@jbrowse/product-core 2.15.0 → 2.15.2

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Files changed (11) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +63 -35
  2. package/dist/Session/MultipleViews.d.ts +204 -112
  3. package/dist/Session/SessionTracks.d.ts +198 -110
  4. package/dist/Session/Tracks.d.ts +198 -110
  5. package/dist/ui/RefNameInfoDialog.js +9 -7
  6. package/esm/RootModel/BaseRootModel.d.ts +63 -35
  7. package/esm/Session/MultipleViews.d.ts +204 -112
  8. package/esm/Session/SessionTracks.d.ts +198 -110
  9. package/esm/Session/Tracks.d.ts +198 -110
  10. package/esm/ui/RefNameInfoDialog.js +11 -9
  11. package/package.json +3 -3
package/dist/Session/Tracks.d.ts CHANGED
@@ -29,11 +29,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -56,17 +55,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -95,11 +99,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -122,17 +125,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -163,11 +171,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -190,17 +197,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -229,11 +241,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -256,17 +267,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -297,11 +313,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -324,17 +339,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -363,11 +383,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -390,17 +409,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -434,11 +458,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -461,17 +484,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -500,11 +528,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -527,17 +554,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
541
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -590,11 +622,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
594
- } & {
595
- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
625
+ lowerCaseRefNameAliases: {
626
+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
598
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  } & {
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  getConf(arg: string): any;
600
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  } & {
@@ -617,17 +648,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
617
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  getRefNameColor(refName: string): string | undefined;
618
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  isValidRefName(refName: string): boolean;
619
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  } & {
620
- setLoaded({ regions, refNameAliases, cytobands, }: {
651
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
621
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
623
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  [x: string]: string;
624
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  };
656
+ lowerCaseRefNameAliases: {
657
+ [x: string]: string;
658
+ };
625
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  cytobands: import("@jbrowse/core/util").Feature[];
626
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  }): void;
627
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
629
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  setRefNameAliases(aliases: {
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  [x: string]: string;
665
+ }, lowerCaseAliases: {
666
+ [x: string]: string;
631
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
633
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  setLoadingP(p?: Promise<void>): void;
@@ -658,11 +694,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
658
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
662
- } & {
663
- readonly lowerCaseRefNameAliases: {
664
- [k: string]: string;
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+ lowerCaseRefNameAliases: {
698
+ [x: string]: string;
665
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
666
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  } & {
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  getConf(arg: string): any;
668
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  } & {
@@ -685,17 +720,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
685
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  getRefNameColor(refName: string): string | undefined;
686
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  isValidRefName(refName: string): boolean;
687
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  } & {
688
- setLoaded({ regions, refNameAliases, cytobands, }: {
723
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
689
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
692
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  };
728
+ lowerCaseRefNameAliases: {
729
+ [x: string]: string;
730
+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
694
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  }): void;
695
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  setError(e: unknown): void;
696
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
737
+ }, lowerCaseAliases: {
738
+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
701
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  setLoadingP(p?: Promise<void>): void;
@@ -724,11 +764,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
724
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  refNameAliases: {
725
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  [x: string]: string;
726
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  } | undefined;
727
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
728
- } & {
729
- readonly lowerCaseRefNameAliases: {
730
- [k: string]: string;
767
+ lowerCaseRefNameAliases: {
768
+ [x: string]: string;
731
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  } | undefined;
770
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
732
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  } & {
733
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  getConf(arg: string): any;
734
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  } & {
@@ -751,17 +790,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
751
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  getRefNameColor(refName: string): string | undefined;
752
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  isValidRefName(refName: string): boolean;
753
792
  } & {
754
- setLoaded({ regions, refNameAliases, cytobands, }: {
793
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
755
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  regions: import("@jbrowse/core/util").Region[];
756
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  refNameAliases: {
757
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  [x: string]: string;
758
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  };
798
+ lowerCaseRefNameAliases: {
799
+ [x: string]: string;
800
+ };
759
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  cytobands: import("@jbrowse/core/util").Feature[];
760
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  }): void;
761
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  setError(e: unknown): void;
762
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
763
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  setRefNameAliases(aliases: {
764
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  [x: string]: string;
807
+ }, lowerCaseAliases: {
808
+ [x: string]: string;
765
809
  }): void;
766
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
767
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  setLoadingP(p?: Promise<void>): void;
@@ -792,11 +836,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
792
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  refNameAliases: {
793
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  [x: string]: string;
794
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  } | undefined;
795
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
796
- } & {
797
- readonly lowerCaseRefNameAliases: {
798
- [k: string]: string;
839
+ lowerCaseRefNameAliases: {
840
+ [x: string]: string;
799
841
  } | undefined;
842
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
800
843
  } & {
801
844
  getConf(arg: string): any;
802
845
  } & {
@@ -819,17 +862,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
819
862
  getRefNameColor(refName: string): string | undefined;
820
863
  isValidRefName(refName: string): boolean;
821
864
  } & {
822
- setLoaded({ regions, refNameAliases, cytobands, }: {
865
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
823
866
  regions: import("@jbrowse/core/util").Region[];
824
867
  refNameAliases: {
825
868
  [x: string]: string;
826
869
  };
870
+ lowerCaseRefNameAliases: {
871
+ [x: string]: string;
872
+ };
827
873
  cytobands: import("@jbrowse/core/util").Feature[];
828
874
  }): void;
829
875
  setError(e: unknown): void;
830
876
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
831
877
  setRefNameAliases(aliases: {
832
878
  [x: string]: string;
879
+ }, lowerCaseAliases: {
880
+ [x: string]: string;
833
881
  }): void;
834
882
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
835
883
  setLoadingP(p?: Promise<void>): void;
@@ -858,11 +906,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
858
906
  refNameAliases: {
859
907
  [x: string]: string;
860
908
  } | undefined;
861
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
862
- } & {
863
- readonly lowerCaseRefNameAliases: {
864
- [k: string]: string;
909
+ lowerCaseRefNameAliases: {
910
+ [x: string]: string;
865
911
  } | undefined;
912
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
866
913
  } & {
867
914
  getConf(arg: string): any;
868
915
  } & {
@@ -885,17 +932,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
885
932
  getRefNameColor(refName: string): string | undefined;
886
933
  isValidRefName(refName: string): boolean;
887
934
  } & {
888
- setLoaded({ regions, refNameAliases, cytobands, }: {
935
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
889
936
  regions: import("@jbrowse/core/util").Region[];
890
937
  refNameAliases: {
891
938
  [x: string]: string;
892
939
  };
940
+ lowerCaseRefNameAliases: {
941
+ [x: string]: string;
942
+ };
893
943
  cytobands: import("@jbrowse/core/util").Feature[];
894
944
  }): void;
895
945
  setError(e: unknown): void;
896
946
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
897
947
  setRefNameAliases(aliases: {
898
948
  [x: string]: string;
949
+ }, lowerCaseAliases: {
950
+ [x: string]: string;
899
951
  }): void;
900
952
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
901
953
  setLoadingP(p?: Promise<void>): void;
@@ -929,11 +981,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
929
981
  refNameAliases: {
930
982
  [x: string]: string;
931
983
  } | undefined;
932
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
933
- } & {
934
- readonly lowerCaseRefNameAliases: {
935
- [k: string]: string;
984
+ lowerCaseRefNameAliases: {
985
+ [x: string]: string;
936
986
  } | undefined;
987
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
937
988
  } & {
938
989
  getConf(arg: string): any;
939
990
  } & {
@@ -956,17 +1007,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
956
1007
  getRefNameColor(refName: string): string | undefined;
957
1008
  isValidRefName(refName: string): boolean;
958
1009
  } & {
959
- setLoaded({ regions, refNameAliases, cytobands, }: {
1010
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
960
1011
  regions: import("@jbrowse/core/util").Region[];
961
1012
  refNameAliases: {
962
1013
  [x: string]: string;
963
1014
  };
1015
+ lowerCaseRefNameAliases: {
1016
+ [x: string]: string;
1017
+ };
964
1018
  cytobands: import("@jbrowse/core/util").Feature[];
965
1019
  }): void;
966
1020
  setError(e: unknown): void;
967
1021
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
968
1022
  setRefNameAliases(aliases: {
969
1023
  [x: string]: string;
1024
+ }, lowerCaseAliases: {
1025
+ [x: string]: string;
970
1026
  }): void;
971
1027
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
972
1028
  setLoadingP(p?: Promise<void>): void;
@@ -995,11 +1051,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
995
1051
  refNameAliases: {
996
1052
  [x: string]: string;
997
1053
  } | undefined;
998
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
999
- } & {
1000
- readonly lowerCaseRefNameAliases: {
1001
- [k: string]: string;
1054
+ lowerCaseRefNameAliases: {
1055
+ [x: string]: string;
1002
1056
  } | undefined;
1057
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1003
1058
  } & {
1004
1059
  getConf(arg: string): any;
1005
1060
  } & {
@@ -1022,17 +1077,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1022
1077
  getRefNameColor(refName: string): string | undefined;
1023
1078
  isValidRefName(refName: string): boolean;
1024
1079
  } & {
1025
- setLoaded({ regions, refNameAliases, cytobands, }: {
1080
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1026
1081
  regions: import("@jbrowse/core/util").Region[];
1027
1082
  refNameAliases: {
1028
1083
  [x: string]: string;
1029
1084
  };
1085
+ lowerCaseRefNameAliases: {
1086
+ [x: string]: string;
1087
+ };
1030
1088
  cytobands: import("@jbrowse/core/util").Feature[];
1031
1089
  }): void;
1032
1090
  setError(e: unknown): void;
1033
1091
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1034
1092
  setRefNameAliases(aliases: {
1035
1093
  [x: string]: string;
1094
+ }, lowerCaseAliases: {
1095
+ [x: string]: string;
1036
1096
  }): void;
1037
1097
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1038
1098
  setLoadingP(p?: Promise<void>): void;
@@ -1102,11 +1162,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1102
1162
  refNameAliases: {
1103
1163
  [x: string]: string;
1104
1164
  } | undefined;
1105
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1106
- } & {
1107
- readonly lowerCaseRefNameAliases: {
1108
- [k: string]: string;
1165
+ lowerCaseRefNameAliases: {
1166
+ [x: string]: string;
1109
1167
  } | undefined;
1168
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1110
1169
  } & {
1111
1170
  getConf(arg: string): any;
1112
1171
  } & {
@@ -1129,17 +1188,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1129
1188
  getRefNameColor(refName: string): string | undefined;
1130
1189
  isValidRefName(refName: string): boolean;
1131
1190
  } & {
1132
- setLoaded({ regions, refNameAliases, cytobands, }: {
1191
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1133
1192
  regions: import("@jbrowse/core/util").Region[];
1134
1193
  refNameAliases: {
1135
1194
  [x: string]: string;
1136
1195
  };
1196
+ lowerCaseRefNameAliases: {
1197
+ [x: string]: string;
1198
+ };
1137
1199
  cytobands: import("@jbrowse/core/util").Feature[];
1138
1200
  }): void;
1139
1201
  setError(e: unknown): void;
1140
1202
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1141
1203
  setRefNameAliases(aliases: {
1142
1204
  [x: string]: string;
1205
+ }, lowerCaseAliases: {
1206
+ [x: string]: string;
1143
1207
  }): void;
1144
1208
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1145
1209
  setLoadingP(p?: Promise<void>): void;
@@ -1170,11 +1234,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1170
1234
  refNameAliases: {
1171
1235
  [x: string]: string;
1172
1236
  } | undefined;
1173
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1174
- } & {
1175
- readonly lowerCaseRefNameAliases: {
1176
- [k: string]: string;
1237
+ lowerCaseRefNameAliases: {
1238
+ [x: string]: string;
1177
1239
  } | undefined;
1240
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1178
1241
  } & {
1179
1242
  getConf(arg: string): any;
1180
1243
  } & {
@@ -1197,17 +1260,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1197
1260
  getRefNameColor(refName: string): string | undefined;
1198
1261
  isValidRefName(refName: string): boolean;
1199
1262
  } & {
1200
- setLoaded({ regions, refNameAliases, cytobands, }: {
1263
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1201
1264
  regions: import("@jbrowse/core/util").Region[];
1202
1265
  refNameAliases: {
1203
1266
  [x: string]: string;
1204
1267
  };
1268
+ lowerCaseRefNameAliases: {
1269
+ [x: string]: string;
1270
+ };
1205
1271
  cytobands: import("@jbrowse/core/util").Feature[];
1206
1272
  }): void;
1207
1273
  setError(e: unknown): void;
1208
1274
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1209
1275
  setRefNameAliases(aliases: {
1210
1276
  [x: string]: string;
1277
+ }, lowerCaseAliases: {
1278
+ [x: string]: string;
1211
1279
  }): void;
1212
1280
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1213
1281
  setLoadingP(p?: Promise<void>): void;
@@ -1236,11 +1304,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1236
1304
  refNameAliases: {
1237
1305
  [x: string]: string;
1238
1306
  } | undefined;
1239
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1240
- } & {
1241
- readonly lowerCaseRefNameAliases: {
1242
- [k: string]: string;
1307
+ lowerCaseRefNameAliases: {
1308
+ [x: string]: string;
1243
1309
  } | undefined;
1310
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1244
1311
  } & {
1245
1312
  getConf(arg: string): any;
1246
1313
  } & {
@@ -1263,17 +1330,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1263
1330
  getRefNameColor(refName: string): string | undefined;
1264
1331
  isValidRefName(refName: string): boolean;
1265
1332
  } & {
1266
- setLoaded({ regions, refNameAliases, cytobands, }: {
1333
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1267
1334
  regions: import("@jbrowse/core/util").Region[];
1268
1335
  refNameAliases: {
1269
1336
  [x: string]: string;
1270
1337
  };
1338
+ lowerCaseRefNameAliases: {
1339
+ [x: string]: string;
1340
+ };
1271
1341
  cytobands: import("@jbrowse/core/util").Feature[];
1272
1342
  }): void;
1273
1343
  setError(e: unknown): void;
1274
1344
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1275
1345
  setRefNameAliases(aliases: {
1276
1346
  [x: string]: string;
1347
+ }, lowerCaseAliases: {
1348
+ [x: string]: string;
1277
1349
  }): void;
1278
1350
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1279
1351
  setLoadingP(p?: Promise<void>): void;
@@ -1304,11 +1376,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1304
1376
  refNameAliases: {
1305
1377
  [x: string]: string;
1306
1378
  } | undefined;
1307
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1308
- } & {
1309
- readonly lowerCaseRefNameAliases: {
1310
- [k: string]: string;
1379
+ lowerCaseRefNameAliases: {
1380
+ [x: string]: string;
1311
1381
  } | undefined;
1382
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1312
1383
  } & {
1313
1384
  getConf(arg: string): any;
1314
1385
  } & {
@@ -1331,17 +1402,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1331
1402
  getRefNameColor(refName: string): string | undefined;
1332
1403
  isValidRefName(refName: string): boolean;
1333
1404
  } & {
1334
- setLoaded({ regions, refNameAliases, cytobands, }: {
1405
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1335
1406
  regions: import("@jbrowse/core/util").Region[];
1336
1407
  refNameAliases: {
1337
1408
  [x: string]: string;
1338
1409
  };
1410
+ lowerCaseRefNameAliases: {
1411
+ [x: string]: string;
1412
+ };
1339
1413
  cytobands: import("@jbrowse/core/util").Feature[];
1340
1414
  }): void;
1341
1415
  setError(e: unknown): void;
1342
1416
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1343
1417
  setRefNameAliases(aliases: {
1344
1418
  [x: string]: string;
1419
+ }, lowerCaseAliases: {
1420
+ [x: string]: string;
1345
1421
  }): void;
1346
1422
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1347
1423
  setLoadingP(p?: Promise<void>): void;
@@ -1370,11 +1446,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1370
1446
  refNameAliases: {
1371
1447
  [x: string]: string;
1372
1448
  } | undefined;
1373
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1374
- } & {
1375
- readonly lowerCaseRefNameAliases: {
1376
- [k: string]: string;
1449
+ lowerCaseRefNameAliases: {
1450
+ [x: string]: string;
1377
1451
  } | undefined;
1452
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1378
1453
  } & {
1379
1454
  getConf(arg: string): any;
1380
1455
  } & {
@@ -1397,17 +1472,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1397
1472
  getRefNameColor(refName: string): string | undefined;
1398
1473
  isValidRefName(refName: string): boolean;
1399
1474
  } & {
1400
- setLoaded({ regions, refNameAliases, cytobands, }: {
1475
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1401
1476
  regions: import("@jbrowse/core/util").Region[];
1402
1477
  refNameAliases: {
1403
1478
  [x: string]: string;
1404
1479
  };
1480
+ lowerCaseRefNameAliases: {
1481
+ [x: string]: string;
1482
+ };
1405
1483
  cytobands: import("@jbrowse/core/util").Feature[];
1406
1484
  }): void;
1407
1485
  setError(e: unknown): void;
1408
1486
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1409
1487
  setRefNameAliases(aliases: {
1410
1488
  [x: string]: string;
1489
+ }, lowerCaseAliases: {
1490
+ [x: string]: string;
1411
1491
  }): void;
1412
1492
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1413
1493
  setLoadingP(p?: Promise<void>): void;
@@ -1441,11 +1521,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1441
1521
  refNameAliases: {
1442
1522
  [x: string]: string;
1443
1523
  } | undefined;
1444
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1445
- } & {
1446
- readonly lowerCaseRefNameAliases: {
1447
- [k: string]: string;
1524
+ lowerCaseRefNameAliases: {
1525
+ [x: string]: string;
1448
1526
  } | undefined;
1527
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1449
1528
  } & {
1450
1529
  getConf(arg: string): any;
1451
1530
  } & {
@@ -1468,17 +1547,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1468
1547
  getRefNameColor(refName: string): string | undefined;
1469
1548
  isValidRefName(refName: string): boolean;
1470
1549
  } & {
1471
- setLoaded({ regions, refNameAliases, cytobands, }: {
1550
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1472
1551
  regions: import("@jbrowse/core/util").Region[];
1473
1552
  refNameAliases: {
1474
1553
  [x: string]: string;
1475
1554
  };
1555
+ lowerCaseRefNameAliases: {
1556
+ [x: string]: string;
1557
+ };
1476
1558
  cytobands: import("@jbrowse/core/util").Feature[];
1477
1559
  }): void;
1478
1560
  setError(e: unknown): void;
1479
1561
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1480
1562
  setRefNameAliases(aliases: {
1481
1563
  [x: string]: string;
1564
+ }, lowerCaseAliases: {
1565
+ [x: string]: string;
1482
1566
  }): void;
1483
1567
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1484
1568
  setLoadingP(p?: Promise<void>): void;
@@ -1507,11 +1591,10 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1507
1591
  refNameAliases: {
1508
1592
  [x: string]: string;
1509
1593
  } | undefined;
1510
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1511
- } & {
1512
- readonly lowerCaseRefNameAliases: {
1513
- [k: string]: string;
1594
+ lowerCaseRefNameAliases: {
1595
+ [x: string]: string;
1514
1596
  } | undefined;
1597
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1515
1598
  } & {
1516
1599
  getConf(arg: string): any;
1517
1600
  } & {
@@ -1534,17 +1617,22 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1534
1617
  getRefNameColor(refName: string): string | undefined;
1535
1618
  isValidRefName(refName: string): boolean;
1536
1619
  } & {
1537
- setLoaded({ regions, refNameAliases, cytobands, }: {
1620
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
1538
1621
  regions: import("@jbrowse/core/util").Region[];
1539
1622
  refNameAliases: {
1540
1623
  [x: string]: string;
1541
1624
  };
1625
+ lowerCaseRefNameAliases: {
1626
+ [x: string]: string;
1627
+ };
1542
1628
  cytobands: import("@jbrowse/core/util").Feature[];
1543
1629
  }): void;
1544
1630
  setError(e: unknown): void;
1545
1631
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1546
1632
  setRefNameAliases(aliases: {
1547
1633
  [x: string]: string;
1634
+ }, lowerCaseAliases: {
1635
+ [x: string]: string;
1548
1636
  }): void;
1549
1637
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1550
1638
  setLoadingP(p?: Promise<void>): void;