@jbrowse/plugin-variants 1.7.0 → 1.7.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ChordVariantDisplay/index.d.ts +3 -3
- package/dist/ChordVariantDisplay/index.js +3 -3
- package/dist/ChordVariantDisplay/models/ChordVariantDisplay.d.ts +5 -5
- package/dist/ChordVariantDisplay/models/ChordVariantDisplay.js +3 -3
- package/dist/LinearVariantDisplay/configSchema.d.ts +5 -5
- package/dist/LinearVariantDisplay/configSchema.test.js +12 -12
- package/dist/LinearVariantDisplay/index.d.ts +2 -2
- package/dist/LinearVariantDisplay/index.js +1 -1
- package/dist/LinearVariantDisplay/model.d.ts +207 -207
- package/dist/LinearVariantDisplay/model.js +3 -3
- package/dist/StructuralVariantChordRenderer/ReactComponent.d.ts +24 -24
- package/dist/StructuralVariantChordRenderer/ReactComponent.js +17 -17
- package/dist/StructuralVariantChordRenderer/index.d.ts +3 -3
- package/dist/StructuralVariantChordRenderer/index.js +4 -4
- package/dist/VariantFeatureWidget/BreakendOptionDialog.d.ts +10 -10
- package/dist/VariantFeatureWidget/BreakendOptionDialog.js +13 -13
- package/dist/VariantFeatureWidget/VariantFeatureWidget.d.ts +4 -4
- package/dist/VariantFeatureWidget/VariantFeatureWidget.js +32 -32
- package/dist/VariantFeatureWidget/VariantFeatureWidget.test.js +2 -2
- package/dist/VariantFeatureWidget/index.d.ts +11 -11
- package/dist/VcfAdapter/VcfAdapter.d.ts +24 -24
- package/dist/VcfAdapter/VcfAdapter.js +26 -26
- package/dist/VcfAdapter/VcfAdapter.test.js +3 -3
- package/dist/VcfAdapter/configSchema.d.ts +2 -2
- package/dist/VcfAdapter/configSchema.js +2 -2
- package/dist/VcfAdapter/index.d.ts +1 -1
- package/dist/VcfAdapter/index.js +1 -1
- package/dist/VcfTabixAdapter/VcfFeature.d.ts +59 -59
- package/dist/VcfTabixAdapter/VcfFeature.js +19 -19
- package/dist/VcfTabixAdapter/VcfFeature.test.js +14 -14
- package/dist/VcfTabixAdapter/VcfTabixAdapter.d.ts +35 -35
- package/dist/VcfTabixAdapter/VcfTabixAdapter.js +26 -26
- package/dist/VcfTabixAdapter/VcfTabixAdapter.test.js +4 -4
- package/dist/VcfTabixAdapter/configSchema.d.ts +2 -2
- package/dist/VcfTabixAdapter/configSchema.js +2 -2
- package/dist/VcfTabixAdapter/index.d.ts +1 -1
- package/dist/VcfTabixAdapter/index.js +1 -1
- package/dist/index.d.ts +7 -7
- package/dist/index.js +19 -19
- package/dist/index.test.js +2 -2
- package/package.json +5 -3
- package/dist/LinearVariantDisplay/configSchema.test.d.ts +0 -1
- package/dist/VariantFeatureWidget/VariantFeatureWidget.test.d.ts +0 -1
- package/dist/index.test.d.ts +0 -1
- package/dist/plugin-variants.cjs.development.js +0 -2897
- package/dist/plugin-variants.cjs.development.js.map +0 -1
- package/dist/plugin-variants.cjs.production.min.js +0 -2
- package/dist/plugin-variants.cjs.production.min.js.map +0 -1
- package/dist/plugin-variants.esm.js +0 -2889
- package/dist/plugin-variants.esm.js.map +0 -1
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@@ -1,3 +1,3 @@
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/pluggableElementTypes").DisplayType;
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export default _default;
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import PluginManager from '@jbrowse/core/PluginManager';
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declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/pluggableElementTypes").DisplayType;
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export default _default;
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports
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exports.default = void 0;
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var _pluginCircularView = require("@jbrowse/plugin-circular-view");
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@@ -16,7 +16,7 @@ var _default = function _default(pluginManager) {
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load = pluginManager.load;
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var DisplayType = lib['@jbrowse/core/pluggableElementTypes/DisplayType'];
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var _load = load(_ChordVariantDisplay
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var _load = load(_ChordVariantDisplay.default),
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stateModel = _load.stateModel,
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configSchema = _load.configSchema;
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});
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};
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exports
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exports.default = _default;
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@@ -1,5 +1,5 @@
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export default ChordVariantDisplayF;
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declare function ChordVariantDisplayF(pluginManager: any): {
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stateModel: any;
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configSchema: any;
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};
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export default ChordVariantDisplayF;
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declare function ChordVariantDisplayF(pluginManager: any): {
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stateModel: any;
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configSchema: any;
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};
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports
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exports.default = void 0;
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var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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@@ -13,7 +13,7 @@ var _pluginCircularView = require("@jbrowse/plugin-circular-view");
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function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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var ChordVariantDisplayF = function ChordVariantDisplayF(pluginManager) {
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var jbrequire = pluginManager.jbrequire;
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@@ -73,4 +73,4 @@ var ChordVariantDisplayF = function ChordVariantDisplayF(pluginManager) {
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var _default = ChordVariantDisplayF;
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exports
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exports.default = _default;
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import { Instance } from 'mobx-state-tree';
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import PluginManager from '@jbrowse/core/PluginManager';
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export declare function LinearVariantDisplayConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare type LinearVariantDisplayConfigModel = ReturnType<typeof LinearVariantDisplayConfigFactory>;
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export declare type LinearVariantDisplayConfig = Instance<LinearVariantDisplayConfigModel>;
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import { Instance } from 'mobx-state-tree';
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import PluginManager from '@jbrowse/core/PluginManager';
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export declare function LinearVariantDisplayConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare type LinearVariantDisplayConfigModel = ReturnType<typeof LinearVariantDisplayConfigFactory>;
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export declare type LinearVariantDisplayConfig = Instance<LinearVariantDisplayConfigModel>;
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@@ -24,7 +24,7 @@ var _SvgFeatureRenderer = require("@jbrowse/plugin-svg/src/SvgFeatureRenderer");
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var _configSchema = require("./configSchema");
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2
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function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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});
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var PileupRendererPlugin = /*#__PURE__*/function (_Plugin) {
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(0, _inherits2
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(0, _inherits2.default)(PileupRendererPlugin, _Plugin);
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var _super = _createSuper(PileupRendererPlugin);
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function PileupRendererPlugin() {
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(0, _classCallCheck2
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(0, _classCallCheck2.default)(this, PileupRendererPlugin);
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return _super.apply(this, arguments);
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}
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(0, _createClass2.default)(PileupRendererPlugin, [{
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(0, _PileupRenderer
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(0, _PileupRenderer.default)(pluginManager);
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}
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}]);
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return PileupRendererPlugin;
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}(_Plugin3
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}(_Plugin3.default);
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var SvgFeatureRendererPlugin = /*#__PURE__*/function (_Plugin2) {
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(0, _inherits2
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(0, _inherits2.default)(SvgFeatureRendererPlugin, _Plugin2);
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var _super2 = _createSuper(SvgFeatureRendererPlugin);
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function SvgFeatureRendererPlugin() {
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(0, _classCallCheck2
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(0, _classCallCheck2.default)(this, SvgFeatureRendererPlugin);
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}
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(0, _createClass2.default)(SvgFeatureRendererPlugin, [{
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pluginManager.addRendererType(function () {
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return new _BoxRendererType
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return new _BoxRendererType.default({
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name: 'SvgFeatureRenderer',
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}]);
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return SvgFeatureRendererPlugin;
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}(_Plugin3
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}(_Plugin3.default);
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test('has a viewType attr', function () {
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var configSchema = (0, _configSchema.LinearVariantDisplayConfigFactory)(new _PluginManager
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var configSchema = (0, _configSchema.LinearVariantDisplayConfigFactory)(new _PluginManager.default([new PileupRendererPlugin(), new SvgFeatureRendererPlugin()]).createPluggableElements().configure());
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var config = configSchema.create({
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type: 'LinearVariantDisplay',
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export { LinearVariantDisplayConfigFactory as configSchemaFactory } from './configSchema';
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export { LinearVariantDisplayConfigFactory as configSchemaFactory } from './configSchema';
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export { default as modelFactory } from './model';
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/// <reference types="react" />
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import { Feature } from '@jbrowse/core/util/simpleFeature';
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import { LinearVariantDisplayConfigModel } from './configSchema';
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export default function (configSchema: LinearVariantDisplayConfigModel): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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} & {
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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}, {
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, Feature> | undefined;
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status: string;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
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trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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type: import("mobx-state-tree").ISimpleType<"LinearVariantDisplay">;
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configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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}, {
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readonly RenderingComponent: import("react").FC<{
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}> & {
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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}, {
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?: unknown): void;
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reload(): void;
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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} & {
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} & {
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readonly renderDelay: number;
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readonly TooltipComponent: import("react").FC<any>;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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readonly currentBytesRequested: number;
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|
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly estimatedStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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|
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setMessage(message: string): void;
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afterAttach(): void;
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estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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headers?: Record<string, string> | undefined;
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signal?: AbortSignal | undefined;
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filters?: string[] | undefined;
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|
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}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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|
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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|
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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|
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clearRegionStats(): void;
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|
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setHeight(displayHeight: number): number;
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|
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resizeHeight(distance: number): number;
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|
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setScrollTop(scrollTop: number): void;
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|
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updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
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|
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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|
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setCurrBpPerPx(n: number): void;
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|
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deleteBlock(key: string): void;
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|
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selectFeature(feature: Feature): void;
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|
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clearFeatureSelection(): void;
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|
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setFeatureIdUnderMouse(feature: string | undefined): void;
|
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|
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reload(): void;
|
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|
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setContextMenuFeature(feature?: Feature | undefined): void;
|
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|
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} & {
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|
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readonly regionTooLarge: boolean;
|
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|
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readonly regionTooLargeReason: string;
|
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|
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} & {
|
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|
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reload(): Promise<void>;
|
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|
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afterAttach(): void;
|
|
176
|
-
} & {
|
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|
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
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|
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
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|
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
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|
-
contextMenuItems(): {
|
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|
-
label: string;
|
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|
-
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
183
|
-
onClick: () => void;
|
|
184
|
-
}[];
|
|
185
|
-
renderProps(): any;
|
|
186
|
-
} & {
|
|
187
|
-
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
|
|
188
|
-
overrideHeight: number;
|
|
189
|
-
}): Promise<JSX.Element>;
|
|
190
|
-
} & {
|
|
191
|
-
readonly rendererTypeName: any;
|
|
192
|
-
readonly showLabels: any;
|
|
193
|
-
readonly showDescriptions: any;
|
|
194
|
-
readonly maxHeight: any;
|
|
195
|
-
readonly displayMode: any;
|
|
196
|
-
readonly rendererConfig: any;
|
|
197
|
-
} & {
|
|
198
|
-
toggleShowLabels(): void;
|
|
199
|
-
toggleShowDescriptions(): void;
|
|
200
|
-
setDisplayMode(val: string): void;
|
|
201
|
-
setMaxHeight(val: number): void;
|
|
202
|
-
} & {
|
|
203
|
-
renderProps(): any;
|
|
204
|
-
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
205
|
-
} & {
|
|
206
|
-
selectFeature(feature: Feature): Promise<void>;
|
|
207
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { Feature } from '@jbrowse/core/util/simpleFeature';
|
|
3
|
+
import { LinearVariantDisplayConfigModel } from './configSchema';
|
|
4
|
+
export default function (configSchema: LinearVariantDisplayConfigModel): import("mobx-state-tree").IModelType<{
|
|
5
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
6
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
7
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
8
|
+
} & {
|
|
9
|
+
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
10
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
11
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
|
12
|
+
region: import("mobx-state-tree").IModelType<{
|
|
13
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
14
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
15
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
16
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
17
|
+
} & {
|
|
18
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
19
|
+
}, {
|
|
20
|
+
setRefName(newRefName: string): void;
|
|
21
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
22
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
23
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
24
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
25
|
+
}, {
|
|
26
|
+
renderInProgress: AbortController | undefined;
|
|
27
|
+
filled: boolean;
|
|
28
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
29
|
+
features: Map<string, Feature> | undefined;
|
|
30
|
+
layout: any;
|
|
31
|
+
status: string;
|
|
32
|
+
error: unknown;
|
|
33
|
+
message: string | undefined;
|
|
34
|
+
maxHeightReached: boolean;
|
|
35
|
+
ReactComponent: ({ model, }: {
|
|
36
|
+
model: any;
|
|
37
|
+
}) => any;
|
|
38
|
+
renderProps: any;
|
|
39
|
+
} & {
|
|
40
|
+
doReload(): void;
|
|
41
|
+
afterAttach(): void;
|
|
42
|
+
setStatus(message: string): void;
|
|
43
|
+
setLoading(abortController: AbortController): void;
|
|
44
|
+
setMessage(messageText: string): void;
|
|
45
|
+
setRendered(props: {
|
|
46
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
47
|
+
features: Map<string, Feature>;
|
|
48
|
+
layout: any;
|
|
49
|
+
maxHeightReached: boolean;
|
|
50
|
+
renderProps: any;
|
|
51
|
+
} | undefined): void;
|
|
52
|
+
setError(error: unknown): void;
|
|
53
|
+
reload(): void;
|
|
54
|
+
beforeDestroy(): void;
|
|
55
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
56
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
57
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
58
|
+
} & {
|
|
59
|
+
type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
|
|
60
|
+
trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
61
|
+
trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
62
|
+
trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
63
|
+
trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
64
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
65
|
+
} & {
|
|
66
|
+
type: import("mobx-state-tree").ISimpleType<"LinearVariantDisplay">;
|
|
67
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
68
|
+
}, {
|
|
69
|
+
rendererTypeName: string;
|
|
70
|
+
error: unknown;
|
|
71
|
+
} & {
|
|
72
|
+
readonly RenderingComponent: import("react").FC<{
|
|
73
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
74
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
75
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
76
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
77
|
+
}> & {
|
|
78
|
+
rendererTypeName: string;
|
|
79
|
+
error: unknown;
|
|
80
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
81
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
82
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
83
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
84
|
+
}, {
|
|
85
|
+
rendererTypeName: string;
|
|
86
|
+
error: unknown;
|
|
87
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
88
|
+
onHorizontalScroll?: Function | undefined;
|
|
89
|
+
blockState?: Record<string, any> | undefined;
|
|
90
|
+
}>;
|
|
91
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
92
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
93
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
94
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
95
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
96
|
+
}> & {
|
|
97
|
+
rendererTypeName: string;
|
|
98
|
+
error: unknown;
|
|
99
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
100
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
101
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
102
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
103
|
+
}, {
|
|
104
|
+
rendererTypeName: string;
|
|
105
|
+
error: unknown;
|
|
106
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
107
|
+
}> | null;
|
|
108
|
+
readonly adapterConfig: any;
|
|
109
|
+
readonly parentTrack: any;
|
|
110
|
+
renderProps(): any;
|
|
111
|
+
readonly rendererType: any;
|
|
112
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
113
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
114
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
115
|
+
regionCannotBeRendered(): undefined;
|
|
116
|
+
} & {
|
|
117
|
+
setError(error?: unknown): void;
|
|
118
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
119
|
+
reload(): void;
|
|
120
|
+
} & {
|
|
121
|
+
currBpPerPx: number;
|
|
122
|
+
message: string;
|
|
123
|
+
featureIdUnderMouse: string | undefined;
|
|
124
|
+
contextMenuFeature: Feature | undefined;
|
|
125
|
+
scrollTop: number;
|
|
126
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
127
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
128
|
+
} & {
|
|
129
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
130
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
131
|
+
} & {
|
|
132
|
+
readonly renderDelay: number;
|
|
133
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
134
|
+
readonly selectedFeatureId: string | undefined;
|
|
135
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
136
|
+
} & {
|
|
137
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
|
|
138
|
+
readonly featureUnderMouse: Feature | undefined;
|
|
139
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
140
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
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141
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
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142
|
+
readonly currentBytesRequested: number;
|
|
143
|
+
readonly currentFeatureScreenDensity: number;
|
|
144
|
+
readonly maxFeatureScreenDensity: any;
|
|
145
|
+
readonly estimatedStatsReady: boolean;
|
|
146
|
+
readonly maxAllowableBytes: number;
|
|
147
|
+
} & {
|
|
148
|
+
setMessage(message: string): void;
|
|
149
|
+
afterAttach(): void;
|
|
150
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
151
|
+
headers?: Record<string, string> | undefined;
|
|
152
|
+
signal?: AbortSignal | undefined;
|
|
153
|
+
filters?: string[] | undefined;
|
|
154
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
155
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
156
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
157
|
+
clearRegionStats(): void;
|
|
158
|
+
setHeight(displayHeight: number): number;
|
|
159
|
+
resizeHeight(distance: number): number;
|
|
160
|
+
setScrollTop(scrollTop: number): void;
|
|
161
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
162
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
163
|
+
setCurrBpPerPx(n: number): void;
|
|
164
|
+
deleteBlock(key: string): void;
|
|
165
|
+
selectFeature(feature: Feature): void;
|
|
166
|
+
clearFeatureSelection(): void;
|
|
167
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
168
|
+
reload(): void;
|
|
169
|
+
setContextMenuFeature(feature?: Feature | undefined): void;
|
|
170
|
+
} & {
|
|
171
|
+
readonly regionTooLarge: boolean;
|
|
172
|
+
readonly regionTooLargeReason: string;
|
|
173
|
+
} & {
|
|
174
|
+
reload(): Promise<void>;
|
|
175
|
+
afterAttach(): void;
|
|
176
|
+
} & {
|
|
177
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
178
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
179
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
180
|
+
contextMenuItems(): {
|
|
181
|
+
label: string;
|
|
182
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
183
|
+
onClick: () => void;
|
|
184
|
+
}[];
|
|
185
|
+
renderProps(): any;
|
|
186
|
+
} & {
|
|
187
|
+
renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
|
|
188
|
+
overrideHeight: number;
|
|
189
|
+
}): Promise<JSX.Element>;
|
|
190
|
+
} & {
|
|
191
|
+
readonly rendererTypeName: any;
|
|
192
|
+
readonly showLabels: any;
|
|
193
|
+
readonly showDescriptions: any;
|
|
194
|
+
readonly maxHeight: any;
|
|
195
|
+
readonly displayMode: any;
|
|
196
|
+
readonly rendererConfig: any;
|
|
197
|
+
} & {
|
|
198
|
+
toggleShowLabels(): void;
|
|
199
|
+
toggleShowDescriptions(): void;
|
|
200
|
+
setDisplayMode(val: string): void;
|
|
201
|
+
setMaxHeight(val: number): void;
|
|
202
|
+
} & {
|
|
203
|
+
renderProps(): any;
|
|
204
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
205
|
+
} & {
|
|
206
|
+
selectFeature(feature: Feature): Promise<void>;
|
|
207
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
|
|
|
5
5
|
Object.defineProperty(exports, "__esModule", {
|
|
6
6
|
value: true
|
|
7
7
|
});
|
|
8
|
-
exports
|
|
8
|
+
exports.default = _default;
|
|
9
9
|
|
|
10
10
|
var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
|
|
11
11
|
|
|
@@ -28,9 +28,9 @@ function _default(configSchema) {
|
|
|
28
28
|
})).actions(function (self) {
|
|
29
29
|
return {
|
|
30
30
|
selectFeature: function selectFeature(feature) {
|
|
31
|
-
return (0, _asyncToGenerator2
|
|
31
|
+
return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
|
|
32
32
|
var session, rpcManager, sessionId, track, adapterConfig, header, featureWidget;
|
|
33
|
-
return _regenerator
|
|
33
|
+
return _regenerator.default.wrap(function _callee$(_context) {
|
|
34
34
|
while (1) {
|
|
35
35
|
switch (_context.prev = _context.next) {
|
|
36
36
|
case 0:
|