
  setError(e: unknown): void;
69
71
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
70
72
  setRefNameAliases(aliases: {
71
73
  [x: string]: string;
74
+ }, lowerCaseAliases: {
75
+ [x: string]: string;
72
76
  }): void;
73
77
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
74
78
  setLoadingP(p?: Promise<void>): void;
@@ -97,11 +101,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
97
101
  refNameAliases: {
98
102
  [x: string]: string;
99
103
  } | undefined;
100
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
101
- } & {
102
- readonly lowerCaseRefNameAliases: {
103
- [k: string]: string;
104
+ lowerCaseRefNameAliases: {
105
+ [x: string]: string;
104
106
  } | undefined;
107
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
105
108
  } & {
106
109
  getConf(arg: string): any;
107
110
  } & {
@@ -124,17 +127,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
124
127
  getRefNameColor(refName: string): string | undefined;
125
128
  isValidRefName(refName: string): boolean;
126
129
  } & {
127
- setLoaded({ regions, refNameAliases, cytobands, }: {
130
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
128
131
  regions: import("@jbrowse/core/util").Region[];
129
132
  refNameAliases: {
130
133
  [x: string]: string;
131
134
  };
135
+ lowerCaseRefNameAliases: {
136
+ [x: string]: string;
137
+ };
132
138
  cytobands: import("@jbrowse/core/util").Feature[];
133
139
  }): void;
134
140
  setError(e: unknown): void;
135
141
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
136
142
  setRefNameAliases(aliases: {
137
143
  [x: string]: string;
144
+ }, lowerCaseAliases: {
145
+ [x: string]: string;
138
146
  }): void;
139
147
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
140
148
  setLoadingP(p?: Promise<void>): void;
@@ -165,11 +173,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
165
173
  refNameAliases: {
166
174
  [x: string]: string;
167
175
  } | undefined;
168
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
169
- } & {
170
- readonly lowerCaseRefNameAliases: {
171
- [k: string]: string;
176
+ lowerCaseRefNameAliases: {
177
+ [x: string]: string;
172
178
  } | undefined;
179
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
173
180
  } & {
174
181
  getConf(arg: string): any;
175
182
  } & {
@@ -192,17 +199,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
192
199
  getRefNameColor(refName: string): string | undefined;
193
200
  isValidRefName(refName: string): boolean;
194
201
  } & {
195
- setLoaded({ regions, refNameAliases, cytobands, }: {
202
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
196
203
  regions: import("@jbrowse/core/util").Region[];
197
204
  refNameAliases: {
198
205
  [x: string]: string;
199
206
  };
207
+ lowerCaseRefNameAliases: {
208
+ [x: string]: string;
209
+ };
200
210
  cytobands: import("@jbrowse/core/util").Feature[];
201
211
  }): void;
202
212
  setError(e: unknown): void;
203
213
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
204
214
  setRefNameAliases(aliases: {
205
215
  [x: string]: string;
216
+ }, lowerCaseAliases: {
217
+ [x: string]: string;
206
218
  }): void;
207
219
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
208
220
  setLoadingP(p?: Promise<void>): void;
@@ -231,11 +243,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
231
243
  refNameAliases: {
232
244
  [x: string]: string;
233
245
  } | undefined;
234
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
235
- } & {
236
- readonly lowerCaseRefNameAliases: {
237
- [k: string]: string;
246
+ lowerCaseRefNameAliases: {
247
+ [x: string]: string;
238
248
  } | undefined;
249
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
239
250
  } & {
240
251
  getConf(arg: string): any;
241
252
  } & {
@@ -258,17 +269,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
258
269
  getRefNameColor(refName: string): string | undefined;
259
270
  isValidRefName(refName: string): boolean;
260
271
  } & {
261
- setLoaded({ regions, refNameAliases, cytobands, }: {
272
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
262
273
  regions: import("@jbrowse/core/util").Region[];
263
274
  refNameAliases: {
264
275
  [x: string]: string;
265
276
  };
277
+ lowerCaseRefNameAliases: {
278
+ [x: string]: string;
279
+ };
266
280
  cytobands: import("@jbrowse/core/util").Feature[];
267
281
  }): void;
268
282
  setError(e: unknown): void;
269
283
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
270
284
  setRefNameAliases(aliases: {
271
285
  [x: string]: string;
286
+ }, lowerCaseAliases: {
287
+ [x: string]: string;
272
288
  }): void;
273
289
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
274
290
  setLoadingP(p?: Promise<void>): void;
@@ -299,11 +315,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
299
315
  refNameAliases: {
300
316
  [x: string]: string;
301
317
  } | undefined;
302
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
303
- } & {
304
- readonly lowerCaseRefNameAliases: {
305
- [k: string]: string;
318
+ lowerCaseRefNameAliases: {
319
+ [x: string]: string;
306
320
  } | undefined;
321
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
307
322
  } & {
308
323
  getConf(arg: string): any;
309
324
  } & {
@@ -326,17 +341,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
326
341
  getRefNameColor(refName: string): string | undefined;
327
342
  isValidRefName(refName: string): boolean;
328
343
  } & {
329
- setLoaded({ regions, refNameAliases, cytobands, }: {
344
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
330
345
  regions: import("@jbrowse/core/util").Region[];
331
346
  refNameAliases: {
332
347
  [x: string]: string;
333
348
  };
349
+ lowerCaseRefNameAliases: {
350
+ [x: string]: string;
351
+ };
334
352
  cytobands: import("@jbrowse/core/util").Feature[];
335
353
  }): void;
336
354
  setError(e: unknown): void;
337
355
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
338
356
  setRefNameAliases(aliases: {
339
357
  [x: string]: string;
358
+ }, lowerCaseAliases: {
359
+ [x: string]: string;
340
360
  }): void;
341
361
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
342
362
  setLoadingP(p?: Promise<void>): void;
@@ -365,11 +385,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
365
385
  refNameAliases: {
366
386
  [x: string]: string;
367
387
  } | undefined;
368
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
369
- } & {
370
- readonly lowerCaseRefNameAliases: {
371
- [k: string]: string;
388
+ lowerCaseRefNameAliases: {
389
+ [x: string]: string;
372
390
  } | undefined;
391
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
373
392
  } & {
374
393
  getConf(arg: string): any;
375
394
  } & {
@@ -392,17 +411,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
392
411
  getRefNameColor(refName: string): string | undefined;
393
412
  isValidRefName(refName: string): boolean;
394
413
  } & {
395
- setLoaded({ regions, refNameAliases, cytobands, }: {
414
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
396
415
  regions: import("@jbrowse/core/util").Region[];
397
416
  refNameAliases: {
398
417
  [x: string]: string;
399
418
  };
419
+ lowerCaseRefNameAliases: {
420
+ [x: string]: string;
421
+ };
400
422
  cytobands: import("@jbrowse/core/util").Feature[];
401
423
  }): void;
402
424
  setError(e: unknown): void;
403
425
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
404
426
  setRefNameAliases(aliases: {
405
427
  [x: string]: string;
428
+ }, lowerCaseAliases: {
429
+ [x: string]: string;
406
430
  }): void;
407
431
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
408
432
  setLoadingP(p?: Promise<void>): void;
@@ -436,11 +460,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
436
460
  refNameAliases: {
437
461
  [x: string]: string;
438
462
  } | undefined;
439
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
440
- } & {
441
- readonly lowerCaseRefNameAliases: {
442
- [k: string]: string;
463
+ lowerCaseRefNameAliases: {
464
+ [x: string]: string;
443
465
  } | undefined;
466
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
444
467
  } & {
445
468
  getConf(arg: string): any;
446
469
  } & {
@@ -463,17 +486,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
463
486
  getRefNameColor(refName: string): string | undefined;
464
487
  isValidRefName(refName: string): boolean;
465
488
  } & {
466
- setLoaded({ regions, refNameAliases, cytobands, }: {
489
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
467
490
  regions: import("@jbrowse/core/util").Region[];
468
491
  refNameAliases: {
469
492
  [x: string]: string;
470
493
  };
494
+ lowerCaseRefNameAliases: {
495
+ [x: string]: string;
496
+ };
471
497
  cytobands: import("@jbrowse/core/util").Feature[];
472
498
  }): void;
473
499
  setError(e: unknown): void;
474
500
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
475
501
  setRefNameAliases(aliases: {
476
502
  [x: string]: string;
503
+ }, lowerCaseAliases: {
504
+ [x: string]: string;
477
505
  }): void;
478
506
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
479
507
  setLoadingP(p?: Promise<void>): void;
@@ -502,11 +530,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
502
530
  refNameAliases: {
503
531
  [x: string]: string;
504
532
  } | undefined;
505
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
506
- } & {
507
- readonly lowerCaseRefNameAliases: {
508
- [k: string]: string;
533
+ lowerCaseRefNameAliases: {
534
+ [x: string]: string;
509
535
  } | undefined;
536
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
510
537
  } & {
511
538
  getConf(arg: string): any;
512
539
  } & {
@@ -529,17 +556,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
529
556
  getRefNameColor(refName: string): string | undefined;
530
557
  isValidRefName(refName: string): boolean;
531
558
  } & {
532
- setLoaded({ regions, refNameAliases, cytobands, }: {
559
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
533
560
  regions: import("@jbrowse/core/util").Region[];
534
561
  refNameAliases: {
535
562
  [x: string]: string;
536
563
  };
564
+ lowerCaseRefNameAliases: {
565
+ [x: string]: string;
566
+ };
537
567
  cytobands: import("@jbrowse/core/util").Feature[];
538
568
  }): void;
539
569
  setError(e: unknown): void;
540
570
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
541
571
  setRefNameAliases(aliases: {
542
572
  [x: string]: string;
573
+ }, lowerCaseAliases: {
574
+ [x: string]: string;
543
575
  }): void;
544
576
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
545
577
  setLoadingP(p?: Promise<void>): void;
@@ -592,11 +624,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
592
624
  refNameAliases: {
593
625
  [x: string]: string;
594
626
  } | undefined;
595
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
596
- } & {
597
- readonly lowerCaseRefNameAliases: {
598
- [k: string]: string;
627
+ lowerCaseRefNameAliases: {
628
+ [x: string]: string;
599
629
  } | undefined;
630
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
600
631
  } & {
601
632
  getConf(arg: string): any;
602
633
  } & {
@@ -619,17 +650,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
619
650
  getRefNameColor(refName: string): string | undefined;
620
651
  isValidRefName(refName: string): boolean;
621
652
  } & {
622
- setLoaded({ regions, refNameAliases, cytobands, }: {
653
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
623
654
  regions: import("@jbrowse/core/util").Region[];
624
655
  refNameAliases: {
625
656
  [x: string]: string;
626
657
  };
658
+ lowerCaseRefNameAliases: {
659
+ [x: string]: string;
660
+ };
627
661
  cytobands: import("@jbrowse/core/util").Feature[];
628
662
  }): void;
629
663
  setError(e: unknown): void;
630
664
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
631
665
  setRefNameAliases(aliases: {
632
666
  [x: string]: string;
667
+ }, lowerCaseAliases: {
668
+ [x: string]: string;
633
669
  }): void;
634
670
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
635
671
  setLoadingP(p?: Promise<void>): void;
@@ -660,11 +696,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
660
696
  refNameAliases: {
661
697
  [x: string]: string;
662
698
  } | undefined;
663
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
664
- } & {
665
- readonly lowerCaseRefNameAliases: {
666
- [k: string]: string;
699
+ lowerCaseRefNameAliases: {
700
+ [x: string]: string;
667
701
  } | undefined;
702
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
668
703
  } & {
669
704
  getConf(arg: string): any;
670
705
  } & {
@@ -687,17 +722,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
687
722
  getRefNameColor(refName: string): string | undefined;
688
723
  isValidRefName(refName: string): boolean;
689
724
  } & {
690
- setLoaded({ regions, refNameAliases, cytobands, }: {
725
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
691
726
  regions: import("@jbrowse/core/util").Region[];
692
727
  refNameAliases: {
693
728
  [x: string]: string;
694
729
  };
730
+ lowerCaseRefNameAliases: {
731
+ [x: string]: string;
732
+ };
695
733
  cytobands: import("@jbrowse/core/util").Feature[];
696
734
  }): void;
697
735
  setError(e: unknown): void;
698
736
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
699
737
  setRefNameAliases(aliases: {
700
738
  [x: string]: string;
739
+ }, lowerCaseAliases: {
740
+ [x: string]: string;
701
741
  }): void;
702
742
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
703
743
  setLoadingP(p?: Promise<void>): void;
@@ -726,11 +766,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
726
766
  refNameAliases: {
727
767
  [x: string]: string;
728
768
  } | undefined;
729
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
730
- } & {
731
- readonly lowerCaseRefNameAliases: {
732
- [k: string]: string;
769
+ lowerCaseRefNameAliases: {
770
+ [x: string]: string;
733
771
  } | undefined;
772
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
734
773
  } & {
735
774
  getConf(arg: string): any;
736
775
  } & {
@@ -753,17 +792,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
753
792
  getRefNameColor(refName: string): string | undefined;
754
793
  isValidRefName(refName: string): boolean;
755
794
  } & {
756
- setLoaded({ regions, refNameAliases, cytobands, }: {
795
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
757
796
  regions: import("@jbrowse/core/util").Region[];
758
797
  refNameAliases: {
759
798
  [x: string]: string;
760
799
  };
800
+ lowerCaseRefNameAliases: {
801
+ [x: string]: string;
802
+ };
761
803
  cytobands: import("@jbrowse/core/util").Feature[];
762
804
  }): void;
763
805
  setError(e: unknown): void;
764
806
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
765
807
  setRefNameAliases(aliases: {
766
808
  [x: string]: string;
809
+ }, lowerCaseAliases: {
810
+ [x: string]: string;
767
811
  }): void;
768
812
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
769
813
  setLoadingP(p?: Promise<void>): void;
@@ -794,11 +838,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
794
838
  refNameAliases: {
795
839
  [x: string]: string;
796
840
  } | undefined;
797
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
798
- } & {
799
- readonly lowerCaseRefNameAliases: {
800
- [k: string]: string;
841
+ lowerCaseRefNameAliases: {
842
+ [x: string]: string;
801
843
  } | undefined;
844
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
802
845
  } & {
803
846
  getConf(arg: string): any;
804
847
  } & {
@@ -821,17 +864,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
821
864
  getRefNameColor(refName: string): string | undefined;
822
865
  isValidRefName(refName: string): boolean;
823
866
  } & {
824
- setLoaded({ regions, refNameAliases, cytobands, }: {
867
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
825
868
  regions: import("@jbrowse/core/util").Region[];
826
869
  refNameAliases: {
827
870
  [x: string]: string;
828
871
  };
872
+ lowerCaseRefNameAliases: {
873
+ [x: string]: string;
874
+ };
829
875
  cytobands: import("@jbrowse/core/util").Feature[];
830
876
  }): void;
831
877
  setError(e: unknown): void;
832
878
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
833
879
  setRefNameAliases(aliases: {
834
880
  [x: string]: string;
881
+ }, lowerCaseAliases: {
882
+ [x: string]: string;
835
883
  }): void;
836
884
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
837
885
  setLoadingP(p?: Promise<void>): void;
@@ -860,11 +908,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
860
908
  refNameAliases: {
861
909
  [x: string]: string;
862
910
  } | undefined;
863
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
864
- } & {
865
- readonly lowerCaseRefNameAliases: {
866
- [k: string]: string;
911
+ lowerCaseRefNameAliases: {
912
+ [x: string]: string;
867
913
  } | undefined;
914
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
868
915
  } & {
869
916
  getConf(arg: string): any;
870
917
  } & {
@@ -887,17 +934,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
887
934
  getRefNameColor(refName: string): string | undefined;
888
935
  isValidRefName(refName: string): boolean;
889
936
  } & {
890
- setLoaded({ regions, refNameAliases, cytobands, }: {
937
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
891
938
  regions: import("@jbrowse/core/util").Region[];
892
939
  refNameAliases: {
893
940
  [x: string]: string;
894
941
  };
942
+ lowerCaseRefNameAliases: {
943
+ [x: string]: string;
944
+ };
895
945
  cytobands: import("@jbrowse/core/util").Feature[];
896
946
  }): void;
897
947
  setError(e: unknown): void;
898
948
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
899
949
  setRefNameAliases(aliases: {
900
950
  [x: string]: string;
951
+ }, lowerCaseAliases: {
952
+ [x: string]: string;
901
953
  }): void;
902
954
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
903
955
  setLoadingP(p?: Promise<void>): void;
@@ -931,11 +983,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
931
983
  refNameAliases: {
932
984
  [x: string]: string;
933
985
  } | undefined;
934
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
935
- } & {
936
- readonly lowerCaseRefNameAliases: {
937
- [k: string]: string;
986
+ lowerCaseRefNameAliases: {
987
+ [x: string]: string;
938
988
  } | undefined;
989
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
939
990
  } & {
940
991
  getConf(arg: string): any;
941
992
  } & {
@@ -958,17 +1009,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
958
1009
  getRefNameColor(refName: string): string | undefined;
959
1010
  isValidRefName(refName: string): boolean;
960
1011
  } & {
961
- setLoaded({ regions, refNameAliases, cytobands, }: {
1012
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
962
1013
  regions: import("@jbrowse/core/util").Region[];
963
1014
  refNameAliases: {
964
1015
  [x: string]: string;
965
1016
  };
1017
+ lowerCaseRefNameAliases: {
1018
+ [x: string]: string;
1019
+ };
966
1020
  cytobands: import("@jbrowse/core/util").Feature[];
967
1021
  }): void;
968
1022
  setError(e: unknown): void;
969
1023
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
970
1024
  setRefNameAliases(aliases: {
971
1025
  [x: string]: string;
1026
+ }, lowerCaseAliases: {
1027
+ [x: string]: string;
972
1028
  }): void;
973
1029
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
974
1030
  setLoadingP(p?: Promise<void>): void;
@@ -997,11 +1053,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
997
1053
  refNameAliases: {
998
1054
  [x: string]: string;
999
1055
  } | undefined;
1000
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1001
- } & {
1002
- readonly lowerCaseRefNameAliases: {
1003
- [k: string]: string;
1056
+ lowerCaseRefNameAliases: {
1057
+ [x: string]: string;
1004
1058
  } | undefined;
1059
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1005
1060
  } & {
1006
1061
  getConf(arg: string): any;
1007
1062
  } & {
@@ -1024,17 +1079,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1024
1079
  getRefNameColor(refName: string): string | undefined;
1025
1080
  isValidRefName(refName: string): boolean;
1026
1081
  } & {
1027
- setLoaded({ regions, refNameAliases, cytobands, }: {
1082
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1028
1083
  regions: import("@jbrowse/core/util").Region[];
1029
1084
  refNameAliases: {
1030
1085
  [x: string]: string;
1031
1086
  };
1087
+ lowerCaseRefNameAliases: {
1088
+ [x: string]: string;
1089
+ };
1032
1090
  cytobands: import("@jbrowse/core/util").Feature[];
1033
1091
  }): void;
1034
1092
  setError(e: unknown): void;
1035
1093
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1036
1094
  setRefNameAliases(aliases: {
1037
1095
  [x: string]: string;
1096
+ }, lowerCaseAliases: {
1097
+ [x: string]: string;
1038
1098
  }): void;
1039
1099
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1040
1100
  setLoadingP(p?: Promise<void>): void;
@@ -1104,11 +1164,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1104
1164
  refNameAliases: {
1105
1165
  [x: string]: string;
1106
1166
  } | undefined;
1107
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1108
- } & {
1109
- readonly lowerCaseRefNameAliases: {
1110
- [k: string]: string;
1167
+ lowerCaseRefNameAliases: {
1168
+ [x: string]: string;
1111
1169
  } | undefined;
1170
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1112
1171
  } & {
1113
1172
  getConf(arg: string): any;
1114
1173
  } & {
@@ -1131,17 +1190,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1131
1190
  getRefNameColor(refName: string): string | undefined;
1132
1191
  isValidRefName(refName: string): boolean;
1133
1192
  } & {
1134
- setLoaded({ regions, refNameAliases, cytobands, }: {
1193
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1135
1194
  regions: import("@jbrowse/core/util").Region[];
1136
1195
  refNameAliases: {
1137
1196
  [x: string]: string;
1138
1197
  };
1198
+ lowerCaseRefNameAliases: {
1199
+ [x: string]: string;
1200
+ };
1139
1201
  cytobands: import("@jbrowse/core/util").Feature[];
1140
1202
  }): void;
1141
1203
  setError(e: unknown): void;
1142
1204
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1143
1205
  setRefNameAliases(aliases: {
1144
1206
  [x: string]: string;
1207
+ }, lowerCaseAliases: {
1208
+ [x: string]: string;
1145
1209
  }): void;
1146
1210
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1147
1211
  setLoadingP(p?: Promise<void>): void;
@@ -1172,11 +1236,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1172
1236
  refNameAliases: {
1173
1237
  [x: string]: string;
1174
1238
  } | undefined;
1175
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1176
- } & {
1177
- readonly lowerCaseRefNameAliases: {
1178
- [k: string]: string;
1239
+ lowerCaseRefNameAliases: {
1240
+ [x: string]: string;
1179
1241
  } | undefined;
1242
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1180
1243
  } & {
1181
1244
  getConf(arg: string): any;
1182
1245
  } & {
@@ -1199,17 +1262,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1199
1262
  getRefNameColor(refName: string): string | undefined;
1200
1263
  isValidRefName(refName: string): boolean;
1201
1264
  } & {
1202
- setLoaded({ regions, refNameAliases, cytobands, }: {
1265
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1203
1266
  regions: import("@jbrowse/core/util").Region[];
1204
1267
  refNameAliases: {
1205
1268
  [x: string]: string;
1206
1269
  };
1270
+ lowerCaseRefNameAliases: {
1271
+ [x: string]: string;
1272
+ };
1207
1273
  cytobands: import("@jbrowse/core/util").Feature[];
1208
1274
  }): void;
1209
1275
  setError(e: unknown): void;
1210
1276
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1211
1277
  setRefNameAliases(aliases: {
1212
1278
  [x: string]: string;
1279
+ }, lowerCaseAliases: {
1280
+ [x: string]: string;
1213
1281
  }): void;
1214
1282
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1215
1283
  setLoadingP(p?: Promise<void>): void;
@@ -1238,11 +1306,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1238
1306
  refNameAliases: {
1239
1307
  [x: string]: string;
1240
1308
  } | undefined;
1241
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1242
- } & {
1243
- readonly lowerCaseRefNameAliases: {
1244
- [k: string]: string;
1309
+ lowerCaseRefNameAliases: {
1310
+ [x: string]: string;
1245
1311
  } | undefined;
1312
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1246
1313
  } & {
1247
1314
  getConf(arg: string): any;
1248
1315
  } & {
@@ -1265,17 +1332,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1265
1332
  getRefNameColor(refName: string): string | undefined;
1266
1333
  isValidRefName(refName: string): boolean;
1267
1334
  } & {
1268
- setLoaded({ regions, refNameAliases, cytobands, }: {
1335
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1269
1336
  regions: import("@jbrowse/core/util").Region[];
1270
1337
  refNameAliases: {
1271
1338
  [x: string]: string;
1272
1339
  };
1340
+ lowerCaseRefNameAliases: {
1341
+ [x: string]: string;
1342
+ };
1273
1343
  cytobands: import("@jbrowse/core/util").Feature[];
1274
1344
  }): void;
1275
1345
  setError(e: unknown): void;
1276
1346
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1277
1347
  setRefNameAliases(aliases: {
1278
1348
  [x: string]: string;
1349
+ }, lowerCaseAliases: {
1350
+ [x: string]: string;
1279
1351
  }): void;
1280
1352
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1281
1353
  setLoadingP(p?: Promise<void>): void;
@@ -1306,11 +1378,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1306
1378
  refNameAliases: {
1307
1379
  [x: string]: string;
1308
1380
  } | undefined;
1309
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1310
- } & {
1311
- readonly lowerCaseRefNameAliases: {
1312
- [k: string]: string;
1381
+ lowerCaseRefNameAliases: {
1382
+ [x: string]: string;
1313
1383
  } | undefined;
1384
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1314
1385
  } & {
1315
1386
  getConf(arg: string): any;
1316
1387
  } & {
@@ -1333,17 +1404,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1333
1404
  getRefNameColor(refName: string): string | undefined;
1334
1405
  isValidRefName(refName: string): boolean;
1335
1406
  } & {
1336
- setLoaded({ regions, refNameAliases, cytobands, }: {
1407
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1337
1408
  regions: import("@jbrowse/core/util").Region[];
1338
1409
  refNameAliases: {
1339
1410
  [x: string]: string;
1340
1411
  };
1412
+ lowerCaseRefNameAliases: {
1413
+ [x: string]: string;
1414
+ };
1341
1415
  cytobands: import("@jbrowse/core/util").Feature[];
1342
1416
  }): void;
1343
1417
  setError(e: unknown): void;
1344
1418
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1345
1419
  setRefNameAliases(aliases: {
1346
1420
  [x: string]: string;
1421
+ }, lowerCaseAliases: {
1422
+ [x: string]: string;
1347
1423
  }): void;
1348
1424
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1349
1425
  setLoadingP(p?: Promise<void>): void;
@@ -1372,11 +1448,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1372
1448
  refNameAliases: {
1373
1449
  [x: string]: string;
1374
1450
  } | undefined;
1375
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1376
- } & {
1377
- readonly lowerCaseRefNameAliases: {
1378
- [k: string]: string;
1451
+ lowerCaseRefNameAliases: {
1452
+ [x: string]: string;
1379
1453
  } | undefined;
1454
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1380
1455
  } & {
1381
1456
  getConf(arg: string): any;
1382
1457
  } & {
@@ -1399,17 +1474,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1399
1474
  getRefNameColor(refName: string): string | undefined;
1400
1475
  isValidRefName(refName: string): boolean;
1401
1476
  } & {
1402
- setLoaded({ regions, refNameAliases, cytobands, }: {
1477
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1403
1478
  regions: import("@jbrowse/core/util").Region[];
1404
1479
  refNameAliases: {
1405
1480
  [x: string]: string;
1406
1481
  };
1482
+ lowerCaseRefNameAliases: {
1483
+ [x: string]: string;
1484
+ };
1407
1485
  cytobands: import("@jbrowse/core/util").Feature[];
1408
1486
  }): void;
1409
1487
  setError(e: unknown): void;
1410
1488
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1411
1489
  setRefNameAliases(aliases: {
1412
1490
  [x: string]: string;
1491
+ }, lowerCaseAliases: {
1492
+ [x: string]: string;
1413
1493
  }): void;
1414
1494
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1415
1495
  setLoadingP(p?: Promise<void>): void;
@@ -1443,11 +1523,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1443
1523
  refNameAliases: {
1444
1524
  [x: string]: string;
1445
1525
  } | undefined;
1446
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1447
- } & {
1448
- readonly lowerCaseRefNameAliases: {
1449
- [k: string]: string;
1526
+ lowerCaseRefNameAliases: {
1527
+ [x: string]: string;
1450
1528
  } | undefined;
1529
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1451
1530
  } & {
1452
1531
  getConf(arg: string): any;
1453
1532
  } & {
@@ -1470,17 +1549,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1470
1549
  getRefNameColor(refName: string): string | undefined;
1471
1550
  isValidRefName(refName: string): boolean;
1472
1551
  } & {
1473
- setLoaded({ regions, refNameAliases, cytobands, }: {
1552
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1474
1553
  regions: import("@jbrowse/core/util").Region[];
1475
1554
  refNameAliases: {
1476
1555
  [x: string]: string;
1477
1556
  };
1557
+ lowerCaseRefNameAliases: {
1558
+ [x: string]: string;
1559
+ };
1478
1560
  cytobands: import("@jbrowse/core/util").Feature[];
1479
1561
  }): void;
1480
1562
  setError(e: unknown): void;
1481
1563
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1482
1564
  setRefNameAliases(aliases: {
1483
1565
  [x: string]: string;
1566
+ }, lowerCaseAliases: {
1567
+ [x: string]: string;
1484
1568
  }): void;
1485
1569
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1486
1570
  setLoadingP(p?: Promise<void>): void;
@@ -1509,11 +1593,10 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1509
1593
  refNameAliases: {
1510
1594
  [x: string]: string;
1511
1595
  } | undefined;
1512
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1513
- } & {
1514
- readonly lowerCaseRefNameAliases: {
1515
- [k: string]: string;
1596
+ lowerCaseRefNameAliases: {
1597
+ [x: string]: string;
1516
1598
  } | undefined;
1599
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1517
1600
  } & {
1518
1601
  getConf(arg: string): any;
1519
1602
  } & {
@@ -1536,17 +1619,22 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
1536
1619
  getRefNameColor(refName: string): string | undefined;
1537
1620
  isValidRefName(refName: string): boolean;
1538
1621
  } & {
1539
- setLoaded({ regions, refNameAliases, cytobands, }: {
1622
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1540
1623
  regions: import("@jbrowse/core/util").Region[];
1541
1624
  refNameAliases: {
1542
1625
  [x: string]: string;
1543
1626
  };
1627
+ lowerCaseRefNameAliases: {
1628
+ [x: string]: string;
1629
+ };
1544
1630
  cytobands: import("@jbrowse/core/util").Feature[];
1545
1631
  }): void;
1546
1632
  setError(e: unknown): void;
1547
1633
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1548
1634
  setRefNameAliases(aliases: {
1549
1635
  [x: string]: string;
1636
+ }, lowerCaseAliases: {
1637
+ [x: string]: string;
1550
1638
  }): void;
1551
1639
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1552
1640
  setLoadingP(p?: Promise<void>): void;