@jbrowse/plugin-wiggle 2.11.0 → 2.11.2

package/esm/index.d.ts

@@ -148,6 +148,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
                 selectedRendering: string;
                 resolution: number;
@@ -280,6 +285,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -525,6 +531,11 @@ export default class WigglePlugin extends Plugin {
                         defaultValue: string;
                         contextVariable: string[];
                     };
+                    jexlFilters: {
+                        type: string;
+                        description: string;
+                        defaultValue: never[];
+                    };
                 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             } & {
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -658,6 +669,7 @@ export default class WigglePlugin extends Plugin {
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
                 setFeatureIdUnderMouse(feature?: string | undefined): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;

package/esm/index.js

@@ -17,7 +17,7 @@ import MultiDensityRendererF from './MultiDensityRenderer';
 import MultiLineRendererF from './MultiLineRenderer';
 import MultiRowLineRendererF from './MultiRowLineRenderer';
 import CreateMultiWiggleExtensionF from './CreateMultiWiggleExtension';
-import MultiWiggleAddTrackWidgetF from './MultiWiggleAddTrackWidget';
+import MultiWiggleAddTrackWorkflowF from './MultiWiggleAddTrackWorkflow';
 import * as utils from './util';
 import { WiggleGetGlobalQuantitativeStats, WiggleGetMultiRegionQuantitativeStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
 import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
@@ -51,7 +51,7 @@ export default class WigglePlugin extends Plugin {
         MultiDensityRendererF(pm);
         MultiLineRendererF(pm);
         MultiRowLineRendererF(pm);
-        MultiWiggleAddTrackWidgetF(pm);
+        MultiWiggleAddTrackWorkflowF(pm);
         CreateMultiWiggleExtensionF(pm);
         pm.addToExtensionPoint('Core-guessAdapterForLocation', (cb) => {
             return (file, index, hint) => {

package/esm/shared/configShared.d.ts

@@ -71,7 +71,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
     fetchSizeLimit: {
         type: string;
         defaultValue: number;
-        description: string;
+        description: string; /**
+         * #slot
+         */
     };
     height: {
         type: string;
@@ -84,4 +86,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
         defaultValue: string;
         contextVariable: string[];
     };
+    jexlFilters: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/esm/shared/modelShared.d.ts

@@ -76,7 +76,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -89,6 +91,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
     /**
@@ -268,13 +275,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     readonly featureUnderMouse: Feature | undefined;
     getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    /**
+     * #action
+     */
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
 } & {
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: Feature): void; /**
-     * #getter
-     */
+    selectFeature(feature: Feature): void;
+    navToFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string | undefined): void;
     setContextMenuFeature(feature?: Feature | undefined): void;
@@ -283,12 +292,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any; /**
-     * #getter
-     */
+    renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>; /**
-     * #getter
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    /**
+     * #method
      */
     afterAttach(): void;
 } & {
@@ -563,7 +571,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         fetchSizeLimit: {
             type: string;
             defaultValue: number;
-            description: string;
+            description: string; /**
+             * #property
+             */
         };
         height: {
             type: string;
@@ -576,6 +586,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             defaultValue: string;
             contextVariable: string[];
         };
+        jexlFilters: {
+            type: string;
+            description: string;
+            defaultValue: never[];
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "2.11.0",
+  "version": "2.11.2",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -39,6 +39,7 @@
     "@floating-ui/react": "^0.26.3",
     "@gmod/bbi": "^4.0.0",
     "@mui/icons-material": "^5.0.2",
+    "@mui/x-data-grid": "^7.0.0",
     "clone": "^2.1.2",
     "d3-color": "^3.0.2",
     "d3-scale": "^3.0.2",
@@ -52,7 +53,6 @@
     "@jbrowse/plugin-data-management": "^2.0.0",
     "@jbrowse/plugin-linear-genome-view": "^2.0.0",
     "@mui/material": "^5.0.0",
-    "@mui/x-data-grid": "^7.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
@@ -66,5 +66,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "3d43a820b9274a6160aa4dc15616147f390d9094"
+  "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
 }

package/dist/MultiWiggleAddTrackWidget/index.d.ts

@@ -1,3 +0,0 @@
-import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pm: PluginManager) => void;
-export default _default;

package/esm/MultiWiggleAddTrackWidget/index.d.ts

@@ -1,3 +0,0 @@
-import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pm: PluginManager) => void;
-export default _default;