@jbrowse/plugin-wiggle 2.4.1 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +2 -2
- package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/BigWigAdapter/configSchema.d.ts +20 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
- package/dist/DensityRenderer/configSchema.d.ts +33 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +44 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +93 -58
- package/dist/LinearWiggleDisplay/models/model.js +8 -25
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiDensityRenderer/configSchema.d.ts +33 -1
- package/dist/MultiLineRenderer/configSchema.d.ts +51 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +62 -23
- package/dist/MultiLinearWiggleDisplay/models/model.js +3 -19
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +73 -1
- package/dist/MultiRowLineRenderer/configSchema.d.ts +51 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/dist/MultiWiggleAdapter/configSchema.d.ts +18 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
- package/dist/MultiWiggleRendering.d.ts +0 -1
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +65 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +73 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
- package/dist/WiggleRPC/MultiWiggleGetSources.js +51 -0
- package/dist/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +37 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +54 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
- package/dist/WiggleRPC/rpcMethods.d.ts +3 -47
- package/dist/WiggleRPC/rpcMethods.js +16 -117
- package/dist/WiggleRPC/rpcMethods.js.map +1 -1
- package/dist/WiggleRendering.d.ts +0 -1
- package/dist/XYPlotRenderer/configSchema.d.ts +65 -1
- package/dist/configSchema.d.ts +51 -1
- package/dist/index.d.ts +156 -47
- package/dist/index.js +2 -2
- package/dist/index.js.map +1 -1
- package/dist/shared/SetMinMaxDialog.d.ts +0 -1
- package/dist/shared/YScaleBar.d.ts +0 -1
- package/dist/util.d.ts +9 -6
- package/dist/util.js +13 -12
- package/dist/util.js.map +1 -1
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +2 -2
- package/esm/BigWigAdapter/BigWigAdapter.js +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/esm/BigWigAdapter/configSchema.d.ts +20 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
- package/esm/DensityRenderer/configSchema.d.ts +33 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +44 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
- package/esm/LinearWiggleDisplay/models/model.d.ts +93 -58
- package/esm/LinearWiggleDisplay/models/model.js +10 -27
- package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/MultiDensityRenderer/configSchema.d.ts +33 -1
- package/esm/MultiLineRenderer/configSchema.d.ts +51 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +62 -23
- package/esm/MultiLinearWiggleDisplay/models/model.js +4 -20
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +73 -1
- package/esm/MultiRowLineRenderer/configSchema.d.ts +51 -1
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +3 -2
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/esm/MultiWiggleAdapter/configSchema.d.ts +18 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
- package/esm/MultiWiggleRendering.d.ts +0 -1
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +65 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +73 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
- package/esm/WiggleRPC/MultiWiggleGetSources.js +44 -0
- package/esm/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +30 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +47 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
- package/esm/WiggleRPC/rpcMethods.d.ts +3 -47
- package/esm/WiggleRPC/rpcMethods.js +3 -111
- package/esm/WiggleRPC/rpcMethods.js.map +1 -1
- package/esm/WiggleRendering.d.ts +0 -1
- package/esm/XYPlotRenderer/configSchema.d.ts +65 -1
- package/esm/configSchema.d.ts +51 -1
- package/esm/index.d.ts +156 -47
- package/esm/index.js +3 -3
- package/esm/index.js.map +1 -1
- package/esm/shared/SetMinMaxDialog.d.ts +0 -1
- package/esm/shared/YScaleBar.d.ts +0 -1
- package/esm/util.d.ts +9 -6
- package/esm/util.js +10 -9
- package/esm/util.js.map +1 -1
- package/package.json +3 -3
- package/src/BigWigAdapter/BigWigAdapter.test.ts +8 -3
- package/src/BigWigAdapter/BigWigAdapter.ts +6 -3
- package/src/LinearWiggleDisplay/models/model.tsx +11 -29
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +53 -50
- package/src/MultiLinearWiggleDisplay/models/model.tsx +4 -20
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +1 -1
- package/src/WiggleRPC/MultiWiggleGetSources.ts +68 -0
- package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +44 -0
- package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +73 -0
- package/src/WiggleRPC/rpcMethods.ts +3 -170
- package/src/index.ts +4 -4
- package/src/util.ts +24 -17
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").
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declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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name: {
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description: string;
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type: string;
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defaultValue: string;
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};
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assemblyNames: {
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description: string;
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type: string;
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defaultValue: string[];
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};
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description: {
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description: string;
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type: string;
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defaultValue: string;
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};
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category: {
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description: string;
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type: string;
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defaultValue: never[];
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};
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metadata: {
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type: string;
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description: string;
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defaultValue: {};
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};
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adapter: import("mobx-state-tree").IAnyModelType;
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textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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indexingAttributes: {
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type: string;
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description: string;
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defaultValue: string[];
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};
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indexingFeatureTypesToExclude: {
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type: string;
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description: string;
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defaultValue: string[];
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};
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textSearchAdapter: import("mobx-state-tree").IAnyModelType;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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feature: {
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type: string;
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description: string;
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defaultValue: {};
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contextVariable: string[];
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};
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subfeatures: {
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type: string;
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description: string;
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defaultValue: {};
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contextVariable: string[];
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};
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depth: {
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defaultValue: number;
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description: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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config: {
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type: string;
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description: string;
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defaultValue: {};
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contextVariable: string[];
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};
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hideUris: {
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defaultValue: boolean;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
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export default configSchema;
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declare const configSchema: import("@jbrowse/core/configuration").
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declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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/**
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* #slot
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displayCrossHatches: {
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type: string;
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description: string;
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defaultValue: boolean;
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};
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/**
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* #slot
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summaryScoreMode: {
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type: string;
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model: import("mobx-state-tree").ISimpleType<string>;
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description: string;
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defaultValue: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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color: {
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description: string;
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defaultValue: string;
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};
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posColor: {
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negColor: {
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defaultValue: string;
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};
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clipColor: {
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description: string;
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defaultValue: string;
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};
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bicolorPivot: {
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type: string;
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model: import("mobx-state-tree").ISimpleType<string>;
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description: string;
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defaultValue: string;
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};
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bicolorPivotValue: {
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defaultValue: number;
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description: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
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export default configSchema;
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declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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filled: {
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defaultValue: boolean;
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};
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displayCrossHatches: {
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description: string;
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};
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summaryScoreMode: {
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model: import("mobx-state-tree").ISimpleType<string>;
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minSize: {
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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color: {
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clipColor: {
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bicolorPivotValue: {
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
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export default configSchema;
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getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
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getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
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getSources(): Promise<{
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class MultiWiggleAdapter extends BaseFeatureDataAdapter {
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async getAdapters() {
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const getSubAdapter = this.getSubAdapter;
|
|
13
13
|
if (!getSubAdapter) {
|
|
@@ -66,7 +66,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
|
|
|
66
66
|
}, opts.signal);
|
|
67
67
|
}
|
|
68
68
|
// always render bigwig instead of calculating a feature density for it
|
|
69
|
-
async
|
|
69
|
+
async getMultiRegionFeatureDensityStats(_regions) {
|
|
70
70
|
return { featureDensity: 0 };
|
|
71
71
|
}
|
|
72
72
|
// in another adapter type, this could be dynamic depending on region or
|
|
@@ -86,4 +86,5 @@ MultiWiggleAdapter.capabilities = [
|
|
|
86
86
|
'hasLocalStats',
|
|
87
87
|
'hasGlobalStats',
|
|
88
88
|
];
|
|
89
|
+
export default MultiWiggleAdapter;
|
|
89
90
|
//# sourceMappingURL=MultiWiggleAdapter.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,GAAG,EAAE,GAAG,EAAE,MAAM,oBAAoB,CAAA;AACrE,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAQD,
|
|
1
|
+
{"version":3,"file":"MultiWiggleAdapter.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/MultiWiggleAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,aAAa,EAAW,GAAG,EAAE,GAAG,EAAE,MAAM,oBAAoB,CAAA;AACrE,OAAO,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AAC5B,OAAO,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAA;AAMpC,SAAS,WAAW,CAAC,GAAW;IAC9B,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;AACrD,CAAC;AAQD,MAAqB,kBAAmB,SAAQ,sBAAsB;IAO7D,KAAK,CAAC,WAAW;QACtB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,CAAC,aAAa,EAAE;YAClB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;SAC9C;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC1C,IAAI,CAAC,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,CAAA,EAAE;YACrB,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAa,CAAA;YACnD,QAAQ,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAC/B,IAAI,EAAE,eAAe;gBACrB,MAAM,EAAE,WAAW,CAAC,KAAK,CAAC;gBAC1B,cAAc,EAAE;oBACd,GAAG,EAAE,KAAK;iBACX;aACF,CAAC,CAAC,CAAA;SACJ;QAED,OAAO,OAAO,CAAC,GAAG;QAChB,8DAA8D;QAC9D,QAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,IAAS,EAAE,EAAE;YAC/B,MAAM,WAAW,GAAG,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC;iBAC5C,WAAqC,CAAA;YACxC,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,IAAI,IAAI,WAAW,CAAC,EAAE;gBACnC,GAAG,IAAI;gBACP,WAAW;aACZ,CAAA;QACH,CAAC,CAAC,CACH,CAAA;IACH,CAAC;IAED,gDAAgD;IACzC,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAChC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CACnD,CAAA;QACD,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,MAAM,KAAK,GAAG,CACZ,MAAM,OAAO,CAAC,GAAG;QACf,mBAAmB;QACnB,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,eAAC,OAAA,MAAA,MAAA,GAAG,CAAC,WAAW,EAAC,cAAc,mDAAG,IAAI,CAAC,CAAA,EAAA,CAAC,CAC5D,CACF,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClB,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAA;QAChD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;YACzC,KAAK,CACH,GAAG,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CACpB,GAAG,CAAC,WAAW,CAAC,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,IAAI,CAC5C,GAAG,CAAC,CAAC,CAAC,EAAE;YACN,wCAAwC;YACxC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACb,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,IAAI,aAAa,CAAC;oBAChB,GAAG,CAAC,CAAC,MAAM,EAAE;oBACb,QAAQ,EAAE,GAAG,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE;oBACnC,MAAM,EAAE,GAAG,CAAC,MAAM;iBACnB,CAAC,CACP,CACF,CACF,CACF,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;QACvB,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACjB,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,iCAAiC,CAAC,QAAkB;QACxD,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAED,wEAAwE;IACxE,4EAA4E;IAC5E,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,EAAE,CAAA;QACzC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;YAC/D,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,GAAG,IAAI;SACR,CAAC,CAAC,CAAA;IACL,CAAC;IAEM,aAAa,KAAU,CAAC;;AAjGjB,+BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA;eALkB,kBAAkB"}
|
|
@@ -1,2 +1,19 @@
|
|
|
1
|
-
declare const MultiWiggleAdapter: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
subadapters: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: never[];
|
|
8
|
+
description: string;
|
|
9
|
+
};
|
|
10
|
+
/**
|
|
11
|
+
* #slot
|
|
12
|
+
*/
|
|
13
|
+
bigWigs: {
|
|
14
|
+
type: string;
|
|
15
|
+
description: string;
|
|
16
|
+
defaultValue: never[];
|
|
17
|
+
};
|
|
18
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
2
19
|
export default MultiWiggleAdapter;
|
|
@@ -1,2 +1,66 @@
|
|
|
1
|
-
declare const configSchema: import("@jbrowse/core/configuration").
|
|
1
|
+
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
+
/**
|
|
3
|
+
* #slot
|
|
4
|
+
*/
|
|
5
|
+
filled: {
|
|
6
|
+
type: string;
|
|
7
|
+
defaultValue: boolean;
|
|
8
|
+
};
|
|
9
|
+
/**
|
|
10
|
+
* #slot
|
|
11
|
+
*/
|
|
12
|
+
displayCrossHatches: {
|
|
13
|
+
type: string;
|
|
14
|
+
description: string;
|
|
15
|
+
defaultValue: boolean;
|
|
16
|
+
};
|
|
17
|
+
/**
|
|
18
|
+
* #slot
|
|
19
|
+
*/
|
|
20
|
+
summaryScoreMode: {
|
|
21
|
+
type: string;
|
|
22
|
+
model: import("mobx-state-tree").ISimpleType<string>;
|
|
23
|
+
description: string;
|
|
24
|
+
defaultValue: string;
|
|
25
|
+
};
|
|
26
|
+
/**
|
|
27
|
+
* #slot
|
|
28
|
+
*/
|
|
29
|
+
minSize: {
|
|
30
|
+
type: string;
|
|
31
|
+
defaultValue: number;
|
|
32
|
+
};
|
|
33
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
34
|
+
color: {
|
|
35
|
+
type: string;
|
|
36
|
+
description: string;
|
|
37
|
+
defaultValue: string;
|
|
38
|
+
};
|
|
39
|
+
posColor: {
|
|
40
|
+
type: string;
|
|
41
|
+
description: string;
|
|
42
|
+
defaultValue: string;
|
|
43
|
+
};
|
|
44
|
+
negColor: {
|
|
45
|
+
type: string;
|
|
46
|
+
description: string;
|
|
47
|
+
defaultValue: string;
|
|
48
|
+
};
|
|
49
|
+
clipColor: {
|
|
50
|
+
type: string;
|
|
51
|
+
description: string;
|
|
52
|
+
defaultValue: string;
|
|
53
|
+
};
|
|
54
|
+
bicolorPivot: {
|
|
55
|
+
type: string;
|
|
56
|
+
model: import("mobx-state-tree").ISimpleType<string>;
|
|
57
|
+
description: string;
|
|
58
|
+
defaultValue: string;
|
|
59
|
+
};
|
|
60
|
+
bicolorPivotValue: {
|
|
61
|
+
type: string;
|
|
62
|
+
defaultValue: number;
|
|
63
|
+
description: string;
|
|
64
|
+
};
|
|
65
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
|
|
2
66
|
export default configSchema;
|
|
@@ -1,3 +1,75 @@
|
|
|
1
1
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").
|
|
2
|
+
declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
3
|
+
name: {
|
|
4
|
+
description: string;
|
|
5
|
+
type: string;
|
|
6
|
+
defaultValue: string;
|
|
7
|
+
};
|
|
8
|
+
assemblyNames: {
|
|
9
|
+
description: string;
|
|
10
|
+
type: string;
|
|
11
|
+
defaultValue: string[];
|
|
12
|
+
};
|
|
13
|
+
description: {
|
|
14
|
+
description: string;
|
|
15
|
+
type: string;
|
|
16
|
+
defaultValue: string;
|
|
17
|
+
};
|
|
18
|
+
category: {
|
|
19
|
+
description: string;
|
|
20
|
+
type: string;
|
|
21
|
+
defaultValue: never[];
|
|
22
|
+
};
|
|
23
|
+
metadata: {
|
|
24
|
+
type: string;
|
|
25
|
+
description: string;
|
|
26
|
+
defaultValue: {};
|
|
27
|
+
};
|
|
28
|
+
adapter: import("mobx-state-tree").IAnyModelType;
|
|
29
|
+
textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
30
|
+
indexingAttributes: {
|
|
31
|
+
type: string;
|
|
32
|
+
description: string;
|
|
33
|
+
defaultValue: string[];
|
|
34
|
+
};
|
|
35
|
+
indexingFeatureTypesToExclude: {
|
|
36
|
+
type: string;
|
|
37
|
+
description: string;
|
|
38
|
+
defaultValue: string[];
|
|
39
|
+
};
|
|
40
|
+
textSearchAdapter: import("mobx-state-tree").IAnyModelType;
|
|
41
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
42
|
+
displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
43
|
+
formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
44
|
+
feature: {
|
|
45
|
+
type: string;
|
|
46
|
+
description: string;
|
|
47
|
+
defaultValue: {};
|
|
48
|
+
contextVariable: string[];
|
|
49
|
+
};
|
|
50
|
+
subfeatures: {
|
|
51
|
+
type: string;
|
|
52
|
+
description: string;
|
|
53
|
+
defaultValue: {};
|
|
54
|
+
contextVariable: string[];
|
|
55
|
+
};
|
|
56
|
+
depth: {
|
|
57
|
+
type: string;
|
|
58
|
+
defaultValue: number;
|
|
59
|
+
description: string;
|
|
60
|
+
};
|
|
61
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
62
|
+
formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
63
|
+
config: {
|
|
64
|
+
type: string;
|
|
65
|
+
description: string;
|
|
66
|
+
defaultValue: {};
|
|
67
|
+
contextVariable: string[];
|
|
68
|
+
};
|
|
69
|
+
hideUris: {
|
|
70
|
+
type: string;
|
|
71
|
+
defaultValue: boolean;
|
|
72
|
+
};
|
|
73
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
74
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
|
|
3
75
|
export default configSchemaFactory;
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
|
|
3
|
+
import { Region } from '@jbrowse/core/util';
|
|
4
|
+
import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
|
|
5
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
6
|
+
export declare class MultiWiggleGetSources extends RpcMethodType {
|
|
7
|
+
name: string;
|
|
8
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
9
|
+
serializeArguments(args: RenderArgs & {
|
|
10
|
+
signal?: AbortSignal;
|
|
11
|
+
statusCallback?: (arg: string) => void;
|
|
12
|
+
}, rpcDriverClassName: string): Promise<{}>;
|
|
13
|
+
execute(args: {
|
|
14
|
+
adapterConfig: AnyConfigurationModel;
|
|
15
|
+
signal?: RemoteAbortSignal;
|
|
16
|
+
sessionId: string;
|
|
17
|
+
headers?: Record<string, string>;
|
|
18
|
+
regions: Region[];
|
|
19
|
+
bpPerPx: number;
|
|
20
|
+
}, rpcDriverClassName: string): Promise<any>;
|
|
21
|
+
}
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
|
|
3
|
+
import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
4
|
+
import { renameRegionsIfNeeded } from '@jbrowse/core/util';
|
|
5
|
+
export class MultiWiggleGetSources extends RpcMethodType {
|
|
6
|
+
constructor() {
|
|
7
|
+
super(...arguments);
|
|
8
|
+
this.name = 'MultiWiggleGetSources';
|
|
9
|
+
}
|
|
10
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
11
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
12
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
13
|
+
return {
|
|
14
|
+
...l,
|
|
15
|
+
filters: args.filters
|
|
16
|
+
? new SerializableFilterChain({
|
|
17
|
+
filters: args.filters,
|
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})
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: undefined,
|
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};
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}
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|
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async serializeArguments(args, rpcDriverClassName) {
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var _a, _b, _c;
|
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|
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const pm = this.pluginManager;
|
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|
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const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
|
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|
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if (!assemblyManager) {
|
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return args;
|
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|
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}
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const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
|
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|
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...args,
|
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|
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filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
|
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});
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|
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return super.serializeArguments(renamedArgs, rpcDriverClassName);
|
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}
|
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async execute(args, rpcDriverClassName) {
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const pm = this.pluginManager;
|
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const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
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|
+
const { regions, adapterConfig, sessionId } = deserializedArgs;
|
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|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
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|
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// @ts-expect-error
|
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|
+
return dataAdapter.getSources(regions, deserializedArgs);
|
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}
|
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}
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//# sourceMappingURL=MultiWiggleGetSources.js.map
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@@ -0,0 +1 @@
|
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1
|
+
{"version":3,"file":"MultiWiggleGetSources.js","sourceRoot":"","sources":["../../src/WiggleRPC/MultiWiggleGetSources.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAIlE,MAAM,OAAO,qBAAsB,SAAQ,aAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IA0DhC,CAAC;IAxDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
|
|
3
|
+
import { QuantitativeStats } from '@jbrowse/core/util/stats';
|
|
4
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
5
|
+
export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
|
|
6
|
+
name: string;
|
|
7
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
8
|
+
execute(args: {
|
|
9
|
+
adapterConfig: AnyConfigurationModel;
|
|
10
|
+
signal?: RemoteAbortSignal;
|
|
11
|
+
headers?: Record<string, string>;
|
|
12
|
+
sessionId: string;
|
|
13
|
+
}, rpcDriverClassName: string): Promise<QuantitativeStats>;
|
|
14
|
+
}
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
|
|
3
|
+
import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
4
|
+
export class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
|
|
5
|
+
constructor() {
|
|
6
|
+
super(...arguments);
|
|
7
|
+
this.name = 'WiggleGetGlobalQuantitativeStats';
|
|
8
|
+
}
|
|
9
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
10
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
11
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
12
|
+
return {
|
|
13
|
+
...l,
|
|
14
|
+
filters: args.filters
|
|
15
|
+
? new SerializableFilterChain({
|
|
16
|
+
filters: args.filters,
|
|
17
|
+
})
|
|
18
|
+
: undefined,
|
|
19
|
+
};
|
|
20
|
+
}
|
|
21
|
+
async execute(args, rpcDriverClassName) {
|
|
22
|
+
const pm = this.pluginManager;
|
|
23
|
+
const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
|
24
|
+
const { adapterConfig, sessionId } = deserializedArgs;
|
|
25
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
26
|
+
// @ts-expect-error
|
|
27
|
+
return dataAdapter.getGlobalStats(deserializedArgs);
|
|
28
|
+
}
|
|
29
|
+
}
|
|
30
|
+
//# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"WiggleGetGlobalQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAKzE,MAAM,OAAO,gCAAiC,SAAQ,aAAa;IAAnE;;QACE,SAAI,GAAG,kCAAkC,CAAA;IAmC3C,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF"}
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
|
|
3
|
+
import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
|
|
4
|
+
import { Region } from '@jbrowse/core/util';
|
|
5
|
+
export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
|
|
6
|
+
name: string;
|
|
7
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
8
|
+
serializeArguments(args: RenderArgs & {
|
|
9
|
+
signal?: AbortSignal;
|
|
10
|
+
statusCallback?: (arg: string) => void;
|
|
11
|
+
}, rpcDriverClassName: string): Promise<{}>;
|
|
12
|
+
execute(args: {
|
|
13
|
+
adapterConfig: {};
|
|
14
|
+
signal?: RemoteAbortSignal;
|
|
15
|
+
sessionId: string;
|
|
16
|
+
headers?: Record<string, string>;
|
|
17
|
+
regions: Region[];
|
|
18
|
+
bpPerPx: number;
|
|
19
|
+
}, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
|
|
20
|
+
}
|
|
@@ -0,0 +1,47 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
|
|
3
|
+
import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
4
|
+
import { renameRegionsIfNeeded } from '@jbrowse/core/util';
|
|
5
|
+
import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
6
|
+
export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
|
|
7
|
+
constructor() {
|
|
8
|
+
super(...arguments);
|
|
9
|
+
this.name = 'WiggleGetMultiRegionQuantitativeStats';
|
|
10
|
+
}
|
|
11
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
12
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
13
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
14
|
+
return {
|
|
15
|
+
...l,
|
|
16
|
+
filters: args.filters
|
|
17
|
+
? new SerializableFilterChain({
|
|
18
|
+
filters: args.filters,
|
|
19
|
+
})
|
|
20
|
+
: undefined,
|
|
21
|
+
};
|
|
22
|
+
}
|
|
23
|
+
async serializeArguments(args, rpcDriverClassName) {
|
|
24
|
+
var _a, _b, _c;
|
|
25
|
+
const pm = this.pluginManager;
|
|
26
|
+
const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
|
|
27
|
+
if (!assemblyManager) {
|
|
28
|
+
return args;
|
|
29
|
+
}
|
|
30
|
+
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
|
|
31
|
+
...args,
|
|
32
|
+
filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
|
|
33
|
+
});
|
|
34
|
+
return super.serializeArguments(renamedArgs, rpcDriverClassName);
|
|
35
|
+
}
|
|
36
|
+
async execute(args, rpcDriverClassName) {
|
|
37
|
+
const pm = this.pluginManager;
|
|
38
|
+
const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
|
39
|
+
const { regions, adapterConfig, sessionId } = deserializedArgs;
|
|
40
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
41
|
+
if (dataAdapter instanceof BaseFeatureDataAdapter) {
|
|
42
|
+
return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
|
|
43
|
+
}
|
|
44
|
+
throw new Error('Data adapter not found');
|
|
45
|
+
}
|
|
46
|
+
}
|
|
47
|
+
//# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"WiggleGetMultiRegionQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAEhH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAU,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAEhF,MAAM,OAAO,qCAAsC,SAAQ,aAAa;IAAxE;;QACE,SAAI,GAAG,uCAAuC,CAAA;IA+DhD,CAAC;IA7DC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,sBAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,+BAA+B,CAChD,OAAO,EACP,gBAAgB,CACjB,CAAA;SACF;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF"}
|