@jbrowse/plugin-wiggle 2.4.1 → 2.5.0

package/esm/WiggleRPC/rpcMethods.d.ts

@@ -1,47 +1,3 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { Region } from '@jbrowse/core/util';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { FeatureStats } from '@jbrowse/core/util/stats';
-export declare class WiggleGetGlobalStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        headers?: Record<string, string>;
-        sessionId: string;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class WiggleGetMultiRegionStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class MultiWiggleGetSources extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<any>;
-}
+export * from './MultiWiggleGetSources';
+export * from './WiggleGetMultiRegionQuantitativeStats';
+export * from './WiggleGetGlobalQuantitativeStats';

package/esm/WiggleRPC/rpcMethods.js

@@ -1,112 +1,4 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
-import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import { renameRegionsIfNeeded } from '@jbrowse/core/util';
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-export class WiggleGetGlobalStats extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetGlobalStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getGlobalStats(deserializedArgs);
-    }
-}
-export class WiggleGetMultiRegionStats extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetMultiRegionStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        if (dataAdapter instanceof BaseFeatureDataAdapter) {
-            return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
-        }
-        throw new Error('Data adapter not found');
-    }
-}
-export class MultiWiggleGetSources extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'MultiWiggleGetSources';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getSources(regions, deserializedArgs);
-    }
-}
+export * from './MultiWiggleGetSources';
+export * from './WiggleGetMultiRegionQuantitativeStats';
+export * from './WiggleGetGlobalQuantitativeStats';
 //# sourceMappingURL=rpcMethods.js.map

package/esm/WiggleRPC/rpcMethods.js.map

@@ -1 +1 @@
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+{"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":"AAAA,cAAc,yBAAyB,CAAA;AACvC,cAAc,yCAAyC,CAAA;AACvD,cAAc,oCAAoC,CAAA"}

package/esm/WiggleRendering.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {

package/esm/XYPlotRenderer/configSchema.d.ts

@@ -1,2 +1,66 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/esm/configSchema.d.ts

@@ -1,2 +1,52 @@
-declare const WiggleRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default WiggleRenderer;

package/esm/index.d.ts

@@ -108,7 +108,33 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
                 userBpPerPxLimit: number | undefined;
                 userByteSizeLimit: number | undefined;
-                configuration: any;
+                configuration: {
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: unknown): any;
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
                 selectedRendering: string;
                 resolution: number;
                 fill: boolean | undefined;
@@ -186,8 +212,8 @@ export default class WigglePlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -200,35 +226,32 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
                 readonly currentFeatureScreenDensity: number;
                 readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
+                readonly featureDensityStatsReady: boolean;
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 reload(): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
             } & {
@@ -236,18 +259,13 @@ export default class WigglePlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -262,7 +280,7 @@ export default class WigglePlugin extends Plugin {
                 } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats(stats: {
+                updateQuantitativeStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -408,9 +426,32 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             } & {
                 type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
-                configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+                configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
                 fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
@@ -485,8 +526,8 @@ export default class WigglePlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -499,35 +540,32 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
                 readonly currentFeatureScreenDensity: number;
                 readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
+                readonly featureDensityStatsReady: boolean;
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 reload(): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
             } & {
@@ -535,18 +573,13 @@ export default class WigglePlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -561,7 +594,7 @@ export default class WigglePlugin extends Plugin {
                 } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats(stats: {
+                updateQuantitativeStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -709,9 +742,33 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
                 type: string;
                 id: string;
+                configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
                 rpcDriverName: string | undefined;
                 heightPreConfig: number | undefined;
                 userBpPerPxLimit: number | undefined;
@@ -732,7 +789,59 @@ export default class WigglePlugin extends Plugin {
         XYPlotRenderer: typeof XYPlotRenderer;
         WiggleBaseRenderer: typeof WiggleBaseRenderer;
         linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
-        xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        xyPlotRendererConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            filled: {
+                type: string;
+                defaultValue: boolean;
+            };
+            displayCrossHatches: {
+                type: string;
+                description: string;
+                defaultValue: boolean;
+            };
+            summaryScoreMode: {
+                type: string;
+                model: import("mobx-state-tree").ISimpleType<string>;
+                description: string;
+                defaultValue: string;
+            };
+            minSize: {
+                type: string;
+                defaultValue: number;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            color: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            posColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            negColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            clipColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            bicolorPivot: {
+                type: string;
+                model: import("mobx-state-tree").ISimpleType<string>;
+                description: string;
+                defaultValue: string;
+            };
+            bicolorPivotValue: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
         utils: typeof utils;
     };
 }

package/esm/index.js

@@ -19,7 +19,7 @@ import MultiRowLineRendererF from './MultiRowLineRenderer';
 import CreateMultiWiggleExtensionF from './CreateMultiWiggleExtension';
 import MultiWiggleAddTrackWidgetF from './MultiWiggleAddTrackWidget';
 import * as utils from './util';
-import { WiggleGetGlobalStats, WiggleGetMultiRegionStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
+import { WiggleGetGlobalQuantitativeStats, WiggleGetMultiRegionQuantitativeStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
 import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
 import { ReactComponent as XYPlotRendererReactComponent, configSchema as xyPlotRendererConfigSchema, XYPlotRenderer, } from './XYPlotRenderer';
 export default class WigglePlugin extends Plugin {
@@ -79,8 +79,8 @@ export default class WigglePlugin extends Plugin {
                 return trackTypeGuesser(adapterName);
             };
         });
-        pm.addRpcMethod(() => new WiggleGetGlobalStats(pm));
-        pm.addRpcMethod(() => new WiggleGetMultiRegionStats(pm));
+        pm.addRpcMethod(() => new WiggleGetGlobalQuantitativeStats(pm));
+        pm.addRpcMethod(() => new WiggleGetMultiRegionQuantitativeStats(pm));
         pm.addRpcMethod(() => new MultiWiggleGetSources(pm));
     }
 }