@jbrowse/plugin-wiggle 2.11.0 → 2.11.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. package/dist/BigWigAdapter/index.d.ts +1 -2
  2. package/dist/BigWigAdapter/index.js +3 -2
  3. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  4. package/dist/CreateMultiWiggleExtension/index.js +2 -2
  5. package/dist/DensityRenderer/index.d.ts +1 -2
  6. package/dist/DensityRenderer/index.js +3 -2
  7. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +2 -1
  8. package/dist/LinePlotRenderer/LinePlotRenderer.js +6 -1
  9. package/dist/LinePlotRenderer/index.d.ts +1 -2
  10. package/dist/LinePlotRenderer/index.js +3 -2
  11. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
  12. package/dist/LinearWiggleDisplay/index.d.ts +1 -2
  13. package/dist/LinearWiggleDisplay/index.js +3 -2
  14. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +8 -1
  15. package/dist/LinearWiggleDisplay/models/model.d.ts +6 -0
  16. package/dist/MultiDensityRenderer/index.d.ts +1 -2
  17. package/dist/MultiDensityRenderer/index.js +3 -2
  18. package/dist/MultiLineRenderer/index.d.ts +1 -2
  19. package/dist/MultiLineRenderer/index.js +3 -2
  20. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -1
  21. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -2
  22. package/dist/MultiLinearWiggleDisplay/index.js +3 -2
  23. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +8 -1
  24. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +9 -1
  25. package/dist/MultiQuantitativeTrack/index.d.ts +1 -2
  26. package/dist/MultiQuantitativeTrack/index.js +3 -2
  27. package/dist/MultiRowLineRenderer/index.d.ts +1 -2
  28. package/dist/MultiRowLineRenderer/index.js +3 -2
  29. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -2
  30. package/dist/MultiRowXYPlotRenderer/index.js +3 -2
  31. package/dist/MultiWiggleAdapter/index.d.ts +1 -2
  32. package/dist/MultiWiggleAdapter/index.js +3 -2
  33. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +2 -0
  34. package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/index.js +3 -2
  35. package/dist/MultiXYPlotRenderer/index.d.ts +1 -2
  36. package/dist/MultiXYPlotRenderer/index.js +3 -2
  37. package/dist/QuantitativeTrack/index.d.ts +1 -2
  38. package/dist/QuantitativeTrack/index.js +3 -2
  39. package/dist/Tooltip.js +1 -0
  40. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +1 -1
  41. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -5
  42. package/dist/XYPlotRenderer/index.d.ts +1 -2
  43. package/dist/XYPlotRenderer/index.js +3 -2
  44. package/dist/index.d.ts +12 -0
  45. package/dist/index.js +2 -2
  46. package/dist/shared/configShared.d.ts +8 -1
  47. package/dist/shared/modelShared.d.ts +25 -10
  48. package/esm/BigWigAdapter/index.d.ts +1 -2
  49. package/esm/BigWigAdapter/index.js +2 -2
  50. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  51. package/esm/CreateMultiWiggleExtension/index.js +1 -1
  52. package/esm/DensityRenderer/index.d.ts +1 -2
  53. package/esm/DensityRenderer/index.js +2 -2
  54. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +2 -1
  55. package/esm/LinePlotRenderer/LinePlotRenderer.js +6 -1
  56. package/esm/LinePlotRenderer/index.d.ts +1 -2
  57. package/esm/LinePlotRenderer/index.js +2 -2
  58. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +2 -2
  59. package/esm/LinearWiggleDisplay/index.d.ts +1 -2
  60. package/esm/LinearWiggleDisplay/index.js +2 -2
  61. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +8 -1
  62. package/esm/LinearWiggleDisplay/models/model.d.ts +6 -0
  63. package/esm/MultiDensityRenderer/index.d.ts +1 -2
  64. package/esm/MultiDensityRenderer/index.js +2 -2
  65. package/esm/MultiLineRenderer/index.d.ts +1 -2
  66. package/esm/MultiLineRenderer/index.js +2 -2
  67. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -1
  68. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -2
  69. package/esm/MultiLinearWiggleDisplay/index.js +2 -2
  70. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +8 -1
  71. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +9 -1
  72. package/esm/MultiQuantitativeTrack/index.d.ts +1 -2
  73. package/esm/MultiQuantitativeTrack/index.js +2 -2
  74. package/esm/MultiRowLineRenderer/index.d.ts +1 -2
  75. package/esm/MultiRowLineRenderer/index.js +2 -2
  76. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -2
  77. package/esm/MultiRowXYPlotRenderer/index.js +2 -2
  78. package/esm/MultiWiggleAdapter/index.d.ts +1 -2
  79. package/esm/MultiWiggleAdapter/index.js +2 -2
  80. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +2 -0
  81. package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/index.js +2 -2
  82. package/esm/MultiXYPlotRenderer/index.d.ts +1 -2
  83. package/esm/MultiXYPlotRenderer/index.js +2 -2
  84. package/esm/QuantitativeTrack/index.d.ts +1 -2
  85. package/esm/QuantitativeTrack/index.js +2 -2
  86. package/esm/Tooltip.js +1 -0
  87. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +1 -1
  88. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -5
  89. package/esm/XYPlotRenderer/index.d.ts +1 -2
  90. package/esm/XYPlotRenderer/index.js +2 -2
  91. package/esm/index.d.ts +12 -0
  92. package/esm/index.js +2 -2
  93. package/esm/shared/configShared.d.ts +8 -1
  94. package/esm/shared/modelShared.d.ts +25 -10
  95. package/package.json +3 -3
  96. package/dist/MultiWiggleAddTrackWidget/index.d.ts +0 -3
  97. package/esm/MultiWiggleAddTrackWidget/index.d.ts +0 -3
  98. /package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.d.ts +0 -0
  99. /package/dist/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.js +0 -0
  100. /package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.d.ts +0 -0
  101. /package/esm/{MultiWiggleAddTrackWidget → MultiWiggleAddTrackWorkflow}/AddTrackWorkflow.js +0 -0
@@ -71,7 +71,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
71
71
  fetchSizeLimit: {
72
72
  type: string;
73
73
  defaultValue: number;
74
- description: string;
74
+ description: string; /**
75
+ * #slot
76
+ */
75
77
  };
76
78
  height: {
77
79
  type: string;
@@ -84,4 +86,9 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
84
86
  defaultValue: string;
85
87
  contextVariable: string[];
86
88
  };
89
+ jexlFilters: {
90
+ type: string;
91
+ description: string;
92
+ defaultValue: never[];
93
+ };
87
94
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
@@ -76,7 +76,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
76
76
  fetchSizeLimit: {
77
77
  type: string;
78
78
  defaultValue: number;
79
- description: string;
79
+ description: string; /**
80
+ * #property
81
+ */
80
82
  };
81
83
  height: {
82
84
  type: string;
@@ -89,6 +91,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
89
91
  defaultValue: string;
90
92
  contextVariable: string[];
91
93
  };
94
+ jexlFilters: {
95
+ type: string;
96
+ description: string;
97
+ defaultValue: never[];
98
+ };
92
99
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
93
100
  } & {
94
101
  /**
@@ -268,13 +275,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
268
275
  readonly featureUnderMouse: Feature | undefined;
269
276
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
270
277
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
278
+ /**
279
+ * #action
280
+ */
271
281
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
272
282
  } & {
273
283
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
274
284
  deleteBlock(key: string): void;
275
- selectFeature(feature: Feature): void; /**
276
- * #getter
277
- */
285
+ selectFeature(feature: Feature): void;
286
+ navToFeature(feature: Feature): void;
278
287
  clearFeatureSelection(): void;
279
288
  setFeatureIdUnderMouse(feature?: string | undefined): void;
280
289
  setContextMenuFeature(feature?: Feature | undefined): void;
@@ -283,12 +292,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
283
292
  } & {
284
293
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
285
294
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
286
- renderProps(): any; /**
287
- * #getter
288
- */
295
+ renderProps(): any;
289
296
  } & {
290
- renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>; /**
291
- * #getter
297
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
298
+ /**
299
+ * #method
292
300
  */
293
301
  afterAttach(): void;
294
302
  } & {
@@ -563,7 +571,9 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
563
571
  fetchSizeLimit: {
564
572
  type: string;
565
573
  defaultValue: number;
566
- description: string;
574
+ description: string; /**
575
+ * #property
576
+ */
567
577
  };
568
578
  height: {
569
579
  type: string;
@@ -576,6 +586,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
576
586
  defaultValue: string;
577
587
  contextVariable: string[];
578
588
  };
589
+ jexlFilters: {
590
+ type: string;
591
+ description: string;
592
+ defaultValue: never[];
593
+ };
579
594
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
580
595
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
581
596
  type: string;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function BigWigAdapterF(pluginManager: PluginManager): void;
@@ -1,6 +1,6 @@
1
1
  import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
2
2
  import configSchema from './configSchema';
3
- export default (pluginManager) => {
3
+ export default function BigWigAdapterF(pluginManager) {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'BigWigAdapter',
6
6
  displayName: 'BigWig adapter',
@@ -12,4 +12,4 @@ export default (pluginManager) => {
12
12
  ],
13
13
  getAdapterClass: () => import('./BigWigAdapter').then(r => r.default),
14
14
  }));
15
- };
15
+ }
@@ -1,2 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function (pm: PluginManager): void;
2
+ export default function CreateMultiWiggleExtensionF(pm: PluginManager): void;
@@ -2,7 +2,7 @@ import { lazy } from 'react';
2
2
  import { readConfObject } from '@jbrowse/core/configuration';
3
3
  import { getSession, isSessionWithAddTracks } from '@jbrowse/core/util';
4
4
  const ConfirmDialog = lazy(() => import('./ConfirmDialog'));
5
- export default function (pm) {
5
+ export default function CreateMultiWiggleExtensionF(pm) {
6
6
  pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
7
7
  const { session } = props;
8
8
  return [
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function DensityRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import DensityRenderer from './DensityRenderer';
3
3
  import ReactComponent from '../WiggleRendering';
4
- export default (pluginManager) => {
4
+ export default function DensityRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new DensityRenderer({
6
6
  name: 'DensityRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,6 +1,7 @@
1
+ import { Feature } from '@jbrowse/core/util';
1
2
  import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
2
3
  export default class LinePlotRenderer extends WiggleBaseRenderer {
3
4
  draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
4
- reducedFeatures: import("@jbrowse/core/util").Feature[];
5
+ reducedFeatures: Feature[];
5
6
  }>;
6
7
  }
@@ -1,12 +1,17 @@
1
+ import { readConfObject } from '@jbrowse/core/configuration';
1
2
  import WiggleBaseRenderer from '../WiggleBaseRenderer';
2
3
  import { YSCALEBAR_LABEL_OFFSET } from '../util';
3
4
  import { drawLine } from '../drawLine';
4
5
  export default class LinePlotRenderer extends WiggleBaseRenderer {
5
6
  async draw(ctx, props) {
7
+ const { config } = props;
8
+ const c = readConfObject(config, 'color');
6
9
  return drawLine(ctx, {
7
10
  ...props,
8
11
  offset: YSCALEBAR_LABEL_OFFSET,
9
- colorCallback: () => 'grey',
12
+ colorCallback: c === '#f0f'
13
+ ? () => 'grey'
14
+ : (feature) => readConfObject(config, 'color', { feature }),
10
15
  });
11
16
  }
12
17
  }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinePlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import ReactComponent from '../WiggleRendering';
3
3
  import LinePlotRenderer from './LinePlotRenderer';
4
- export default (pluginManager) => {
4
+ export default function LinePlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new LinePlotRenderer({
6
6
  name: 'LinePlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -8,8 +8,8 @@ const SetColorDialog = observer(function SetColorDialog({ model, handleClose, })
8
8
  return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set color" },
9
9
  React.createElement(DialogContent, null,
10
10
  React.createElement(Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
11
- React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: 'Overall color' }),
12
- React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
11
+ React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: "Overall color" }),
12
+ React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: "Positive/negative color" }),
13
13
  posneg ? (React.createElement(React.Fragment, null,
14
14
  React.createElement(Typography, null, "Positive color"),
15
15
  React.createElement(ColorPicker, { color: model.posColor || 'black', onChange: event => {
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function LinearWiggleDisplayF(pluginManager: PluginManager): void;
4
3
  export { default as Tooltip } from './components/Tooltip';
5
4
  export { default as ReactComponent } from './components/WiggleDisplayComponent';
6
5
  export { default as modelFactory } from './models/model';
@@ -2,7 +2,7 @@ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
2
2
  import configSchemaFactory from './models/configSchema';
3
3
  import modelFactory from './models/model';
4
4
  import { lazy } from 'react';
5
- export default (pluginManager) => {
5
+ export default function LinearWiggleDisplayF(pluginManager) {
6
6
  pluginManager.addDisplayType(() => {
7
7
  const configSchema = configSchemaFactory(pluginManager);
8
8
  const stateModel = modelFactory(pluginManager, configSchema);
@@ -16,7 +16,7 @@ export default (pluginManager) => {
16
16
  ReactComponent: lazy(() => import('./components/WiggleDisplayComponent')),
17
17
  });
18
18
  });
19
- };
19
+ }
20
20
  export { default as Tooltip } from './components/Tooltip';
21
21
  export { default as ReactComponent } from './components/WiggleDisplayComponent';
22
22
  export { default as modelFactory } from './models/model';
@@ -69,7 +69,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
69
69
  type: string;
70
70
  defaultValue: number;
71
71
  description: string;
72
- };
72
+ }; /**
73
+ * #slot
74
+ */
73
75
  height: {
74
76
  type: string;
75
77
  defaultValue: number;
@@ -81,4 +83,9 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
81
83
  defaultValue: string;
82
84
  contextVariable: string[];
83
85
  };
86
+ jexlFilters: {
87
+ type: string;
88
+ description: string;
89
+ defaultValue: never[];
90
+ };
84
91
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
@@ -95,6 +95,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
95
95
  defaultValue: string;
96
96
  contextVariable: string[];
97
97
  };
98
+ jexlFilters: {
99
+ type: string;
100
+ description: string;
101
+ defaultValue: never[];
102
+ };
98
103
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
99
104
  } & {
100
105
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -235,6 +240,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
235
240
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
236
241
  deleteBlock(key: string): void;
237
242
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
243
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
238
244
  clearFeatureSelection(): void;
239
245
  setFeatureIdUnderMouse(feature?: string | undefined): void;
240
246
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiDensityRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import configSchema from './configSchema';
2
2
  import ReactComponent from '../MultiWiggleRendering';
3
3
  import MultiDensityRenderer from './MultiDensityRenderer';
4
- export default (pluginManager) => {
4
+ export default function MultiDensityRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiDensityRenderer({
6
6
  name: 'MultiDensityRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLineRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiLineRenderer from './MultiLineRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiLineRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiLineRenderer({
6
6
  name: 'MultiLineRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,6 +1,7 @@
1
+ import { getFillProps } from '@jbrowse/core/util';
1
2
  import React from 'react';
2
3
  const RectBg = (props) => {
3
4
  const { color = 'rgb(255,255,255,0.8)' } = props;
4
- return React.createElement("rect", { ...props, fill: color });
5
+ return React.createElement("rect", { ...props, ...getFillProps(color) });
5
6
  };
6
7
  export default RectBg;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiLinearWiggleDisplayF(pluginManager: PluginManager): void;
@@ -2,7 +2,7 @@ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
2
2
  import configSchemaFactory from './models/configSchema';
3
3
  import modelFactory from './models/model';
4
4
  import { lazy } from 'react';
5
- export default (pluginManager) => {
5
+ export default function MultiLinearWiggleDisplayF(pluginManager) {
6
6
  pluginManager.addDisplayType(() => {
7
7
  const configSchema = configSchemaFactory(pluginManager);
8
8
  return new DisplayType({
@@ -15,4 +15,4 @@ export default (pluginManager) => {
15
15
  ReactComponent: lazy(() => import('./components/WiggleDisplayComponent')),
16
16
  });
17
17
  });
18
- };
18
+ }
@@ -78,11 +78,18 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
78
78
  type: string;
79
79
  defaultValue: number;
80
80
  description: string;
81
- };
81
+ }; /**
82
+ * #slot
83
+ */
82
84
  mouseover: {
83
85
  type: string;
84
86
  description: string;
85
87
  defaultValue: string;
86
88
  contextVariable: string[];
87
89
  };
90
+ jexlFilters: {
91
+ type: string;
92
+ description: string;
93
+ defaultValue: never[];
94
+ };
88
95
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
@@ -101,7 +101,14 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
101
101
  defaultValue: string;
102
102
  contextVariable: string[];
103
103
  };
104
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
104
+ jexlFilters: {
105
+ type: string;
106
+ description: string;
107
+ defaultValue: never[];
108
+ };
109
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; /**
110
+ * #action
111
+ */
105
112
  } & {
106
113
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
107
114
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -249,6 +256,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
249
256
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
250
257
  deleteBlock(key: string): void;
251
258
  selectFeature(feature: Feature): void;
259
+ navToFeature(feature: Feature): void;
252
260
  clearFeatureSelection(): void;
253
261
  setFeatureIdUnderMouse(feature?: string | undefined): void;
254
262
  setContextMenuFeature(feature?: Feature | undefined): void;
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
@@ -1,7 +1,7 @@
1
1
  import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
2
2
  import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
3
3
  import configSchemaF from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiQuantitativeTrackF(pluginManager) {
5
5
  pluginManager.addTrackType(() => {
6
6
  const configSchema = configSchemaF(pluginManager);
7
7
  return new TrackType({
@@ -11,4 +11,4 @@ export default (pluginManager) => {
11
11
  stateModel: createBaseTrackModel(pluginManager, 'MultiQuantitativeTrack', configSchema),
12
12
  });
13
13
  });
14
- };
14
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowLineRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiRowLineRenderer from './MultiRowLineRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiRowLineRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiRowLineRenderer({
6
6
  name: 'MultiRowLineRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiRowXYPlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiRowXYPlotRenderer from './MultiRowXYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiRowXYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiRowXYPlotRenderer({
6
6
  name: 'MultiRowXYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;
@@ -1,6 +1,6 @@
1
1
  import configSchema from './configSchema';
2
2
  import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
3
- export default (pluginManager) => {
3
+ export default function MultiWiggleAdapterF(pluginManager) {
4
4
  pluginManager.addAdapterType(() => new AdapterType({
5
5
  name: 'MultiWiggleAdapter',
6
6
  displayName: 'Multi-wiggle adapter',
@@ -15,4 +15,4 @@ export default (pluginManager) => {
15
15
  },
16
16
  getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
17
17
  }));
18
- };
18
+ }
@@ -0,0 +1,2 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;
@@ -2,10 +2,10 @@ import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes';
2
2
  import { types } from 'mobx-state-tree';
3
3
  // locals
4
4
  import { lazy } from 'react';
5
- export default (pm) => {
5
+ export default function MultiWiggleAddTrackWorkflowF(pm) {
6
6
  pm.addAddTrackWorkflowType(() => new AddTrackWorkflowType({
7
7
  name: 'Multi-wiggle track',
8
8
  ReactComponent: lazy(() => import('./AddTrackWorkflow')),
9
9
  stateModel: types.model({}),
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function MultiXYPlotRendererF(pluginManager: PluginManager): void;
@@ -1,11 +1,11 @@
1
1
  import ReactComponent from '../MultiWiggleRendering';
2
2
  import MultiXYPlotRenderer from './MultiXYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function MultiXYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new MultiXYPlotRenderer({
6
6
  name: 'MultiXYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
@@ -1,3 +1,2 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function QuantitativeTrackF(pluginManager: PluginManager): void;
@@ -1,7 +1,7 @@
1
1
  import { createBaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
2
2
  import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
3
3
  import configSchemaF from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function QuantitativeTrackF(pluginManager) {
5
5
  pluginManager.addTrackType(() => {
6
6
  const configSchema = configSchemaF(pluginManager);
7
7
  return new TrackType({
@@ -11,4 +11,4 @@ export default (pluginManager) => {
11
11
  stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
12
12
  });
13
13
  });
14
- };
14
+ }
package/esm/Tooltip.js CHANGED
@@ -39,6 +39,7 @@ const Tooltip = observer(function Tooltip({ model, height, clientMouseCoord, off
39
39
  const { classes } = useStyles();
40
40
  const { refs, floatingStyles, context } = useFloating({
41
41
  placement: 'right',
42
+ strategy: 'fixed',
42
43
  });
43
44
  const x = clientMouseCoord[0] + 5;
44
45
  const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
@@ -16,5 +16,5 @@ export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType
16
16
  headers?: Record<string, string>;
17
17
  regions: Region[];
18
18
  bpPerPx: number;
19
- }, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
19
+ }, rpcDriverClassName: string): Promise<any>;
20
20
  }
@@ -2,7 +2,6 @@ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
2
  import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
3
3
  import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
4
4
  import { renameRegionsIfNeeded } from '@jbrowse/core/util';
5
- import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
6
5
  export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
7
6
  constructor() {
8
7
  super(...arguments);
@@ -38,9 +37,7 @@ export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
38
37
  const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
39
38
  const { regions, adapterConfig, sessionId } = deserializedArgs;
40
39
  const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
41
- if (dataAdapter instanceof BaseFeatureDataAdapter) {
42
- return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
43
- }
44
- throw new Error('Data adapter not found');
40
+ // @ts-expect-error
41
+ return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
45
42
  }
46
43
  }
@@ -1,6 +1,5 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- declare const _default: (pluginManager: PluginManager) => void;
3
- export default _default;
2
+ export default function XYPlotRendererF(pluginManager: PluginManager): void;
4
3
  export { default as XYPlotRenderer } from './XYPlotRenderer';
5
4
  export { default as ReactComponent } from '../WiggleRendering';
6
5
  export { default as configSchema } from './configSchema';
@@ -1,14 +1,14 @@
1
1
  import ReactComponent from '../WiggleRendering';
2
2
  import XYPlotRenderer from './XYPlotRenderer';
3
3
  import configSchema from './configSchema';
4
- export default (pluginManager) => {
4
+ export default function XYPlotRendererF(pluginManager) {
5
5
  pluginManager.addRendererType(() => new XYPlotRenderer({
6
6
  name: 'XYPlotRenderer',
7
7
  ReactComponent,
8
8
  configSchema,
9
9
  pluginManager,
10
10
  }));
11
- };
11
+ }
12
12
  export { default as XYPlotRenderer } from './XYPlotRenderer';
13
13
  export { default as ReactComponent } from '../WiggleRendering';
14
14
  export { default as configSchema } from './configSchema';