@jbrowse/plugin-spreadsheet-view 2.6.1

package/dist/SpreadsheetView/models/Spreadsheet.js

@@ -0,0 +1,176 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const jexlStrings_1 = require("@jbrowse/core/util/jexlStrings");
+const util_1 = require("@jbrowse/core/util");
+const mobx_1 = require("mobx");
+const mobx_state_tree_1 = require("mobx-state-tree");
+// locals
+const ColumnDataTypes_1 = require("./ColumnDataTypes");
+const StaticRowSet_1 = __importDefault(require("./StaticRowSet"));
+const ColumnDefinition = mobx_state_tree_1.types
+    .model('ColumnDefinition', {
+    name: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
+    dataType: mobx_state_tree_1.types.optional(ColumnDataTypes_1.AnyColumnType, () => ({
+        type: 'Text',
+    })),
+    // set to true if column is derived from other columns
+    // if the column is derived, each cell will have a
+    // `derivationFunction` that is called to get its value
+    isDerived: false,
+    // if this cell is derived from other cells, execute this function to get
+    // the value
+    derivationFunctionText: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
+})
+    .views(self => ({
+    get expr() {
+        if (self.isDerived) {
+            // compile this as a jexl expression
+            return (0, jexlStrings_1.stringToJexlExpression)(String(self.derivationFunctionText), (0, util_1.getEnv)(self).pluginManager.jexl);
+        }
+        return undefined;
+    },
+}));
+/**
+ * #stateModel SpreadsheetViewSpreadsheet
+ * #category view
+ */
+function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+const Spreadsheet = mobx_state_tree_1.types
+    .model('Spreadsheet', {
+    /**
+     * #property
+     */
+    rowSet: mobx_state_tree_1.types.optional(StaticRowSet_1.default, () => StaticRowSet_1.default.create()),
+    /**
+     * #property
+     */
+    columns: mobx_state_tree_1.types.array(ColumnDefinition),
+    /**
+     * #property
+     */
+    columnDisplayOrder: mobx_state_tree_1.types.array(mobx_state_tree_1.types.number),
+    /**
+     * #property
+     */
+    hasColumnNames: false,
+    /**
+     * #property
+     */
+    sortColumns: mobx_state_tree_1.types.array(mobx_state_tree_1.types
+        .model('SortColumns', {
+        columnNumber: mobx_state_tree_1.types.number,
+        descending: false,
+    })
+        .actions(self => ({
+        switchDirection() {
+            self.descending = !self.descending;
+        },
+    }))),
+    assemblyName: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
+})
+    .volatile(() => ({
+    defaultDataType: ColumnDataTypes_1.ColumnTypes.Text,
+    rowMenuPosition: null,
+    isLoaded: false,
+}))
+    .views(self => ({
+    /**
+     * #getter
+     */
+    get initialized() {
+        var _a;
+        const session = (0, util_1.getSession)(self);
+        const name = self.assemblyName;
+        return name ? (_a = session.assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.initialized : false;
+    },
+    /**
+     * #getter
+     */
+    get hideRowSelection() {
+        // just delegates to parent
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        return (0, mobx_state_tree_1.getParent)(self).hideRowSelection;
+    },
+    /**
+     * #getter
+     * list of data type names to be made available in the column
+     * dropdown menu
+     */
+    get dataTypeChoices() {
+        const typeNames = Object.keys(ColumnDataTypes_1.ColumnTypes);
+        return typeNames.map(typeName => {
+            const dataType = ColumnDataTypes_1.ColumnTypes[typeName].create({ type: typeName });
+            const { displayName, categoryName } = dataType;
+            return { typeName, displayName, categoryName };
+        });
+    },
+    /**
+     * #method
+     */
+    rowSortingComparisonFunction(rowA, rowB) {
+        for (let i = 0; i < self.sortColumns.length; i += 1) {
+            const { columnNumber, descending } = self.sortColumns[i];
+            const { dataType } = self.columns[columnNumber];
+            const result = dataType.compare(rowA.cellsWithDerived[columnNumber], rowB.cellsWithDerived[columnNumber]);
+            if (result) {
+                return descending ? -result : result;
+            }
+        }
+        return 0;
+    },
+}))
+    .actions(self => ({
+    afterAttach() {
+        (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
+            const session = (0, util_1.getSession)(self);
+            const { assemblyManager } = session;
+            try {
+                if (self.assemblyName) {
+                    await assemblyManager.waitForAssembly(self.assemblyName);
+                    this.setLoaded(true);
+                }
+            }
+            catch (error) {
+                session.notify(`failed to load assembly ${self.assemblyName} ${error}`, 'error');
+            }
+        }));
+    },
+    /**
+     * #action
+     */
+    setLoaded(flag) {
+        self.isLoaded = flag;
+    },
+    /**
+     * #action
+     */
+    setRowMenuPosition(newPosition) {
+        self.rowMenuPosition = newPosition;
+    },
+    /**
+     * #action
+     */
+    setSortColumns(newSort) {
+        if (newSort) {
+            // @ts-expect-error
+            self.sortColumns = newSort;
+        }
+    },
+    /**
+     * #action
+     */
+    setColumnType(columnNumber, newTypeName) {
+        self.columns[columnNumber].dataType = { type: newTypeName };
+    },
+    /**
+     * #action
+     */
+    unselectAll() {
+        return self.rowSet.unselectAll();
+    },
+}));
+exports.default = Spreadsheet;
+//# sourceMappingURL=Spreadsheet.js.map

package/dist/SpreadsheetView/models/Spreadsheet.js.map

@@ -0,0 +1 @@
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