@jbrowse/plugin-variants 1.7.0 → 1.7.4

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Files changed (50) hide show
  1. package/dist/ChordVariantDisplay/index.d.ts +3 -3
  2. package/dist/ChordVariantDisplay/index.js +3 -3
  3. package/dist/ChordVariantDisplay/models/ChordVariantDisplay.d.ts +5 -5
  4. package/dist/ChordVariantDisplay/models/ChordVariantDisplay.js +3 -3
  5. package/dist/LinearVariantDisplay/configSchema.d.ts +5 -5
  6. package/dist/LinearVariantDisplay/configSchema.test.js +12 -12
  7. package/dist/LinearVariantDisplay/index.d.ts +2 -2
  8. package/dist/LinearVariantDisplay/index.js +1 -1
  9. package/dist/LinearVariantDisplay/model.d.ts +207 -207
  10. package/dist/LinearVariantDisplay/model.js +3 -3
  11. package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +24 -24
  12. package/dist/StructuralVariantChordRenderer/ReactComponent.js +17 -17
  13. package/dist/StructuralVariantChordRenderer/index.d.ts +3 -3
  14. package/dist/StructuralVariantChordRenderer/index.js +4 -4
  15. package/dist/VariantFeatureWidget/BreakendOptionDialog.d.ts +10 -10
  16. package/dist/VariantFeatureWidget/BreakendOptionDialog.js +13 -13
  17. package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +4 -4
  18. package/dist/VariantFeatureWidget/VariantFeatureWidget.js +32 -32
  19. package/dist/VariantFeatureWidget/VariantFeatureWidget.test.js +2 -2
  20. package/dist/VariantFeatureWidget/index.d.ts +11 -11
  21. package/dist/VcfAdapter/VcfAdapter.d.ts +24 -24
  22. package/dist/VcfAdapter/VcfAdapter.js +26 -26
  23. package/dist/VcfAdapter/VcfAdapter.test.js +3 -3
  24. package/dist/VcfAdapter/configSchema.d.ts +2 -2
  25. package/dist/VcfAdapter/configSchema.js +2 -2
  26. package/dist/VcfAdapter/index.d.ts +1 -1
  27. package/dist/VcfAdapter/index.js +1 -1
  28. package/dist/VcfTabixAdapter/VcfFeature.d.ts +59 -59
  29. package/dist/VcfTabixAdapter/VcfFeature.js +19 -19
  30. package/dist/VcfTabixAdapter/VcfFeature.test.js +14 -14
  31. package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +35 -35
  32. package/dist/VcfTabixAdapter/VcfTabixAdapter.js +26 -26
  33. package/dist/VcfTabixAdapter/VcfTabixAdapter.test.js +4 -4
  34. package/dist/VcfTabixAdapter/configSchema.d.ts +2 -2
  35. package/dist/VcfTabixAdapter/configSchema.js +2 -2
  36. package/dist/VcfTabixAdapter/index.d.ts +1 -1
  37. package/dist/VcfTabixAdapter/index.js +1 -1
  38. package/dist/index.d.ts +7 -7
  39. package/dist/index.js +19 -19
  40. package/dist/index.test.js +2 -2
  41. package/package.json +5 -3
  42. package/dist/LinearVariantDisplay/configSchema.test.d.ts +0 -1
  43. package/dist/VariantFeatureWidget/VariantFeatureWidget.test.d.ts +0 -1
  44. package/dist/index.test.d.ts +0 -1
  45. package/dist/plugin-variants.cjs.development.js +0 -2897
  46. package/dist/plugin-variants.cjs.development.js.map +0 -1
  47. package/dist/plugin-variants.cjs.production.min.js +0 -2
  48. package/dist/plugin-variants.cjs.production.min.js.map +0 -1
  49. package/dist/plugin-variants.esm.js +0 -2889
  50. package/dist/plugin-variants.esm.js.map +0 -1
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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@@ -45,37 +45,37 @@ var _VcfFeature = _interopRequireDefault(require("./VcfFeature"));
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  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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  var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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- (0, _inherits2["default"])(_default, _BaseFeatureDataAdapt);
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+ (0, _inherits2.default)(_default, _BaseFeatureDataAdapt);
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  var _super = _createSuper(_default);
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  function _default() {
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  var _this;
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- (0, _classCallCheck2["default"])(this, _default);
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+ (0, _classCallCheck2.default)(this, _default);
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  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
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  args[_key] = arguments[_key];
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  }
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  _this = _super.call.apply(_super, [this].concat(args));
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "configured", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configured", void 0);
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  return _this;
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  }
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- (0, _createClass2["default"])(_default, [{
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+ (0, _createClass2.default)(_default, [{
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  key: "configurePre",
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  value: function () {
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- var _configurePre = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ var _configurePre = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var vcfGzLocation, location, indexType, filehandle, isCSI, vcf, header;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -99,7 +99,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  return _context.abrupt("return", {
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  filehandle: filehandle,
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  vcf: vcf,
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- parser: new _vcf["default"]({
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+ parser: new _vcf.default({
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  header: header
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  })
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  });
@@ -121,15 +121,15 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "configure",
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  value: function () {
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- var _configure = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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+ var _configure = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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  var _this2 = this;
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
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  if (!this.configured) {
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- this.configured = this.configurePre()["catch"](function (e) {
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+ this.configured = this.configurePre().catch(function (e) {
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  _this2.configured = undefined;
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  throw e;
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  });
@@ -154,13 +154,13 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getRefNames",
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  value: function () {
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- var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
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+ var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
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  var opts,
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  _yield$this$configure,
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  vcf,
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  _args3 = arguments;
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- return _regenerator["default"].wrap(function _callee3$(_context3) {
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+ return _regenerator.default.wrap(function _callee3$(_context3) {
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  while (1) {
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  switch (_context3.prev = _context3.next) {
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  case 0:
@@ -190,10 +190,10 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getHeader",
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  value: function () {
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- var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4() {
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+ var _getHeader = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
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  var _yield$this$configure2, vcf;
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- return _regenerator["default"].wrap(function _callee4$(_context4) {
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+ return _regenerator.default.wrap(function _callee4$(_context4) {
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  while (1) {
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  switch (_context4.prev = _context4.next) {
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  case 0:
@@ -222,10 +222,10 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  }, {
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  key: "getMetadata",
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  value: function () {
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- var _getMetadata = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5() {
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+ var _getMetadata = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
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  var _yield$this$configure3, parser;
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- return _regenerator["default"].wrap(function _callee5$(_context5) {
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+ return _regenerator.default.wrap(function _callee5$(_context5) {
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  while (1) {
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  switch (_context5.prev = _context5.next) {
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  case 0:
@@ -258,10 +258,10 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
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  return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
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- var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(observer) {
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+ var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(observer) {
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  var refName, start, end, _yield$_this3$configu, vcf, parser;
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- return _regenerator["default"].wrap(function _callee6$(_context6) {
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+ return _regenerator.default.wrap(function _callee6$(_context6) {
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  while (1) {
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  switch (_context6.prev = _context6.next) {
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  case 0:
@@ -276,7 +276,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  _context6.next = 8;
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  return vcf.getLines(refName, start, end, _objectSpread({
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  lineCallback: function lineCallback(line, fileOffset) {
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- observer.next(new _VcfFeature["default"]({
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+ observer.next(new _VcfFeature.default({
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  variant: parser.parseLine(line),
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  parser: parser,
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  id: "".concat(_this3.id, "-vcf-").concat(fileOffset)
@@ -323,12 +323,12 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
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  // TODO: restore commented version below once TSDX supports Rollup v2
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  // xref: https://github.com/rollup/rollup/blob/master/CHANGELOG.md#bug-fixes-45
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- var superGetFeaturesInMultipleRegions = (0, _get2["default"])((0, _getPrototypeOf2["default"])(_default.prototype), "getFeaturesInMultipleRegions", this);
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+ var superGetFeaturesInMultipleRegions = (0, _get2.default)((0, _getPrototypeOf2.default)(_default.prototype), "getFeaturesInMultipleRegions", this);
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  return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
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- var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee7(observer) {
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+ var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7(observer) {
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  var _yield$_this4$configu, vcf, bytes, _yield$_this4$configu2, filehandle, stat, pct;
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- return _regenerator["default"].wrap(function _callee7$(_context7) {
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+ return _regenerator.default.wrap(function _callee7$(_context7) {
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  while (1) {
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  switch (_context7.prev = _context7.next) {
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  case 0:
@@ -389,4 +389,4 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
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  return _default;
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  }(_BaseAdapter.BaseFeatureDataAdapter);
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+ exports.default = _default;
@@ -12,13 +12,13 @@ var _VcfTabixAdapter = _interopRequireDefault(require("./VcfTabixAdapter"));
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- test('adapter can fetch variants from volvox.vcf.gz', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ test('adapter can fetch variants from volvox.vcf.gz', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var adapter, csiAdapter, csiFeatures, names, csiNames, features, featuresArray, csiFeaturesArray, featuresNonExist, featuresArrayNonExist;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
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- adapter = new _VcfTabixAdapter["default"](_configSchema["default"].create({
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+ adapter = new _VcfTabixAdapter.default(_configSchema.default.create({
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  vcfGzLocation: {
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  localPath: require.resolve('./test_data/volvox.filtered.vcf.gz'),
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  locationType: 'LocalPathLocation'
@@ -31,7 +31,7 @@ test('adapter can fetch variants from volvox.vcf.gz', /*#__PURE__*/(0, _asyncToG
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  }
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  }
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  }));
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- csiAdapter = new _VcfTabixAdapter["default"](_configSchema["default"].create({
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+ csiAdapter = new _VcfTabixAdapter.default(_configSchema.default.create({
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  vcfGzLocation: {
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  localPath: require.resolve('./test_data/volvox.filtered.vcf.gz'),
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  locationType: 'LocalPathLocation'
@@ -1,2 +1,2 @@
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- declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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- export default _default;
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+ declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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+ export default _default;
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _mobxStateTree = require("mobx-state-tree");
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@@ -35,4 +35,4 @@ var _default = (0, _configuration.ConfigurationSchema)('VcfTabixAdapter', {
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  explicitlyTyped: true
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  });
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+ exports.default = _default;
@@ -1 +1 @@
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- export { default as configSchema } from './configSchema';
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+ export { default as configSchema } from './configSchema';
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "configSchema", {
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  enumerable: true,
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  get: function get() {
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- return _configSchema["default"];
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+ return _configSchema.default;
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  }
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  });
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package/dist/index.d.ts CHANGED
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- import Plugin from '@jbrowse/core/Plugin';
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- import PluginManager from '@jbrowse/core/PluginManager';
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- export default class VariantsPlugin extends Plugin {
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- name: string;
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- install(pluginManager: PluginManager): void;
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- }
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- export { default as VcfFeature } from './VcfTabixAdapter/VcfFeature';
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+ import Plugin from '@jbrowse/core/Plugin';
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+ import PluginManager from '@jbrowse/core/PluginManager';
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+ export default class VariantsPlugin extends Plugin {
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+ name: string;
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+ install(pluginManager: PluginManager): void;
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+ }
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+ export { default as VcfFeature } from './VcfTabixAdapter/VcfFeature';
package/dist/index.js CHANGED
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  Object.defineProperty(exports, "VcfFeature", {
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  enumerable: true,
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- return _VcfFeature["default"];
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+ return _VcfFeature.default;
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+ exports.default = void 0;
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@@ -65,43 +65,43 @@ var _VcfFeature = _interopRequireDefault(require("./VcfTabixAdapter/VcfFeature")
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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- (0, _inherits2["default"])(VariantsPlugin, _Plugin);
75
+ (0, _inherits2.default)(VariantsPlugin, _Plugin);
76
76
 
77
77
  var _super = _createSuper(VariantsPlugin);
78
78
 
79
79
  function VariantsPlugin() {
80
80
  var _this;
81
81
 
82
- (0, _classCallCheck2["default"])(this, VariantsPlugin);
82
+ (0, _classCallCheck2.default)(this, VariantsPlugin);
83
83
 
84
84
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
85
85
  args[_key] = arguments[_key];
86
86
  }
87
87
 
88
88
  _this = _super.call.apply(_super, [this].concat(args));
89
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'VariantsPlugin');
89
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'VariantsPlugin');
90
90
  return _this;
91
91
  }
92
92
 
93
- (0, _createClass2["default"])(VariantsPlugin, [{
93
+ (0, _createClass2.default)(VariantsPlugin, [{
94
94
  key: "install",
95
95
  value: function install(pluginManager) {
96
96
  pluginManager.addAdapterType(function () {
97
- return new _AdapterType["default"]({
97
+ return new _AdapterType.default({
98
98
  name: 'VcfTabixAdapter',
99
99
  configSchema: _VcfTabixAdapter.configSchema,
100
100
  getAdapterClass: function getAdapterClass() {
101
101
  return Promise.resolve().then(function () {
102
102
  return _interopRequireWildcard(require('./VcfTabixAdapter/VcfTabixAdapter'));
103
103
  }).then(function (r) {
104
- return r["default"];
104
+ return r.default;
105
105
  });
106
106
  }
107
107
  });
@@ -140,14 +140,14 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
140
140
  };
141
141
  });
142
142
  pluginManager.addAdapterType(function () {
143
- return new _AdapterType["default"]({
143
+ return new _AdapterType.default({
144
144
  name: 'VcfAdapter',
145
145
  configSchema: _VcfAdapter.configSchema,
146
146
  getAdapterClass: function getAdapterClass() {
147
147
  return Promise.resolve().then(function () {
148
148
  return _interopRequireWildcard(require('./VcfAdapter/VcfAdapter'));
149
149
  }).then(function (r) {
150
- return r["default"];
150
+ return r.default;
151
151
  });
152
152
  }
153
153
  });
@@ -169,24 +169,24 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
169
169
  };
170
170
  });
171
171
  pluginManager.addRendererType(function () {
172
- return pluginManager.jbrequire(_StructuralVariantChordRenderer["default"]);
172
+ return pluginManager.jbrequire(_StructuralVariantChordRenderer.default);
173
173
  });
174
174
  pluginManager.addTrackType(function () {
175
175
  var configSchema = (0, _configuration.ConfigurationSchema)('VariantTrack', {}, {
176
176
  baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager)
177
177
  });
178
- return new _TrackType["default"]({
178
+ return new _TrackType.default({
179
179
  name: 'VariantTrack',
180
180
  configSchema: configSchema,
181
181
  stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'VariantTrack', configSchema)
182
182
  });
183
183
  });
184
184
  pluginManager.addDisplayType(function () {
185
- return pluginManager.jbrequire(_ChordVariantDisplay["default"]);
185
+ return pluginManager.jbrequire(_ChordVariantDisplay.default);
186
186
  });
187
187
  pluginManager.addDisplayType(function () {
188
188
  var configSchema = (0, _LinearVariantDisplay.configSchemaFactory)(pluginManager);
189
- return new _DisplayType["default"]({
189
+ return new _DisplayType.default({
190
190
  name: 'LinearVariantDisplay',
191
191
  configSchema: configSchema,
192
192
  stateModel: (0, _LinearVariantDisplay.modelFactory)(configSchema),
@@ -196,7 +196,7 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
196
196
  });
197
197
  });
198
198
  pluginManager.addWidgetType(function () {
199
- return new _WidgetType["default"]({
199
+ return new _WidgetType.default({
200
200
  name: 'VariantFeatureWidget',
201
201
  heading: 'Feature details',
202
202
  configSchema: _VariantFeatureWidget.configSchema,
@@ -211,6 +211,6 @@ var VariantsPlugin = /*#__PURE__*/function (_Plugin) {
211
211
  }
212
212
  }]);
213
213
  return VariantsPlugin;
214
- }(_Plugin2["default"]);
214
+ }(_Plugin2.default);
215
215
 
216
- exports["default"] = VariantsPlugin;
216
+ exports.default = VariantsPlugin;
@@ -14,11 +14,11 @@ var _ = _interopRequireDefault(require("."));
14
14
 
15
15
  test('plugin in a stock JBrowse', function () {
16
16
  console.warn = jest.fn();
17
- var pluginManager = new _PluginManager["default"]([new _["default"](), new _pluginAlignments["default"](), new _pluginSvg["default"]()]);
17
+ var pluginManager = new _PluginManager.default([new _.default(), new _pluginAlignments.default(), new _pluginSvg.default()]);
18
18
  pluginManager.createPluggableElements();
19
19
  pluginManager.configure();
20
20
  expect(function () {
21
- return pluginManager.addPlugin(new _["default"]());
21
+ return pluginManager.addPlugin(new _.default());
22
22
  }).toThrow(/JBrowse already configured, cannot add plugins/);
23
23
  var VcfTabixAdapter = pluginManager.getAdapterType('VcfTabixAdapter');
24
24
  var config = VcfTabixAdapter.configSchema.create({
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-variants",
3
- "version": "1.7.0",
3
+ "version": "1.7.4",
4
4
  "description": "JBrowse 2 variant adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -29,9 +29,11 @@
29
29
  "prepack": "yarn build; yarn useDist",
30
30
  "postpack": "yarn useSrc",
31
31
  "useDist": "node ../../scripts/useDist.js",
32
- "useSrc": "node ../../scripts/useSrc.js"
32
+ "useSrc": "node ../../scripts/useSrc.js",
33
+ "postbuild": "tsc --build tsconfig.build.json"
33
34
  },
34
35
  "dependencies": {
36
+ "@babel/runtime": "^7.17.9",
35
37
  "@flatten-js/interval-tree": "^1.0.15",
36
38
  "@gmod/bgzf-filehandle": "^1.4.3",
37
39
  "@gmod/tabix": "^1.5.2",
@@ -55,5 +57,5 @@
55
57
  "publishConfig": {
56
58
  "access": "public"
57
59
  },
58
- "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
60
+ "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
59
61
  }
@@ -1 +0,0 @@
1
- export {};
@@ -1 +0,0 @@
1
- export {};