@jbrowse/plugin-wiggle 2.4.1 → 2.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (129) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  2. package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.d.ts +20 -1
  5. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
  6. package/dist/DensityRenderer/configSchema.d.ts +33 -1
  7. package/dist/LinePlotRenderer/configSchema.d.ts +44 -1
  8. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  9. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  10. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
  11. package/dist/LinearWiggleDisplay/models/model.d.ts +93 -58
  12. package/dist/LinearWiggleDisplay/models/model.js +8 -25
  13. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  14. package/dist/MultiDensityRenderer/configSchema.d.ts +33 -1
  15. package/dist/MultiLineRenderer/configSchema.d.ts +51 -1
  16. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
  17. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  18. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
  19. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  20. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  21. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
  22. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +62 -23
  23. package/dist/MultiLinearWiggleDisplay/models/model.js +3 -19
  24. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  25. package/dist/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  26. package/dist/MultiRowLineRenderer/configSchema.d.ts +51 -1
  27. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  28. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  29. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
  30. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  31. package/dist/MultiWiggleAdapter/configSchema.d.ts +18 -1
  32. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
  33. package/dist/MultiWiggleRendering.d.ts +0 -1
  34. package/dist/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  35. package/dist/QuantitativeTrack/configSchema.d.ts +73 -1
  36. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  37. package/dist/WiggleRPC/MultiWiggleGetSources.js +51 -0
  38. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  39. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  40. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +37 -0
  41. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  42. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  43. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +54 -0
  44. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  45. package/dist/WiggleRPC/rpcMethods.d.ts +3 -47
  46. package/dist/WiggleRPC/rpcMethods.js +16 -117
  47. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  48. package/dist/WiggleRendering.d.ts +0 -1
  49. package/dist/XYPlotRenderer/configSchema.d.ts +65 -1
  50. package/dist/configSchema.d.ts +51 -1
  51. package/dist/index.d.ts +156 -47
  52. package/dist/index.js +2 -2
  53. package/dist/index.js.map +1 -1
  54. package/dist/shared/SetMinMaxDialog.d.ts +0 -1
  55. package/dist/shared/YScaleBar.d.ts +0 -1
  56. package/dist/util.d.ts +9 -6
  57. package/dist/util.js +13 -12
  58. package/dist/util.js.map +1 -1
  59. package/esm/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  60. package/esm/BigWigAdapter/BigWigAdapter.js +4 -3
  61. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  62. package/esm/BigWigAdapter/configSchema.d.ts +20 -1
  63. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
  64. package/esm/DensityRenderer/configSchema.d.ts +33 -1
  65. package/esm/LinePlotRenderer/configSchema.d.ts +44 -1
  66. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  67. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  68. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
  69. package/esm/LinearWiggleDisplay/models/model.d.ts +93 -58
  70. package/esm/LinearWiggleDisplay/models/model.js +10 -27
  71. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  72. package/esm/MultiDensityRenderer/configSchema.d.ts +33 -1
  73. package/esm/MultiLineRenderer/configSchema.d.ts +51 -1
  74. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
  75. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  76. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
  77. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  78. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  79. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
  80. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +62 -23
  81. package/esm/MultiLinearWiggleDisplay/models/model.js +4 -20
  82. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  83. package/esm/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  84. package/esm/MultiRowLineRenderer/configSchema.d.ts +51 -1
  85. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  86. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  87. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +3 -2
  88. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  89. package/esm/MultiWiggleAdapter/configSchema.d.ts +18 -1
  90. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
  91. package/esm/MultiWiggleRendering.d.ts +0 -1
  92. package/esm/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  93. package/esm/QuantitativeTrack/configSchema.d.ts +73 -1
  94. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  95. package/esm/WiggleRPC/MultiWiggleGetSources.js +44 -0
  96. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  97. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  98. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +30 -0
  99. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  100. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  101. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +47 -0
  102. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  103. package/esm/WiggleRPC/rpcMethods.d.ts +3 -47
  104. package/esm/WiggleRPC/rpcMethods.js +3 -111
  105. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  106. package/esm/WiggleRendering.d.ts +0 -1
  107. package/esm/XYPlotRenderer/configSchema.d.ts +65 -1
  108. package/esm/configSchema.d.ts +51 -1
  109. package/esm/index.d.ts +156 -47
  110. package/esm/index.js +3 -3
  111. package/esm/index.js.map +1 -1
  112. package/esm/shared/SetMinMaxDialog.d.ts +0 -1
  113. package/esm/shared/YScaleBar.d.ts +0 -1
  114. package/esm/util.d.ts +9 -6
  115. package/esm/util.js +10 -9
  116. package/esm/util.js.map +1 -1
  117. package/package.json +3 -3
  118. package/src/BigWigAdapter/BigWigAdapter.test.ts +8 -3
  119. package/src/BigWigAdapter/BigWigAdapter.ts +6 -3
  120. package/src/LinearWiggleDisplay/models/model.tsx +11 -29
  121. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +53 -50
  122. package/src/MultiLinearWiggleDisplay/models/model.tsx +4 -20
  123. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +1 -1
  124. package/src/WiggleRPC/MultiWiggleGetSources.ts +68 -0
  125. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +44 -0
  126. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +73 -0
  127. package/src/WiggleRPC/rpcMethods.ts +3 -170
  128. package/src/index.ts +4 -4
  129. package/src/util.ts +24 -17
@@ -1,3 +1,75 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
+ name: {
4
+ description: string;
5
+ type: string;
6
+ defaultValue: string;
7
+ };
8
+ assemblyNames: {
9
+ description: string;
10
+ type: string;
11
+ defaultValue: string[];
12
+ };
13
+ description: {
14
+ description: string;
15
+ type: string;
16
+ defaultValue: string;
17
+ };
18
+ category: {
19
+ description: string;
20
+ type: string;
21
+ defaultValue: never[];
22
+ };
23
+ metadata: {
24
+ type: string;
25
+ description: string;
26
+ defaultValue: {};
27
+ };
28
+ adapter: import("mobx-state-tree").IAnyModelType;
29
+ textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
30
+ indexingAttributes: {
31
+ type: string;
32
+ description: string;
33
+ defaultValue: string[];
34
+ };
35
+ indexingFeatureTypesToExclude: {
36
+ type: string;
37
+ description: string;
38
+ defaultValue: string[];
39
+ };
40
+ textSearchAdapter: import("mobx-state-tree").IAnyModelType;
41
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
42
+ displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
43
+ formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
44
+ feature: {
45
+ type: string;
46
+ description: string;
47
+ defaultValue: {};
48
+ contextVariable: string[];
49
+ };
50
+ subfeatures: {
51
+ type: string;
52
+ description: string;
53
+ defaultValue: {};
54
+ contextVariable: string[];
55
+ };
56
+ depth: {
57
+ type: string;
58
+ defaultValue: number;
59
+ description: string;
60
+ };
61
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
62
+ formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
63
+ config: {
64
+ type: string;
65
+ description: string;
66
+ defaultValue: {};
67
+ contextVariable: string[];
68
+ };
69
+ hideUris: {
70
+ type: string;
71
+ defaultValue: boolean;
72
+ };
73
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
74
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
3
75
  export default configSchema;
@@ -1,2 +1,52 @@
1
- declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ /**
3
+ * #slot
4
+ */
5
+ displayCrossHatches: {
6
+ type: string;
7
+ description: string;
8
+ defaultValue: boolean;
9
+ };
10
+ /**
11
+ * #slot
12
+ */
13
+ summaryScoreMode: {
14
+ type: string;
15
+ model: import("mobx-state-tree").ISimpleType<string>;
16
+ description: string;
17
+ defaultValue: string;
18
+ };
19
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
20
+ color: {
21
+ type: string;
22
+ description: string;
23
+ defaultValue: string;
24
+ };
25
+ posColor: {
26
+ type: string;
27
+ description: string;
28
+ defaultValue: string;
29
+ };
30
+ negColor: {
31
+ type: string;
32
+ description: string;
33
+ defaultValue: string;
34
+ };
35
+ clipColor: {
36
+ type: string;
37
+ description: string;
38
+ defaultValue: string;
39
+ };
40
+ bicolorPivot: {
41
+ type: string;
42
+ model: import("mobx-state-tree").ISimpleType<string>;
43
+ description: string;
44
+ defaultValue: string;
45
+ };
46
+ bicolorPivotValue: {
47
+ type: string;
48
+ defaultValue: number;
49
+ description: string;
50
+ };
51
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
2
52
  export default configSchema;
@@ -1,2 +1,69 @@
1
- declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ /**
3
+ * #slot
4
+ */
5
+ filled: {
6
+ type: string;
7
+ defaultValue: boolean;
8
+ };
9
+ /**
10
+ * #slot
11
+ */
12
+ displayCrossHatches: {
13
+ type: string;
14
+ description: string;
15
+ defaultValue: boolean;
16
+ };
17
+ /**
18
+ * #slot
19
+ */
20
+ summaryScoreMode: {
21
+ type: string;
22
+ model: import("mobx-state-tree").ISimpleType<string>;
23
+ description: string;
24
+ defaultValue: string;
25
+ };
26
+ /**
27
+ * #slot
28
+ */
29
+ minSize: {
30
+ type: string;
31
+ defaultValue: number;
32
+ };
33
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
34
+ color: {
35
+ type: string;
36
+ description: string;
37
+ defaultValue: string;
38
+ };
39
+ posColor: {
40
+ type: string;
41
+ description: string;
42
+ /**
43
+ * #slot
44
+ */
45
+ defaultValue: string;
46
+ };
47
+ negColor: {
48
+ type: string;
49
+ description: string;
50
+ defaultValue: string;
51
+ };
52
+ clipColor: {
53
+ type: string;
54
+ description: string;
55
+ defaultValue: string;
56
+ };
57
+ bicolorPivot: {
58
+ type: string;
59
+ model: import("mobx-state-tree").ISimpleType<string>;
60
+ description: string;
61
+ defaultValue: string;
62
+ };
63
+ bicolorPivotValue: {
64
+ type: string;
65
+ defaultValue: number;
66
+ description: string;
67
+ };
68
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
2
69
  export default configSchema;
@@ -18,7 +18,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
18
18
  scoreMax: number;
19
19
  }>;
20
20
  getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
21
- estimateRegionsStats(_regions: Region[]): Promise<{
21
+ getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
22
22
  featureDensity: number;
23
23
  }>;
24
24
  getSources(): Promise<{
@@ -7,7 +7,7 @@ function getFilename(uri) {
7
7
  const filename = uri.slice(uri.lastIndexOf('/') + 1);
8
8
  return filename.slice(0, filename.lastIndexOf('.'));
9
9
  }
10
- export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
10
+ class MultiWiggleAdapter extends BaseFeatureDataAdapter {
11
11
  async getAdapters() {
12
12
  const getSubAdapter = this.getSubAdapter;
13
13
  if (!getSubAdapter) {
@@ -66,7 +66,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
66
66
  }, opts.signal);
67
67
  }
68
68
  // always render bigwig instead of calculating a feature density for it
69
- async estimateRegionsStats(_regions) {
69
+ async getMultiRegionFeatureDensityStats(_regions) {
70
70
  return { featureDensity: 0 };
71
71
  }
72
72
  // in another adapter type, this could be dynamic depending on region or
@@ -86,4 +86,5 @@ MultiWiggleAdapter.capabilities = [
86
86
  'hasLocalStats',
87
87
  'hasGlobalStats',
88
88
  ];
89
+ export default MultiWiggleAdapter;
89
90
  //# sourceMappingURL=MultiWiggleAdapter.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,GAAG,EAAE,GAAG,EAAE,MAAM,oBAAoB,CAAA;AACrE,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAQD,MAAM,CAAC,OAAO,OAAO,kBAAmB,SAAQ,sBAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,mBAAmB;QACnB,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,KAAK,CACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,GAAG,CAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,aAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAjGjB,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
1
+ {"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,GAAG,EAAE,GAAG,EAAE,MAAM,oBAAoB,CAAA;AACrE,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAQD,MAAqB,kBAAmB,SAAQ,sBAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,mBAAmB;QACnB,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,KAAK,CACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,GAAG,CAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,aAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,iCAAiC,CAAC,QAAkB;QACxD,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAjGjB,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA;eALkB,kBAAkB"}
@@ -1,2 +1,19 @@
1
- declare const MultiWiggleAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ /**
3
+ * #slot
4
+ */
5
+ subadapters: {
6
+ type: string;
7
+ defaultValue: never[];
8
+ description: string;
9
+ };
10
+ /**
11
+ * #slot
12
+ */
13
+ bigWigs: {
14
+ type: string;
15
+ description: string;
16
+ defaultValue: never[];
17
+ };
18
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
2
19
  export default MultiWiggleAdapter;
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import { AddTrackModel } from '@jbrowse/plugin-data-management';
3
2
  export default function MultiWiggleWidget({ model }: {
4
3
  model: AddTrackModel;
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import { Region } from '@jbrowse/core/util/types';
3
2
  import { Feature } from '@jbrowse/core/util';
4
3
  import { Source } from './util';
@@ -1,2 +1,66 @@
1
- declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ /**
3
+ * #slot
4
+ */
5
+ filled: {
6
+ type: string;
7
+ defaultValue: boolean;
8
+ };
9
+ /**
10
+ * #slot
11
+ */
12
+ displayCrossHatches: {
13
+ type: string;
14
+ description: string;
15
+ defaultValue: boolean;
16
+ };
17
+ /**
18
+ * #slot
19
+ */
20
+ summaryScoreMode: {
21
+ type: string;
22
+ model: import("mobx-state-tree").ISimpleType<string>;
23
+ description: string;
24
+ defaultValue: string;
25
+ };
26
+ /**
27
+ * #slot
28
+ */
29
+ minSize: {
30
+ type: string;
31
+ defaultValue: number;
32
+ };
33
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
34
+ color: {
35
+ type: string;
36
+ description: string;
37
+ defaultValue: string;
38
+ };
39
+ posColor: {
40
+ type: string;
41
+ description: string;
42
+ defaultValue: string;
43
+ };
44
+ negColor: {
45
+ type: string;
46
+ description: string;
47
+ defaultValue: string;
48
+ };
49
+ clipColor: {
50
+ type: string;
51
+ description: string;
52
+ defaultValue: string;
53
+ };
54
+ bicolorPivot: {
55
+ type: string;
56
+ model: import("mobx-state-tree").ISimpleType<string>;
57
+ description: string;
58
+ defaultValue: string;
59
+ };
60
+ bicolorPivotValue: {
61
+ type: string;
62
+ defaultValue: number;
63
+ description: string;
64
+ };
65
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
2
66
  export default configSchema;
@@ -1,3 +1,75 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
+ name: {
4
+ description: string;
5
+ type: string;
6
+ defaultValue: string;
7
+ };
8
+ assemblyNames: {
9
+ description: string;
10
+ type: string;
11
+ defaultValue: string[];
12
+ };
13
+ description: {
14
+ description: string;
15
+ type: string;
16
+ defaultValue: string;
17
+ };
18
+ category: {
19
+ description: string;
20
+ type: string;
21
+ defaultValue: never[];
22
+ };
23
+ metadata: {
24
+ type: string;
25
+ description: string;
26
+ defaultValue: {};
27
+ };
28
+ adapter: import("mobx-state-tree").IAnyModelType;
29
+ textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
30
+ indexingAttributes: {
31
+ type: string;
32
+ description: string;
33
+ defaultValue: string[];
34
+ };
35
+ indexingFeatureTypesToExclude: {
36
+ type: string;
37
+ description: string;
38
+ defaultValue: string[];
39
+ };
40
+ textSearchAdapter: import("mobx-state-tree").IAnyModelType;
41
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
42
+ displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
43
+ formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
44
+ feature: {
45
+ type: string;
46
+ description: string;
47
+ defaultValue: {};
48
+ contextVariable: string[];
49
+ };
50
+ subfeatures: {
51
+ type: string;
52
+ description: string;
53
+ defaultValue: {};
54
+ contextVariable: string[];
55
+ };
56
+ depth: {
57
+ type: string;
58
+ defaultValue: number;
59
+ description: string;
60
+ };
61
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
62
+ formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
63
+ config: {
64
+ type: string;
65
+ description: string;
66
+ defaultValue: {};
67
+ contextVariable: string[];
68
+ };
69
+ hideUris: {
70
+ type: string;
71
+ defaultValue: boolean;
72
+ };
73
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
74
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
3
75
  export default configSchemaFactory;
@@ -0,0 +1,21 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
3
+ import { Region } from '@jbrowse/core/util';
4
+ import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
5
+ import { AnyConfigurationModel } from '@jbrowse/core/configuration';
6
+ export declare class MultiWiggleGetSources extends RpcMethodType {
7
+ name: string;
8
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
9
+ serializeArguments(args: RenderArgs & {
10
+ signal?: AbortSignal;
11
+ statusCallback?: (arg: string) => void;
12
+ }, rpcDriverClassName: string): Promise<{}>;
13
+ execute(args: {
14
+ adapterConfig: AnyConfigurationModel;
15
+ signal?: RemoteAbortSignal;
16
+ sessionId: string;
17
+ headers?: Record<string, string>;
18
+ regions: Region[];
19
+ bpPerPx: number;
20
+ }, rpcDriverClassName: string): Promise<any>;
21
+ }
@@ -0,0 +1,44 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
3
+ import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
4
+ import { renameRegionsIfNeeded } from '@jbrowse/core/util';
5
+ export class MultiWiggleGetSources extends RpcMethodType {
6
+ constructor() {
7
+ super(...arguments);
8
+ this.name = 'MultiWiggleGetSources';
9
+ }
10
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
11
+ async deserializeArguments(args, rpcDriverClassName) {
12
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
13
+ return {
14
+ ...l,
15
+ filters: args.filters
16
+ ? new SerializableFilterChain({
17
+ filters: args.filters,
18
+ })
19
+ : undefined,
20
+ };
21
+ }
22
+ async serializeArguments(args, rpcDriverClassName) {
23
+ var _a, _b, _c;
24
+ const pm = this.pluginManager;
25
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
26
+ if (!assemblyManager) {
27
+ return args;
28
+ }
29
+ const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
30
+ ...args,
31
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
32
+ });
33
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
34
+ }
35
+ async execute(args, rpcDriverClassName) {
36
+ const pm = this.pluginManager;
37
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
38
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
39
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
40
+ // @ts-expect-error
41
+ return dataAdapter.getSources(regions, deserializedArgs);
42
+ }
43
+ }
44
+ //# sourceMappingURL=MultiWiggleGetSources.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"MultiWiggleGetSources.js","sourceRoot":"","sources":["../../src/WiggleRPC/MultiWiggleGetSources.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAIlE,MAAM,OAAO,qBAAsB,SAAQ,aAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IA0DhC,CAAC;IAxDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}
@@ -0,0 +1,14 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
3
+ import { QuantitativeStats } from '@jbrowse/core/util/stats';
4
+ import { AnyConfigurationModel } from '@jbrowse/core/configuration';
5
+ export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
6
+ name: string;
7
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
8
+ execute(args: {
9
+ adapterConfig: AnyConfigurationModel;
10
+ signal?: RemoteAbortSignal;
11
+ headers?: Record<string, string>;
12
+ sessionId: string;
13
+ }, rpcDriverClassName: string): Promise<QuantitativeStats>;
14
+ }
@@ -0,0 +1,30 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
3
+ import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
4
+ export class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
5
+ constructor() {
6
+ super(...arguments);
7
+ this.name = 'WiggleGetGlobalQuantitativeStats';
8
+ }
9
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
10
+ async deserializeArguments(args, rpcDriverClassName) {
11
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
12
+ return {
13
+ ...l,
14
+ filters: args.filters
15
+ ? new SerializableFilterChain({
16
+ filters: args.filters,
17
+ })
18
+ : undefined,
19
+ };
20
+ }
21
+ async execute(args, rpcDriverClassName) {
22
+ const pm = this.pluginManager;
23
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
24
+ const { adapterConfig, sessionId } = deserializedArgs;
25
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
26
+ // @ts-expect-error
27
+ return dataAdapter.getGlobalStats(deserializedArgs);
28
+ }
29
+ }
30
+ //# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"WiggleGetGlobalQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAKzE,MAAM,OAAO,gCAAiC,SAAQ,aAAa;IAAnE;;QACE,SAAI,GAAG,kCAAkC,CAAA;IAmC3C,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF"}
@@ -0,0 +1,20 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
3
+ import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
4
+ import { Region } from '@jbrowse/core/util';
5
+ export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
6
+ name: string;
7
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
8
+ serializeArguments(args: RenderArgs & {
9
+ signal?: AbortSignal;
10
+ statusCallback?: (arg: string) => void;
11
+ }, rpcDriverClassName: string): Promise<{}>;
12
+ execute(args: {
13
+ adapterConfig: {};
14
+ signal?: RemoteAbortSignal;
15
+ sessionId: string;
16
+ headers?: Record<string, string>;
17
+ regions: Region[];
18
+ bpPerPx: number;
19
+ }, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
20
+ }
@@ -0,0 +1,47 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
3
+ import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
4
+ import { renameRegionsIfNeeded } from '@jbrowse/core/util';
5
+ import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
6
+ export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
7
+ constructor() {
8
+ super(...arguments);
9
+ this.name = 'WiggleGetMultiRegionQuantitativeStats';
10
+ }
11
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
12
+ async deserializeArguments(args, rpcDriverClassName) {
13
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
14
+ return {
15
+ ...l,
16
+ filters: args.filters
17
+ ? new SerializableFilterChain({
18
+ filters: args.filters,
19
+ })
20
+ : undefined,
21
+ };
22
+ }
23
+ async serializeArguments(args, rpcDriverClassName) {
24
+ var _a, _b, _c;
25
+ const pm = this.pluginManager;
26
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
27
+ if (!assemblyManager) {
28
+ return args;
29
+ }
30
+ const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
31
+ ...args,
32
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
33
+ });
34
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
35
+ }
36
+ async execute(args, rpcDriverClassName) {
37
+ const pm = this.pluginManager;
38
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
39
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
40
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
41
+ if (dataAdapter instanceof BaseFeatureDataAdapter) {
42
+ return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
43
+ }
44
+ throw new Error('Data adapter not found');
45
+ }
46
+ }
47
+ //# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"WiggleGetMultiRegionQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAEhH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAU,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAEhF,MAAM,OAAO,qCAAsC,SAAQ,aAAa;IAAxE;;QACE,SAAI,GAAG,uCAAuC,CAAA;IA+DhD,CAAC;IA7DC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,sBAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,+BAA+B,CAChD,OAAO,EACP,gBAAgB,CACjB,CAAA;SACF;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF"}