@jbrowse/plugin-wiggle 2.16.1 → 2.18.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +26 -26
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +1 -1
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.js +1 -2
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -2
- package/dist/LinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -12
- package/dist/LinearWiggleDisplay/{models/configSchema.js → configSchema.js} +2 -17
- package/dist/LinearWiggleDisplay/index.d.ts +2 -2
- package/dist/LinearWiggleDisplay/index.js +4 -4
- package/{esm/LinearWiggleDisplay/models → dist/LinearWiggleDisplay}/model.d.ts +21 -63
- package/dist/LinearWiggleDisplay/{models/model.js → model.js} +66 -80
- package/dist/LinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/dist/LinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +2 -3
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +3 -7
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +3 -5
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +15 -26
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -10
- package/dist/MultiLinearWiggleDisplay/{models/configSchema.js → configSchema.js} +3 -21
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +3 -3
- package/dist/MultiLinearWiggleDisplay/{models/model.d.ts → model.d.ts} +25 -129
- package/dist/MultiLinearWiggleDisplay/{models/model.js → model.js} +108 -183
- package/dist/MultiLinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/dist/MultiLinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +3 -21
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +5 -4
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +12 -15
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/dist/MultiWiggleRendering.d.ts +3 -3
- package/dist/MultiWiggleRendering.js +2 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/Tooltip.js +1 -2
- package/dist/WiggleBaseRenderer.d.ts +6 -9
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +2 -2
- package/dist/WiggleRendering.js +1 -3
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +3 -21
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +17 -0
- package/dist/getMultiWiggleSourcesAutorun.js +38 -0
- package/dist/getQuantitativeStats.d.ts +13 -0
- package/dist/getQuantitativeStats.js +70 -0
- package/dist/getQuantitativeStatsAutorun.d.ts +13 -0
- package/dist/getQuantitativeStatsAutorun.js +35 -0
- package/dist/index.d.ts +6 -6
- package/dist/index.js +21 -24
- package/dist/shared/SetMinMaxDialog.js +1 -1
- package/{esm/shared/configShared.d.ts → dist/shared/SharedWiggleConfigSchema.d.ts} +0 -26
- package/dist/shared/{configShared.js → SharedWiggleConfigSchema.js} +1 -30
- package/{esm/shared/modelShared.d.ts → dist/shared/SharedWiggleMixin.d.ts} +22 -213
- package/dist/shared/{modelShared.js → SharedWiggleMixin.js} +15 -174
- package/dist/util.d.ts +1 -53
- package/dist/util.js +1 -141
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +2 -2
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.js +1 -2
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +3 -3
- package/esm/LinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -12
- package/esm/LinearWiggleDisplay/{models/configSchema.js → configSchema.js} +1 -16
- package/esm/LinearWiggleDisplay/index.d.ts +2 -2
- package/esm/LinearWiggleDisplay/index.js +4 -4
- package/{dist/LinearWiggleDisplay/models → esm/LinearWiggleDisplay}/model.d.ts +21 -63
- package/esm/LinearWiggleDisplay/{models/model.js → model.js} +67 -81
- package/esm/LinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/esm/LinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -2
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +0 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +4 -8
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -6
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +16 -27
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +1 -2
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/{models/configSchema.d.ts → configSchema.d.ts} +1 -10
- package/esm/MultiLinearWiggleDisplay/{models/configSchema.js → configSchema.js} +2 -20
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +3 -3
- package/esm/MultiLinearWiggleDisplay/{models/model.d.ts → model.d.ts} +25 -129
- package/esm/MultiLinearWiggleDisplay/{models/model.js → model.js} +108 -183
- package/esm/MultiLinearWiggleDisplay/{models/renderSvg.d.ts → renderSvg.d.ts} +2 -2
- package/esm/MultiLinearWiggleDisplay/{models/renderSvg.js → renderSvg.js} +2 -2
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +3 -21
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +5 -4
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +13 -16
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +2 -4
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +3 -3
- package/esm/MultiWiggleRendering.js +2 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +1 -2
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/Tooltip.js +1 -2
- package/esm/WiggleBaseRenderer.d.ts +6 -9
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +2 -2
- package/esm/WiggleRendering.js +1 -3
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +3 -21
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +17 -0
- package/esm/getMultiWiggleSourcesAutorun.js +35 -0
- package/esm/getQuantitativeStats.d.ts +13 -0
- package/esm/getQuantitativeStats.js +67 -0
- package/esm/getQuantitativeStatsAutorun.d.ts +13 -0
- package/esm/getQuantitativeStatsAutorun.js +32 -0
- package/esm/index.d.ts +6 -6
- package/esm/index.js +13 -16
- package/esm/shared/SetMinMaxDialog.js +1 -1
- package/{dist/shared/configShared.d.ts → esm/shared/SharedWiggleConfigSchema.d.ts} +0 -26
- package/esm/shared/{configShared.js → SharedWiggleConfigSchema.js} +1 -30
- package/{dist/shared/modelShared.d.ts → esm/shared/SharedWiggleMixin.d.ts} +22 -213
- package/esm/shared/{modelShared.js → SharedWiggleMixin.js} +16 -175
- package/esm/util.d.ts +1 -53
- package/esm/util.js +1 -139
- package/package.json +2 -4
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get needsScalebar() {
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|
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get quantitativeStatsReady() {
|
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|
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|
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|
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|
return {
|
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|
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/**
|
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|
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* #method
|
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|
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*/
|
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|
trackMenuItems() {
|
|
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|
return [
|
|
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|
...superTrackMenuItems(),
|
|
@@ -178,7 +165,10 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
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165
|
onClick: () => {
|
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|
getSession(self).queueDialog(handleClose => [
|
|
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167
|
SetColorDialog,
|
|
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|
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{
|
|
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|
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{
|
|
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|
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model: self,
|
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handleClose,
|
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},
|
|
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|
]);
|
|
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|
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|
|
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|
},
|
|
@@ -190,16 +180,12 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
190
180
|
const { renderSvg: superRenderSvg } = self;
|
|
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181
|
return {
|
|
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182
|
afterAttach() {
|
|
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|
-
// eslint-disable-next-line @typescript-eslint/no-floating-promises
|
|
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183
|
;
|
|
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184
|
(async () => {
|
|
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|
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const {
|
|
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|
-
|
|
185
|
+
const { getQuantitativeStatsAutorun } = await import('../getQuantitativeStatsAutorun');
|
|
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|
+
getQuantitativeStatsAutorun(self);
|
|
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187
|
})();
|
|
199
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|
},
|
|
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|
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/**
|
|
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|
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* #action
|
|
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|
-
*/
|
|
203
189
|
async renderSvg(opts) {
|
|
204
190
|
const { renderSvg } = await import('./renderSvg');
|
|
205
191
|
return renderSvg(self, opts, superRenderSvg);
|
|
@@ -1,4 +1,4 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
-
import {
|
|
3
|
-
import {
|
|
2
|
+
import type { WiggleDisplayModel } from './model';
|
|
3
|
+
import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
4
4
|
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
|
|
@@ -1,13 +1,13 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { getContainingView } from '@jbrowse/core/util';
|
|
3
3
|
import { when } from 'mobx';
|
|
4
|
-
import YScaleBar from '
|
|
4
|
+
import YScaleBar from '../shared/YScaleBar';
|
|
5
5
|
export async function renderSvg(self, opts, superRenderSvg) {
|
|
6
6
|
await when(() => !!self.stats && !!self.regionCannotBeRenderedText);
|
|
7
7
|
const { needsScalebar, stats } = self;
|
|
8
8
|
const { offsetPx } = getContainingView(self);
|
|
9
9
|
return (React.createElement(React.Fragment, null,
|
|
10
|
-
React.createElement("g",
|
|
10
|
+
React.createElement("g", null, await superRenderSvg(opts)),
|
|
11
11
|
needsScalebar && stats ? (React.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
|
|
12
12
|
React.createElement(YScaleBar, { model: self, orientation: "left" }))) : null));
|
|
13
13
|
}
|
|
@@ -1,6 +1,7 @@
|
|
|
1
|
-
import
|
|
2
|
-
import
|
|
3
|
-
|
|
1
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
+
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
4
|
+
export default class MultiDensityPlotRenderer extends WiggleBaseRenderer {
|
|
4
5
|
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
5
6
|
reducedFeatures: Feature[];
|
|
6
7
|
}>;
|
|
@@ -1,8 +1,7 @@
|
|
|
1
1
|
import { groupBy } from '@jbrowse/core/util';
|
|
2
2
|
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
3
3
|
import { drawDensity } from '../drawDensity';
|
|
4
|
-
export default class
|
|
5
|
-
// @ts-expect-error
|
|
4
|
+
export default class MultiDensityPlotRenderer extends WiggleBaseRenderer {
|
|
6
5
|
async draw(ctx, props) {
|
|
7
6
|
const { sources, features } = props;
|
|
8
7
|
const groups = groupBy(features.values(), f => f.get('source'));
|
|
@@ -1,13 +1,7 @@
|
|
|
1
1
|
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
2
|
import baseWiggleRendererConfigSchema from '../configSchema';
|
|
3
|
-
|
|
4
|
-
* #config MultiDensityRenderer
|
|
5
|
-
*/
|
|
6
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
3
|
+
function x() { }
|
|
7
4
|
const configSchema = ConfigurationSchema('MultiDensityRenderer', {}, {
|
|
8
|
-
/**
|
|
9
|
-
* #baseConfiguration
|
|
10
|
-
*/
|
|
11
5
|
baseConfiguration: baseWiggleRendererConfigSchema,
|
|
12
6
|
explicitlyTyped: true,
|
|
13
7
|
});
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiDensityRendererF(pluginManager: PluginManager): void;
|
|
@@ -1,5 +1,6 @@
|
|
|
1
|
-
import
|
|
2
|
-
import
|
|
1
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
+
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
3
4
|
export default class MultiLineRenderer extends WiggleBaseRenderer {
|
|
4
5
|
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
5
6
|
reducedFeatures: Feature[];
|
|
@@ -1,8 +1,7 @@
|
|
|
1
1
|
import { groupBy } from '@jbrowse/core/util';
|
|
2
|
-
import { drawLine } from '../drawLine';
|
|
3
2
|
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
3
|
+
import { drawLine } from '../drawLine';
|
|
4
4
|
export default class MultiLineRenderer extends WiggleBaseRenderer {
|
|
5
|
-
// @ts-expect-error
|
|
6
5
|
async draw(ctx, props) {
|
|
7
6
|
const { sources, features } = props;
|
|
8
7
|
const groups = groupBy(features.values(), f => f.get('source'));
|
|
@@ -1,15 +1,9 @@
|
|
|
1
1
|
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
/**
|
|
3
|
-
* #slot
|
|
4
|
-
*/
|
|
5
2
|
displayCrossHatches: {
|
|
6
3
|
type: string;
|
|
7
4
|
description: string;
|
|
8
5
|
defaultValue: boolean;
|
|
9
6
|
};
|
|
10
|
-
/**
|
|
11
|
-
* #slot
|
|
12
|
-
*/
|
|
13
7
|
summaryScoreMode: {
|
|
14
8
|
type: string;
|
|
15
9
|
model: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -1,22 +1,13 @@
|
|
|
1
1
|
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
2
|
import { types } from 'mobx-state-tree';
|
|
3
3
|
import baseWiggleRendererConfigSchema from '../configSchema';
|
|
4
|
-
|
|
5
|
-
* #config MultiLineRenderer
|
|
6
|
-
*/
|
|
7
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
4
|
+
function x() { }
|
|
8
5
|
const configSchema = ConfigurationSchema('MultiLineRenderer', {
|
|
9
|
-
/**
|
|
10
|
-
* #slot
|
|
11
|
-
*/
|
|
12
6
|
displayCrossHatches: {
|
|
13
7
|
type: 'boolean',
|
|
14
8
|
description: 'choose to draw cross hatches (sideways lines)',
|
|
15
9
|
defaultValue: false,
|
|
16
10
|
},
|
|
17
|
-
/**
|
|
18
|
-
* #slot
|
|
19
|
-
*/
|
|
20
11
|
summaryScoreMode: {
|
|
21
12
|
type: 'stringEnum',
|
|
22
13
|
model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
|
|
@@ -24,9 +15,6 @@ const configSchema = ConfigurationSchema('MultiLineRenderer', {
|
|
|
24
15
|
defaultValue: 'avg',
|
|
25
16
|
},
|
|
26
17
|
}, {
|
|
27
|
-
/**
|
|
28
|
-
* #baseConfiguration
|
|
29
|
-
*/
|
|
30
18
|
baseConfiguration: baseWiggleRendererConfigSchema,
|
|
31
19
|
explicitlyTyped: true,
|
|
32
20
|
});
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiLineRendererF(pluginManager: PluginManager): void;
|
|
@@ -10,7 +10,6 @@ const ColorLegend = observer(function ({ model, rowHeight, labelWidth, exportSVG
|
|
|
10
10
|
const svgOffset = exportSVG ? 10 : 0;
|
|
11
11
|
const extraOffset = svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0);
|
|
12
12
|
return sources ? (React.createElement(React.Fragment, null,
|
|
13
|
-
/* 0.25 for hanging letters like g */
|
|
14
13
|
needsFullHeightScalebar ? (React.createElement(RectBg, { y: 0, x: extraOffset, width: legendWidth, height: (sources.length + 0.25) * rowHeight })) : null,
|
|
15
14
|
sources.map((source, idx) => {
|
|
16
15
|
const boxHeight = Math.min(20, rowHeight);
|
|
@@ -1,10 +1,9 @@
|
|
|
1
1
|
import React, { useRef } from 'react';
|
|
2
|
-
import
|
|
2
|
+
import CloseIcon from '@mui/icons-material/Close';
|
|
3
|
+
import { Dialog, DialogTitle, Divider, IconButton, Paper, ScopedCssBaseline, } from '@mui/material';
|
|
3
4
|
import { observer } from 'mobx-react';
|
|
4
|
-
import { makeStyles } from 'tss-react/mui';
|
|
5
5
|
import Draggable from 'react-draggable';
|
|
6
|
-
|
|
7
|
-
import CloseIcon from '@mui/icons-material/Close';
|
|
6
|
+
import { makeStyles } from 'tss-react/mui';
|
|
8
7
|
const useStyles = makeStyles()(theme => ({
|
|
9
8
|
closeButton: {
|
|
10
9
|
position: 'absolute',
|
|
@@ -15,9 +14,7 @@ const useStyles = makeStyles()(theme => ({
|
|
|
15
14
|
}));
|
|
16
15
|
function PaperComponent(props) {
|
|
17
16
|
const ref = useRef(null);
|
|
18
|
-
return (React.createElement(Draggable, { nodeRef: ref, cancel: '[class*="MuiDialogContent-root"]',
|
|
19
|
-
// @ts-expect-error
|
|
20
|
-
onStart: arg => { var _a, _b; return (_b = (_a = arg.target) === null || _a === void 0 ? void 0 : _a.className) === null || _b === void 0 ? void 0 : _b.includes('MuiDialogTitle'); } },
|
|
17
|
+
return (React.createElement(Draggable, { nodeRef: ref, cancel: '[class*="MuiDialogContent-root"]', onStart: arg => { var _a, _b; return (_b = (_a = arg.target) === null || _a === void 0 ? void 0 : _a.className) === null || _b === void 0 ? void 0 : _b.includes('MuiDialogTitle'); } },
|
|
21
18
|
React.createElement(Paper, { ref: ref, ...props })));
|
|
22
19
|
}
|
|
23
20
|
const DraggableDialog = observer(function DraggableDialog(props) {
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@@ -28,7 +25,6 @@ const DraggableDialog = observer(function DraggableDialog(props) {
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React.createElement(DialogTitle, { style: { cursor: 'move' } },
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title,
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onClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => {
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-
// @ts-expect-error
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onClose();
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} },
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React.createElement(CloseIcon, null))) : null),
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@@ -1,5 +1,5 @@
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1
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-
import { getFillProps } from '@jbrowse/core/util';
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import React from 'react';
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2
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+
import { getFillProps } from '@jbrowse/core/util';
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const RectBg = (props) => {
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const { color = 'rgb(255,255,255,0.8)' } = props;
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return React.createElement("rect", { ...props, ...getFillProps(color) });
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@@ -1,5 +1,5 @@
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1
1
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import React from 'react';
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2
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-
import {
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2
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+
import { getContainingView, measureText } from '@jbrowse/core/util';
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import { observer } from 'mobx-react';
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import RectBg from './RectBg';
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const ScoreLegend = observer(({ model }) => {
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@@ -1,9 +1,7 @@
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1
1
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import React, { useState } from 'react';
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2
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-
import { Button, DialogContent, DialogActions } from '@mui/material';
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3
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-
import { makeStyles } from 'tss-react/mui';
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2
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import { useLocalStorage } from '@jbrowse/core/util';
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5
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-
import
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6
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-
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3
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+
import { Button, DialogActions, DialogContent } from '@mui/material';
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4
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+
import { makeStyles } from 'tss-react/mui';
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7
5
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import DraggableDialog from './DraggableDialog';
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8
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import SourcesGrid from './SourcesGrid';
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7
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const useStyles = makeStyles()({
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@@ -14,8 +12,8 @@ const useStyles = makeStyles()({
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14
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export default function SetColorDialog({ model, handleClose, }) {
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15
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const { classes } = useStyles();
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16
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const { sources } = model;
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17
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-
const [currLayout, setCurrLayout] = useState(
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18
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-
const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips',
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15
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+
const [currLayout, setCurrLayout] = useState(structuredClone(sources || []));
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16
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+
const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', false);
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17
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return (React.createElement(DraggableDialog, { open: true, onClose: handleClose, maxWidth: "xl", title: 'Multi-wiggle color/arrangement editor' },
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20
18
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React.createElement(DialogContent, { className: classes.content },
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React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
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@@ -1,17 +1,15 @@
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1
1
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import React, { useState } from 'react';
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2
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-
import { Button } from '@mui/material';
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3
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-
import { getStr, measureGridWidth } from '@jbrowse/core/util';
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4
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-
import { DataGrid } from '@mui/x-data-grid';
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5
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-
import { makeStyles } from 'tss-react/mui';
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6
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-
import ColorPicker, { ColorPopover } from '@jbrowse/core/ui/ColorPicker';
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7
2
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import { SanitizedHTML } from '@jbrowse/core/ui';
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8
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-
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9
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-
import {
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10
|
-
// icons
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11
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-
import KeyboardDoubleArrowUpIcon from '@mui/icons-material/KeyboardDoubleArrowUp';
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12
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-
import KeyboardDoubleArrowDownIcon from '@mui/icons-material/KeyboardDoubleArrowDown';
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3
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+
import ColorPicker, { ColorPopover } from '@jbrowse/core/ui/ColorPicker';
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4
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+
import { getStr, measureGridWidth } from '@jbrowse/core/util';
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13
5
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import KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown';
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14
6
|
import KeyboardArrowUpIcon from '@mui/icons-material/KeyboardArrowUp';
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7
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+
import KeyboardDoubleArrowDownIcon from '@mui/icons-material/KeyboardDoubleArrowDown';
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8
|
+
import KeyboardDoubleArrowUpIcon from '@mui/icons-material/KeyboardDoubleArrowUp';
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9
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+
import { Button } from '@mui/material';
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10
|
+
import { DataGrid } from '@mui/x-data-grid';
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11
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+
import { makeStyles } from 'tss-react/mui';
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12
|
+
import { moveDown, moveUp } from './util';
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15
13
|
const useStyles = makeStyles()({
|
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16
14
|
cell: {
|
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17
15
|
whiteSpace: 'nowrap',
|
|
@@ -72,16 +70,13 @@ function SourcesGrid({ rows, onChange, showTips, }) {
|
|
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72
70
|
{
|
|
73
71
|
field: 'color',
|
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74
72
|
headerName: 'Color',
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75
|
-
renderCell:
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76
|
-
|
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77
|
-
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78
|
-
|
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79
|
-
|
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80
|
-
|
|
81
|
-
|
|
82
|
-
onChange([...rows]);
|
|
83
|
-
} }));
|
|
84
|
-
},
|
|
73
|
+
renderCell: ({ value, id }) => (React.createElement(ColorPicker, { color: value || 'blue', onChange: c => {
|
|
74
|
+
const elt = rows.find(f => f.name === id);
|
|
75
|
+
if (elt) {
|
|
76
|
+
elt.color = c;
|
|
77
|
+
}
|
|
78
|
+
onChange([...rows]);
|
|
79
|
+
} })),
|
|
85
80
|
},
|
|
86
81
|
{
|
|
87
82
|
field: 'name',
|
|
@@ -94,14 +89,8 @@ function SourcesGrid({ rows, onChange, showTips, }) {
|
|
|
94
89
|
React.createElement(SanitizedHTML, { html: getStr(value) }))),
|
|
95
90
|
width: measureGridWidth(rows.map(r => `${r[val]}`)),
|
|
96
91
|
})),
|
|
97
|
-
], sortModel: [
|
|
98
|
-
/* we control the sort as a controlled component using onSortModelChange */
|
|
99
|
-
], onSortModelChange: args => {
|
|
92
|
+
], sortModel: [], onSortModelChange: args => {
|
|
100
93
|
const sort = args[0];
|
|
101
|
-
// this idx%2 flip flops the sorting order, we could inspect args
|
|
102
|
-
// for sort direction asc or desc but this is just a simplified
|
|
103
|
-
// thing since we are controlling sort instead of the default data
|
|
104
|
-
// grid sort anyways
|
|
105
94
|
const idx = (currSort.idx + 1) % 2;
|
|
106
95
|
const field = sort.field || currSort.field;
|
|
107
96
|
setCurrSort({ idx, field });
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
-
import {
|
|
3
|
-
import { Source } from '../../util';
|
|
4
|
-
import {
|
|
2
|
+
import type { TooltipContentsComponent } from '../../Tooltip';
|
|
3
|
+
import type { Source } from '../../util';
|
|
4
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
5
5
|
type Coord = [number, number];
|
|
6
6
|
declare const WiggleTooltip: (props: {
|
|
7
7
|
model: {
|
|
@@ -1,8 +1,7 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
// locals
|
|
4
|
-
import { toP } from '../../util';
|
|
5
3
|
import Tooltip from '../../Tooltip';
|
|
4
|
+
import { toP } from '../../util';
|
|
6
5
|
const en = (n) => n.toLocaleString('en-US');
|
|
7
6
|
const TooltipContents = React.forwardRef(function TooltipContents2({ model, feature }, ref) {
|
|
8
7
|
const start = feature.get('start');
|
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
-
import {
|
|
2
|
+
import { getContainingView, measureText } from '@jbrowse/core/util';
|
|
3
3
|
import { observer } from 'mobx-react';
|
|
4
|
-
import YScaleBar from '../../shared/YScaleBar';
|
|
5
4
|
import ColorLegend from './ColorLegend';
|
|
6
5
|
import ScoreLegend from './ScoreLegend';
|
|
7
6
|
import { getOffset } from './util';
|
|
7
|
+
import YScaleBar from '../../shared/YScaleBar';
|
|
8
8
|
const Wrapper = observer(function ({ children, model, exportSVG, }) {
|
|
9
9
|
const { height } = model;
|
|
10
10
|
return exportSVG ? (children) : (React.createElement("svg", { style: {
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { getContainingTrack, getContainingView, measureText, } from '@jbrowse/core/util';
|
|
2
1
|
import { getConf } from '@jbrowse/core/configuration';
|
|
2
|
+
import { getContainingTrack, getContainingView, measureText, } from '@jbrowse/core/util';
|
|
3
3
|
export function moveUp(arr, sel, by = 1) {
|
|
4
4
|
const idxs = sel
|
|
5
5
|
.map(l => arr.findIndex(v => v.name === l))
|