@jbrowse/plugin-wiggle 2.16.1 → 2.18.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +26 -26
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +1 -1
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.js +1 -2
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/dist/LinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -12
- package/dist/LinearWiggleDisplay/{models/configSchema.js → configSchema.js} +2 -17
- package/dist/LinearWiggleDisplay/index.d.ts +2 -2
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/{esm/LinearWiggleDisplay/models → dist/LinearWiggleDisplay}/model.d.ts +21 -63
- package/dist/LinearWiggleDisplay/{models/model.js → model.js} +66 -80
- package/dist/LinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/dist/LinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +2 -3
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +3 -7
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +3 -5
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +15 -26
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -10
- package/dist/MultiLinearWiggleDisplay/{models/configSchema.js → configSchema.js} +3 -21
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +3 -3
- package/dist/MultiLinearWiggleDisplay/{models/model.d.ts → model.d.ts} +25 -129
- package/dist/MultiLinearWiggleDisplay/{models/model.js → model.js} +108 -183
- package/dist/MultiLinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/dist/MultiLinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +3 -21
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +5 -4
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +12 -15
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/dist/MultiWiggleRendering.d.ts +3 -3
- package/dist/MultiWiggleRendering.js +2 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/Tooltip.js +1 -2
- package/dist/WiggleBaseRenderer.d.ts +6 -9
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +2 -2
- package/dist/WiggleRendering.js +1 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +3 -21
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +17 -0
- package/dist/getMultiWiggleSourcesAutorun.js +38 -0
- package/dist/getQuantitativeStats.d.ts +13 -0
- package/dist/getQuantitativeStats.js +70 -0
- package/dist/getQuantitativeStatsAutorun.d.ts +13 -0
- package/dist/getQuantitativeStatsAutorun.js +35 -0
- package/dist/index.d.ts +6 -6
- package/dist/index.js +21 -24
- package/dist/shared/SetMinMaxDialog.js +1 -1
- package/{esm/shared/configShared.d.ts → dist/shared/SharedWiggleConfigSchema.d.ts} +0 -26
- package/dist/shared/{configShared.js → SharedWiggleConfigSchema.js} +1 -30
- package/{esm/shared/modelShared.d.ts → dist/shared/SharedWiggleMixin.d.ts} +22 -213
- package/dist/shared/{modelShared.js → SharedWiggleMixin.js} +15 -174
- package/dist/util.d.ts +1 -53
- package/dist/util.js +1 -141
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.js +1 -2
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -3
- package/esm/LinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -12
- package/esm/LinearWiggleDisplay/{models/configSchema.js → configSchema.js} +1 -16
- package/esm/LinearWiggleDisplay/index.d.ts +2 -2
- package/esm/LinearWiggleDisplay/index.js +4 -4
- package/{dist/LinearWiggleDisplay/models → esm/LinearWiggleDisplay}/model.d.ts +21 -63
- package/esm/LinearWiggleDisplay/{models/model.js → model.js} +67 -81
- package/esm/LinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/esm/LinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +4 -8
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -6
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +16 -27
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -10
- package/esm/MultiLinearWiggleDisplay/{models/configSchema.js → configSchema.js} +2 -20
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +3 -3
- package/esm/MultiLinearWiggleDisplay/{models/model.d.ts → model.d.ts} +25 -129
- package/esm/MultiLinearWiggleDisplay/{models/model.js → model.js} +108 -183
- package/esm/MultiLinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/esm/MultiLinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +3 -21
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +5 -4
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +13 -16
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +3 -3
- package/esm/MultiWiggleRendering.js +2 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/Tooltip.js +1 -2
- package/esm/WiggleBaseRenderer.d.ts +6 -9
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +2 -2
- package/esm/WiggleRendering.js +1 -3
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +3 -21
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +17 -0
- package/esm/getMultiWiggleSourcesAutorun.js +35 -0
- package/esm/getQuantitativeStats.d.ts +13 -0
- package/esm/getQuantitativeStats.js +67 -0
- package/esm/getQuantitativeStatsAutorun.d.ts +13 -0
- package/esm/getQuantitativeStatsAutorun.js +32 -0
- package/esm/index.d.ts +6 -6
- package/esm/index.js +13 -16
- package/esm/shared/SetMinMaxDialog.js +1 -1
- package/{dist/shared/configShared.d.ts → esm/shared/SharedWiggleConfigSchema.d.ts} +0 -26
- package/esm/shared/{configShared.js → SharedWiggleConfigSchema.js} +1 -30
- package/{dist/shared/modelShared.d.ts → esm/shared/SharedWiggleMixin.d.ts} +22 -213
- package/esm/shared/{modelShared.js → SharedWiggleMixin.js} +16 -175
- package/esm/util.d.ts +1 -53
- package/esm/util.js +1 -139
- package/package.json +2 -4
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exports.default = SetColorDialog;
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const react_1 = __importStar(require("react"));
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const util_1 = require("@jbrowse/core/util");
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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const util_1 = require("@jbrowse/core/util");
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const clone_1 = __importDefault(require("clone"));
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// locals
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const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
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const SourcesGrid_1 = __importDefault(require("./SourcesGrid"));
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const useStyles = (0, mui_1.makeStyles)()({
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function SetColorDialog({ model, handleClose, }) {
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const { classes } = useStyles();
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const { sources } = model;
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const [currLayout, setCurrLayout] = (0, react_1.useState)((
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const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips',
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const [currLayout, setCurrLayout] = (0, react_1.useState)(structuredClone(sources || []));
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const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', false);
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return (react_1.default.createElement(DraggableDialog_1.default, { open: true, onClose: handleClose, maxWidth: "xl", title: 'Multi-wiggle color/arrangement editor' },
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react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
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const
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const ui_1 = require("@jbrowse/core/ui");
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const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
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const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
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const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
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const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
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const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
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const material_1 = require("@mui/material");
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const x_data_grid_1 = require("@mui/x-data-grid");
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const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
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import React from 'react';
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type Coord = [number, number];
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@@ -6,9 +6,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
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@@ -7,10 +7,10 @@ exports.YScaleBars = void 0;
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const react_1 = __importDefault(require("react"));
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const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
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@@ -3,8 +3,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
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exports.moveUp = moveUp;
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const util_1 = require("@jbrowse/core/util");
|
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|
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8
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function moveUp(arr, sel, by = 1) {
|
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const idxs = sel
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.map(l => arr.findIndex(v => v.name === l))
|
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@@ -1,16 +1,10 @@
|
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-
import PluginManager from '@jbrowse/core/PluginManager';
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1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
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export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
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/**
|
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* #slot
|
|
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*/
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defaultRendering: {
|
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type: string;
|
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model: import("mobx-state-tree").ISimpleType<string>;
|
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defaultValue: string;
|
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7
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};
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/**
|
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|
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*/
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renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
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MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
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MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -18,9 +12,6 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
|
|
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MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
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MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
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|
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|
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|
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type: string;
|
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|
|
@@ -6,14 +6,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
6
6
|
exports.default = WiggleConfigFactory;
|
|
7
7
|
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|
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|
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|
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|
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/**
|
|
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|
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* #config MultiLinearWiggleDisplay
|
|
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|
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* extends
|
|
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|
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* - [SharedWiggleDisplay](../sharedwiggledisplay)
|
|
15
|
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*/
|
|
16
|
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function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
9
|
+
const SharedWiggleConfigSchema_1 = __importDefault(require("../shared/SharedWiggleConfigSchema"));
|
|
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|
+
function x() { }
|
|
17
11
|
function WiggleConfigFactory(pluginManager) {
|
|
18
12
|
const MultiXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiXYPlotRenderer').configSchema;
|
|
19
13
|
const MultiDensityRendererConfigSchema = pluginManager.getRendererType('MultiDensityRenderer').configSchema;
|
|
@@ -21,9 +15,6 @@ function WiggleConfigFactory(pluginManager) {
|
|
|
21
15
|
const MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
|
|
22
16
|
const MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
|
|
23
17
|
return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
|
|
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|
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/**
|
|
25
|
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* #slot
|
|
26
|
-
*/
|
|
27
18
|
defaultRendering: {
|
|
28
19
|
type: 'stringEnum',
|
|
29
20
|
model: mobx_state_tree_1.types.enumeration('Rendering', [
|
|
@@ -35,9 +26,6 @@ function WiggleConfigFactory(pluginManager) {
|
|
|
35
26
|
]),
|
|
36
27
|
defaultValue: 'multirowxy',
|
|
37
28
|
},
|
|
38
|
-
/**
|
|
39
|
-
* #slot
|
|
40
|
-
*/
|
|
41
29
|
renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
|
|
42
30
|
MultiXYPlotRenderer: MultiXYPlotRendererConfigSchema,
|
|
43
31
|
MultiDensityRenderer: MultiDensityRendererConfigSchema,
|
|
@@ -45,18 +33,12 @@ function WiggleConfigFactory(pluginManager) {
|
|
|
45
33
|
MultiLineRenderer: MultiLineRendererConfigSchema,
|
|
46
34
|
MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
|
|
47
35
|
}),
|
|
48
|
-
/**
|
|
49
|
-
* #slot
|
|
50
|
-
*/
|
|
51
36
|
height: {
|
|
52
37
|
type: 'number',
|
|
53
38
|
defaultValue: 200,
|
|
54
39
|
},
|
|
55
40
|
}, {
|
|
56
|
-
|
|
57
|
-
* #baseConfiguration
|
|
58
|
-
*/
|
|
59
|
-
baseConfiguration: (0, configShared_1.default)(),
|
|
41
|
+
baseConfiguration: (0, SharedWiggleConfigSchema_1.default)(),
|
|
60
42
|
explicitlyTyped: true,
|
|
61
43
|
});
|
|
62
44
|
}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
|
|
@@ -27,10 +27,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
27
27
|
};
|
|
28
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
29
|
exports.default = MultiLinearWiggleDisplayF;
|
|
30
|
-
const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
|
|
31
|
-
const configSchema_1 = __importDefault(require("./models/configSchema"));
|
|
32
|
-
const model_1 = __importDefault(require("./models/model"));
|
|
33
30
|
const react_1 = require("react");
|
|
31
|
+
const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
|
|
32
|
+
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
33
|
+
const model_1 = __importDefault(require("./model"));
|
|
34
34
|
function MultiLinearWiggleDisplayF(pluginManager) {
|
|
35
35
|
pluginManager.addDisplayType(() => {
|
|
36
36
|
const configSchema = (0, configSchema_1.default)(pluginManager);
|
|
@@ -1,18 +1,9 @@
|
|
|
1
|
-
import {
|
|
2
|
-
import
|
|
3
|
-
import {
|
|
4
|
-
import
|
|
5
|
-
import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
6
|
-
|
|
7
|
-
name: string;
|
|
8
|
-
color?: string;
|
|
9
|
-
group?: string;
|
|
10
|
-
}
|
|
11
|
-
/**
|
|
12
|
-
* #stateModel MultiLinearWiggleDisplay
|
|
13
|
-
* extends
|
|
14
|
-
* - [SharedWiggleMixin](../sharedwigglemixin)
|
|
15
|
-
*/
|
|
1
|
+
import type { Source } from '../util';
|
|
2
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
3
|
+
import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
4
|
+
import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
|
|
5
|
+
import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
6
|
+
import type { Instance } from 'mobx-state-tree';
|
|
16
7
|
export declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
|
|
17
8
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
18
9
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -25,21 +16,12 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
|
|
|
25
16
|
} & {
|
|
26
17
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
27
18
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
28
|
-
region: import("mobx-state-tree").
|
|
29
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
30
|
-
start: import("mobx-state-tree").ISimpleType<number>;
|
|
31
|
-
end: import("mobx-state-tree").ISimpleType<number>;
|
|
32
|
-
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
33
|
-
} & {
|
|
34
|
-
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
35
|
-
}, {
|
|
36
|
-
setRefName(newRefName: string): void;
|
|
37
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
19
|
+
region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
38
20
|
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
39
21
|
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
40
22
|
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
41
23
|
}, {
|
|
42
|
-
|
|
24
|
+
stopToken: string | undefined;
|
|
43
25
|
filled: boolean;
|
|
44
26
|
reactElement: React.ReactElement | undefined;
|
|
45
27
|
features: Map<string, Feature> | undefined;
|
|
@@ -63,15 +45,9 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
|
|
|
63
45
|
doReload(): void;
|
|
64
46
|
afterAttach(): void;
|
|
65
47
|
setStatus(message: string): void;
|
|
66
|
-
setLoading(
|
|
48
|
+
setLoading(newStopToken: string): void;
|
|
67
49
|
setMessage(messageText: string): void;
|
|
68
|
-
setRendered(props:
|
|
69
|
-
reactElement: React.ReactElement;
|
|
70
|
-
features: Map<string, Feature>;
|
|
71
|
-
layout: any;
|
|
72
|
-
maxHeightReached: boolean;
|
|
73
|
-
renderProps: any;
|
|
74
|
-
} | undefined): void;
|
|
50
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
|
|
75
51
|
setError(error: unknown): void;
|
|
76
52
|
reload(): void;
|
|
77
53
|
beforeDestroy(): void;
|
|
@@ -123,13 +99,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
|
|
|
123
99
|
}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
124
100
|
configuration: AnyConfigurationSchemaType;
|
|
125
101
|
} & {
|
|
126
|
-
/**
|
|
127
|
-
* #property
|
|
128
|
-
*/
|
|
129
102
|
type: import("mobx-state-tree").ISimpleType<"MultiLinearWiggleDisplay">;
|
|
130
|
-
/**
|
|
131
|
-
* #property
|
|
132
|
-
*/
|
|
133
103
|
layout: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
|
|
134
104
|
}, {
|
|
135
105
|
rendererTypeName: string;
|
|
@@ -166,9 +136,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
|
|
|
166
136
|
rendererTypeName: string;
|
|
167
137
|
error: unknown;
|
|
168
138
|
message: string | undefined;
|
|
169
|
-
} & import("mobx-state-tree"
|
|
170
|
-
* #action
|
|
171
|
-
*/).IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
139
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
172
140
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
173
141
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
174
142
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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@@ -222,6 +190,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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readonly statsReadyAndRegionNotTooLarge: boolean;
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
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} & {
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@@ -261,19 +230,21 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
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} & {
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message: undefined | string;
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stats: {
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currStatsBpPerPx: number;
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scoreMin: number;
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scoreMax: number;
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} | undefined;
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statsFetchInProgress: undefined |
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statsFetchInProgress: undefined | string;
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} & {
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updateQuantitativeStats(stats: {
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currStatsBpPerPx: number;
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scoreMin: number;
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scoreMax: number;
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}): void;
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setColor(color?: string): void;
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setPosColor(color?: string): void;
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setNegColor(color?: string): void;
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setStatsLoading(arg?: string): void;
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selectFeature(feature: Feature): void;
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setResolution(res: number): void;
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setFill(fill: number): void;
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@@ -315,6 +286,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
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readonly scaleOpts: {
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domain: number[] | undefined;
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stats: {
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currStatsBpPerPx: number;
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scoreMin: number;
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scoreMax: number;
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} | undefined;
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@@ -351,127 +323,54 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
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} & {
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reload(): Promise<void>;
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} & {
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sourcesLoadingStopToken: string | undefined;
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featureUnderMouseVolatile: Feature | undefined;
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sourcesVolatile: Source[] | undefined;
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} & {
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* #action
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*/
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setSourcesLoading(str: string): void;
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setLayout(layout: Source[]): void;
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/**
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* #action
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*/
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clearLayout(): void;
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* #action
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*/
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setSources(sources: Source[]): void;
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/**
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* #action
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*/
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setFeatureUnderMouse(f?: Feature): void;
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} & {
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/**
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* #getter
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*/
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readonly featureUnderMouse: Feature | undefined;
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* #getter
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*/
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readonly TooltipComponent: AnyReactComponentType;
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/**
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* #getter
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*/
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readonly rendererTypeName: string;
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} & {
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/**
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* #getter
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*/
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readonly needsScalebar: boolean;
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* #getter
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*/
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readonly needsFullHeightScalebar: boolean;
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* #getter
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*/
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readonly isMultiRow: boolean;
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* #getter
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* can be used to give it a "color scale" like a R heatmap, not
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* implemented like this yet but flag can be used for this
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*/
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readonly needsCustomLegend: boolean;
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readonly canHaveFill: boolean;
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* #getter
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* the multirowxy and multiline don't need to use colors on the legend
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* boxes since their track is drawn with the color. sort of a stylistic
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* choice
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*/
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readonly renderColorBoxes: boolean;
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/**
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* #getter
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* positions multi-row below the tracklabel even if using overlap
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* tracklabels for everything else
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*/
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readonly prefersOffset: boolean;
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/**
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* #getter
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*/
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readonly sources: {
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color: string;
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baseUri?: string;
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name: string;
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group?: string;
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}[] | undefined;
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readonly quantitativeStatsReady: boolean;
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} & {
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/**
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* #getter
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*/
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readonly rowHeight: number;
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*/
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readonly rowHeightTooSmallForScalebar: boolean;
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/**
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* #getter
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*/
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readonly useMinimalTicks: any;
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} & {
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* #getter
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adapterProps(): any;
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readonly ticks: {
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range: number[];
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values: number[];
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format: (d: import("d3-scale").NumberValue) => string;
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position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
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} | undefined;
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/**
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* #getter
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*/
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readonly colors: string[];
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readonly quantitativeStatsRelevantToCurrentZoom: boolean;
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} & {
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/**
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* #method
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*/
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renderProps(): any;
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/**
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* #getter
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*/
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readonly hasResolution: boolean;
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/**
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* #getter
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*/
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readonly hasGlobalStats: boolean;
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*/
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readonly fillSetting: 2 | 0 | 1;
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} & {
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/**
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* #method
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*/
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readonly fillSetting: 2 | 1 | 0;
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} & {
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trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
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label: string;
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subMenu: ({
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@@ -518,9 +417,6 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
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})[];
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} & {
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afterAttach(): void;
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/**
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* #action
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*/
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renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
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