@jbrowse/plugin-spreadsheet-view 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (279) hide show
  1. package/LICENSE +201 -0
  2. package/dist/LaunchSpreadsheetView/index.d.ts +3 -0
  3. package/dist/LaunchSpreadsheetView/index.js +26 -0
  4. package/dist/LaunchSpreadsheetView/index.js.map +1 -0
  5. package/dist/SpreadsheetView/components/CellData.d.ts +9 -0
  6. package/dist/SpreadsheetView/components/CellData.js +16 -0
  7. package/dist/SpreadsheetView/components/CellData.js.map +1 -0
  8. package/dist/SpreadsheetView/components/ColumnFilterControls.d.ts +3 -0
  9. package/dist/SpreadsheetView/components/ColumnFilterControls.js +62 -0
  10. package/dist/SpreadsheetView/components/ColumnFilterControls.js.map +1 -0
  11. package/dist/SpreadsheetView/components/ColumnMenu.d.ts +16 -0
  12. package/dist/SpreadsheetView/components/ColumnMenu.js +127 -0
  13. package/dist/SpreadsheetView/components/ColumnMenu.js.map +1 -0
  14. package/dist/SpreadsheetView/components/DataRow.d.ts +12 -0
  15. package/dist/SpreadsheetView/components/DataRow.js +82 -0
  16. package/dist/SpreadsheetView/components/DataRow.js.map +1 -0
  17. package/dist/SpreadsheetView/components/DataTable.d.ts +10 -0
  18. package/dist/SpreadsheetView/components/DataTable.js +43 -0
  19. package/dist/SpreadsheetView/components/DataTable.js.map +1 -0
  20. package/dist/SpreadsheetView/components/DataTableHeader.d.ts +6 -0
  21. package/dist/SpreadsheetView/components/DataTableHeader.js +102 -0
  22. package/dist/SpreadsheetView/components/DataTableHeader.js.map +1 -0
  23. package/dist/SpreadsheetView/components/GlobalFilterControls.d.ts +5 -0
  24. package/dist/SpreadsheetView/components/GlobalFilterControls.js +64 -0
  25. package/dist/SpreadsheetView/components/GlobalFilterControls.js.map +1 -0
  26. package/dist/SpreadsheetView/components/ImportWizard.d.ts +6 -0
  27. package/dist/SpreadsheetView/components/ImportWizard.js +81 -0
  28. package/dist/SpreadsheetView/components/ImportWizard.js.map +1 -0
  29. package/dist/SpreadsheetView/components/NumberEditor.d.ts +9 -0
  30. package/dist/SpreadsheetView/components/NumberEditor.js +54 -0
  31. package/dist/SpreadsheetView/components/NumberEditor.js.map +1 -0
  32. package/dist/SpreadsheetView/components/RowCountMessage.d.ts +8 -0
  33. package/dist/SpreadsheetView/components/RowCountMessage.js +33 -0
  34. package/dist/SpreadsheetView/components/RowCountMessage.js.map +1 -0
  35. package/dist/SpreadsheetView/components/RowMenu.d.ts +9 -0
  36. package/dist/SpreadsheetView/components/RowMenu.js +39 -0
  37. package/dist/SpreadsheetView/components/RowMenu.js.map +1 -0
  38. package/dist/SpreadsheetView/components/SortIndicator.d.ts +6 -0
  39. package/dist/SpreadsheetView/components/SortIndicator.js +28 -0
  40. package/dist/SpreadsheetView/components/SortIndicator.js.map +1 -0
  41. package/dist/SpreadsheetView/components/Spreadsheet.d.ts +11 -0
  42. package/dist/SpreadsheetView/components/Spreadsheet.js +25 -0
  43. package/dist/SpreadsheetView/components/Spreadsheet.js.map +1 -0
  44. package/dist/SpreadsheetView/components/SpreadsheetView.d.ts +6 -0
  45. package/dist/SpreadsheetView/components/SpreadsheetView.js +86 -0
  46. package/dist/SpreadsheetView/components/SpreadsheetView.js.map +1 -0
  47. package/dist/SpreadsheetView/components/StatusBar.d.ts +11 -0
  48. package/dist/SpreadsheetView/components/StatusBar.js +42 -0
  49. package/dist/SpreadsheetView/components/StatusBar.js.map +1 -0
  50. package/dist/SpreadsheetView/components/util.d.ts +1 -0
  51. package/dist/SpreadsheetView/components/util.js +19 -0
  52. package/dist/SpreadsheetView/components/util.js.map +1 -0
  53. package/dist/SpreadsheetView/importAdapters/BedImport.d.ts +17 -0
  54. package/dist/SpreadsheetView/importAdapters/BedImport.js +147 -0
  55. package/dist/SpreadsheetView/importAdapters/BedImport.js.map +1 -0
  56. package/dist/SpreadsheetView/importAdapters/ImportUtils.d.ts +42 -0
  57. package/dist/SpreadsheetView/importAdapters/ImportUtils.js +124 -0
  58. package/dist/SpreadsheetView/importAdapters/ImportUtils.js.map +1 -0
  59. package/dist/SpreadsheetView/importAdapters/STARFusionImport.d.ts +9 -0
  60. package/dist/SpreadsheetView/importAdapters/STARFusionImport.js +73 -0
  61. package/dist/SpreadsheetView/importAdapters/STARFusionImport.js.map +1 -0
  62. package/dist/SpreadsheetView/importAdapters/VcfImport.d.ts +13 -0
  63. package/dist/SpreadsheetView/importAdapters/VcfImport.js +111 -0
  64. package/dist/SpreadsheetView/importAdapters/VcfImport.js.map +1 -0
  65. package/dist/SpreadsheetView/index.d.ts +4 -0
  66. package/dist/SpreadsheetView/index.js +42 -0
  67. package/dist/SpreadsheetView/index.js.map +1 -0
  68. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.d.ts +13 -0
  69. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.js +21 -0
  70. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.js.map +1 -0
  71. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.d.ts +13 -0
  72. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.js +21 -0
  73. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.js.map +1 -0
  74. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.d.ts +13 -0
  75. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.js +21 -0
  76. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.js.map +1 -0
  77. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.d.ts +13 -0
  78. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.js +190 -0
  79. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.js.map +1 -0
  80. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.d.ts +19 -0
  81. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js +24 -0
  82. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js.map +1 -0
  83. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.d.ts +30 -0
  84. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js +130 -0
  85. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js.map +1 -0
  86. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.d.ts +28 -0
  87. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js +131 -0
  88. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js.map +1 -0
  89. package/dist/SpreadsheetView/models/ColumnDataTypes/index.d.ts +72 -0
  90. package/dist/SpreadsheetView/models/ColumnDataTypes/index.js +38 -0
  91. package/dist/SpreadsheetView/models/ColumnDataTypes/index.js.map +1 -0
  92. package/dist/SpreadsheetView/models/FilterControls.d.ts +26 -0
  93. package/dist/SpreadsheetView/models/FilterControls.js +88 -0
  94. package/dist/SpreadsheetView/models/FilterControls.js.map +1 -0
  95. package/dist/SpreadsheetView/models/ImportWizard.d.ts +31 -0
  96. package/dist/SpreadsheetView/models/ImportWizard.js +193 -0
  97. package/dist/SpreadsheetView/models/ImportWizard.js.map +1 -0
  98. package/dist/SpreadsheetView/models/Row.d.ts +17 -0
  99. package/dist/SpreadsheetView/models/Row.js +46 -0
  100. package/dist/SpreadsheetView/models/Row.js.map +1 -0
  101. package/dist/SpreadsheetView/models/Spreadsheet.d.ts +256 -0
  102. package/dist/SpreadsheetView/models/Spreadsheet.js +176 -0
  103. package/dist/SpreadsheetView/models/Spreadsheet.js.map +1 -0
  104. package/dist/SpreadsheetView/models/SpreadsheetView.d.ts +485 -0
  105. package/dist/SpreadsheetView/models/SpreadsheetView.js +204 -0
  106. package/dist/SpreadsheetView/models/SpreadsheetView.js.map +1 -0
  107. package/dist/SpreadsheetView/models/StaticRowSet.d.ts +163 -0
  108. package/dist/SpreadsheetView/models/StaticRowSet.js +60 -0
  109. package/dist/SpreadsheetView/models/StaticRowSet.js.map +1 -0
  110. package/dist/index.d.ts +8 -0
  111. package/dist/index.js +36 -0
  112. package/dist/index.js.map +1 -0
  113. package/esm/LaunchSpreadsheetView/index.d.ts +3 -0
  114. package/esm/LaunchSpreadsheetView/index.js +24 -0
  115. package/esm/LaunchSpreadsheetView/index.js.map +1 -0
  116. package/esm/SpreadsheetView/components/CellData.d.ts +9 -0
  117. package/esm/SpreadsheetView/components/CellData.js +11 -0
  118. package/esm/SpreadsheetView/components/CellData.js.map +1 -0
  119. package/esm/SpreadsheetView/components/ColumnFilterControls.d.ts +3 -0
  120. package/esm/SpreadsheetView/components/ColumnFilterControls.js +57 -0
  121. package/esm/SpreadsheetView/components/ColumnFilterControls.js.map +1 -0
  122. package/esm/SpreadsheetView/components/ColumnMenu.d.ts +16 -0
  123. package/esm/SpreadsheetView/components/ColumnMenu.js +122 -0
  124. package/esm/SpreadsheetView/components/ColumnMenu.js.map +1 -0
  125. package/esm/SpreadsheetView/components/DataRow.d.ts +12 -0
  126. package/esm/SpreadsheetView/components/DataRow.js +77 -0
  127. package/esm/SpreadsheetView/components/DataRow.js.map +1 -0
  128. package/esm/SpreadsheetView/components/DataTable.d.ts +10 -0
  129. package/esm/SpreadsheetView/components/DataTable.js +38 -0
  130. package/esm/SpreadsheetView/components/DataTable.js.map +1 -0
  131. package/esm/SpreadsheetView/components/DataTableHeader.d.ts +6 -0
  132. package/esm/SpreadsheetView/components/DataTableHeader.js +74 -0
  133. package/esm/SpreadsheetView/components/DataTableHeader.js.map +1 -0
  134. package/esm/SpreadsheetView/components/GlobalFilterControls.d.ts +5 -0
  135. package/esm/SpreadsheetView/components/GlobalFilterControls.js +36 -0
  136. package/esm/SpreadsheetView/components/GlobalFilterControls.js.map +1 -0
  137. package/esm/SpreadsheetView/components/ImportWizard.d.ts +6 -0
  138. package/esm/SpreadsheetView/components/ImportWizard.js +53 -0
  139. package/esm/SpreadsheetView/components/ImportWizard.js.map +1 -0
  140. package/esm/SpreadsheetView/components/NumberEditor.d.ts +9 -0
  141. package/esm/SpreadsheetView/components/NumberEditor.js +29 -0
  142. package/esm/SpreadsheetView/components/NumberEditor.js.map +1 -0
  143. package/esm/SpreadsheetView/components/RowCountMessage.d.ts +8 -0
  144. package/esm/SpreadsheetView/components/RowCountMessage.js +28 -0
  145. package/esm/SpreadsheetView/components/RowCountMessage.js.map +1 -0
  146. package/esm/SpreadsheetView/components/RowMenu.d.ts +9 -0
  147. package/esm/SpreadsheetView/components/RowMenu.js +34 -0
  148. package/esm/SpreadsheetView/components/RowMenu.js.map +1 -0
  149. package/esm/SpreadsheetView/components/SortIndicator.d.ts +6 -0
  150. package/esm/SpreadsheetView/components/SortIndicator.js +22 -0
  151. package/esm/SpreadsheetView/components/SortIndicator.js.map +1 -0
  152. package/esm/SpreadsheetView/components/Spreadsheet.d.ts +11 -0
  153. package/esm/SpreadsheetView/components/Spreadsheet.js +20 -0
  154. package/esm/SpreadsheetView/components/Spreadsheet.js.map +1 -0
  155. package/esm/SpreadsheetView/components/SpreadsheetView.d.ts +6 -0
  156. package/esm/SpreadsheetView/components/SpreadsheetView.js +58 -0
  157. package/esm/SpreadsheetView/components/SpreadsheetView.js.map +1 -0
  158. package/esm/SpreadsheetView/components/StatusBar.d.ts +11 -0
  159. package/esm/SpreadsheetView/components/StatusBar.js +37 -0
  160. package/esm/SpreadsheetView/components/StatusBar.js.map +1 -0
  161. package/esm/SpreadsheetView/components/util.d.ts +1 -0
  162. package/esm/SpreadsheetView/components/util.js +15 -0
  163. package/esm/SpreadsheetView/components/util.js.map +1 -0
  164. package/esm/SpreadsheetView/importAdapters/BedImport.d.ts +17 -0
  165. package/esm/SpreadsheetView/importAdapters/BedImport.js +141 -0
  166. package/esm/SpreadsheetView/importAdapters/BedImport.js.map +1 -0
  167. package/esm/SpreadsheetView/importAdapters/ImportUtils.d.ts +42 -0
  168. package/esm/SpreadsheetView/importAdapters/ImportUtils.js +95 -0
  169. package/esm/SpreadsheetView/importAdapters/ImportUtils.js.map +1 -0
  170. package/esm/SpreadsheetView/importAdapters/STARFusionImport.d.ts +9 -0
  171. package/esm/SpreadsheetView/importAdapters/STARFusionImport.js +69 -0
  172. package/esm/SpreadsheetView/importAdapters/STARFusionImport.js.map +1 -0
  173. package/esm/SpreadsheetView/importAdapters/VcfImport.d.ts +13 -0
  174. package/esm/SpreadsheetView/importAdapters/VcfImport.js +103 -0
  175. package/esm/SpreadsheetView/importAdapters/VcfImport.js.map +1 -0
  176. package/esm/SpreadsheetView/index.d.ts +4 -0
  177. package/esm/SpreadsheetView/index.js +14 -0
  178. package/esm/SpreadsheetView/index.js.map +1 -0
  179. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.d.ts +13 -0
  180. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.js +16 -0
  181. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.js.map +1 -0
  182. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.d.ts +13 -0
  183. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.js +16 -0
  184. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.js.map +1 -0
  185. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.d.ts +13 -0
  186. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.js +16 -0
  187. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.js.map +1 -0
  188. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.d.ts +13 -0
  189. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.js +185 -0
  190. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.js.map +1 -0
  191. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.d.ts +19 -0
  192. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js +21 -0
  193. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js.map +1 -0
  194. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.d.ts +30 -0
  195. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.js +123 -0
  196. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.js.map +1 -0
  197. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.d.ts +28 -0
  198. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.js +124 -0
  199. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.js.map +1 -0
  200. package/esm/SpreadsheetView/models/ColumnDataTypes/index.d.ts +72 -0
  201. package/esm/SpreadsheetView/models/ColumnDataTypes/index.js +30 -0
  202. package/esm/SpreadsheetView/models/ColumnDataTypes/index.js.map +1 -0
  203. package/esm/SpreadsheetView/models/FilterControls.d.ts +26 -0
  204. package/esm/SpreadsheetView/models/FilterControls.js +86 -0
  205. package/esm/SpreadsheetView/models/FilterControls.js.map +1 -0
  206. package/esm/SpreadsheetView/models/ImportWizard.d.ts +31 -0
  207. package/esm/SpreadsheetView/models/ImportWizard.js +168 -0
  208. package/esm/SpreadsheetView/models/ImportWizard.js.map +1 -0
  209. package/esm/SpreadsheetView/models/Row.d.ts +17 -0
  210. package/esm/SpreadsheetView/models/Row.js +44 -0
  211. package/esm/SpreadsheetView/models/Row.js.map +1 -0
  212. package/esm/SpreadsheetView/models/Spreadsheet.d.ts +256 -0
  213. package/esm/SpreadsheetView/models/Spreadsheet.js +171 -0
  214. package/esm/SpreadsheetView/models/Spreadsheet.js.map +1 -0
  215. package/esm/SpreadsheetView/models/SpreadsheetView.d.ts +485 -0
  216. package/esm/SpreadsheetView/models/SpreadsheetView.js +199 -0
  217. package/esm/SpreadsheetView/models/SpreadsheetView.js.map +1 -0
  218. package/esm/SpreadsheetView/models/StaticRowSet.d.ts +163 -0
  219. package/esm/SpreadsheetView/models/StaticRowSet.js +55 -0
  220. package/esm/SpreadsheetView/models/StaticRowSet.js.map +1 -0
  221. package/esm/index.d.ts +8 -0
  222. package/esm/index.js +30 -0
  223. package/esm/index.js.map +1 -0
  224. package/package.json +65 -0
  225. package/src/LaunchSpreadsheetView/index.ts +40 -0
  226. package/src/SpreadsheetView/components/CellData.tsx +35 -0
  227. package/src/SpreadsheetView/components/ColumnFilterControls.tsx +84 -0
  228. package/src/SpreadsheetView/components/ColumnMenu.tsx +166 -0
  229. package/src/SpreadsheetView/components/DataRow.tsx +126 -0
  230. package/src/SpreadsheetView/components/DataTable.tsx +91 -0
  231. package/src/SpreadsheetView/components/DataTableHeader.tsx +122 -0
  232. package/src/SpreadsheetView/components/GlobalFilterControls.tsx +70 -0
  233. package/src/SpreadsheetView/components/ImportWizard.tsx +139 -0
  234. package/src/SpreadsheetView/components/NumberEditor.tsx +50 -0
  235. package/src/SpreadsheetView/components/RowCountMessage.tsx +44 -0
  236. package/src/SpreadsheetView/components/RowMenu.tsx +65 -0
  237. package/src/SpreadsheetView/components/SortIndicator.tsx +36 -0
  238. package/src/SpreadsheetView/components/Spreadsheet.test.ts +17 -0
  239. package/src/SpreadsheetView/components/Spreadsheet.tsx +46 -0
  240. package/src/SpreadsheetView/components/SpreadsheetView.tsx +119 -0
  241. package/src/SpreadsheetView/components/StatusBar.tsx +75 -0
  242. package/src/SpreadsheetView/components/util.ts +16 -0
  243. package/src/SpreadsheetView/importAdapters/BedImport.test.ts +14 -0
  244. package/src/SpreadsheetView/importAdapters/BedImport.ts +155 -0
  245. package/src/SpreadsheetView/importAdapters/ImportUtils.test.ts +25 -0
  246. package/src/SpreadsheetView/importAdapters/ImportUtils.ts +152 -0
  247. package/src/SpreadsheetView/importAdapters/STARFusionImport.test.ts +27 -0
  248. package/src/SpreadsheetView/importAdapters/STARFusionImport.ts +74 -0
  249. package/src/SpreadsheetView/importAdapters/VcfImport.test.ts +42 -0
  250. package/src/SpreadsheetView/importAdapters/VcfImport.ts +118 -0
  251. package/src/SpreadsheetView/importAdapters/__snapshots__/ImportUtils.test.ts.snap +6555 -0
  252. package/src/SpreadsheetView/importAdapters/__snapshots__/STARFusionImport.test.ts.snap +2354 -0
  253. package/src/SpreadsheetView/importAdapters/__snapshots__/VcfImport.test.ts.snap +16329 -0
  254. package/src/SpreadsheetView/index.ts +20 -0
  255. package/src/SpreadsheetView/models/ColumnDataTypes/LocEnd.ts +21 -0
  256. package/src/SpreadsheetView/models/ColumnDataTypes/LocRef.ts +21 -0
  257. package/src/SpreadsheetView/models/ColumnDataTypes/LocStart.ts +21 -0
  258. package/src/SpreadsheetView/models/ColumnDataTypes/LocString.tsx +328 -0
  259. package/src/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.tsx +38 -0
  260. package/src/SpreadsheetView/models/ColumnDataTypes/Number.tsx +177 -0
  261. package/src/SpreadsheetView/models/ColumnDataTypes/Text.tsx +173 -0
  262. package/src/SpreadsheetView/models/ColumnDataTypes/index.ts +34 -0
  263. package/src/SpreadsheetView/models/FilterControls.ts +95 -0
  264. package/src/SpreadsheetView/models/ImportWizard.ts +203 -0
  265. package/src/SpreadsheetView/models/Row.ts +46 -0
  266. package/src/SpreadsheetView/models/Spreadsheet.ts +209 -0
  267. package/src/SpreadsheetView/models/SpreadsheetView.test.ts +8 -0
  268. package/src/SpreadsheetView/models/SpreadsheetView.ts +243 -0
  269. package/src/SpreadsheetView/models/StaticRowSet.ts +65 -0
  270. package/src/SpreadsheetView/test_data/1801160099-N32519_26611_S51_56704.hard-filtered.vcf +174 -0
  271. package/src/SpreadsheetView/test_data/breast_cancer.subset.csv +50 -0
  272. package/src/SpreadsheetView/test_data/diabetes_target.csv.gz +0 -0
  273. package/src/SpreadsheetView/test_data/foo.bed +11 -0
  274. package/src/SpreadsheetView/test_data/location_test.csv +3 -0
  275. package/src/SpreadsheetView/test_data/location_test_2.csv +3 -0
  276. package/src/SpreadsheetView/test_data/reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt.bedpe +1405 -0
  277. package/src/SpreadsheetView/test_data/starfusion_example.fusion_predictions.tsv +25 -0
  278. package/src/SpreadsheetView/test_data/volvox.sort.bed +109 -0
  279. package/src/index.ts +38 -0
@@ -0,0 +1,199 @@
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+ import { types, getParent, getEnv, cast, } from 'mobx-state-tree';
2
+ import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models';
3
+ import { readConfObject } from '@jbrowse/core/configuration';
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+ import { getSession } from '@jbrowse/core/util';
5
+ // icons
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+ import DoneIcon from '@mui/icons-material/Done';
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+ import FolderOpenIcon from '@mui/icons-material/FolderOpen';
8
+ import SpreadsheetModel from './Spreadsheet';
9
+ import ImportWizardModel from './ImportWizard';
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+ import FilterControlsModel from './FilterControls';
11
+ const defaultRowMenuItems = [
12
+ {
13
+ label: 'Toggle select',
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+ icon: DoneIcon,
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+ onClick(_view, spreadsheet) {
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+ var _a;
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+ const rowNumber = (_a = spreadsheet.rowMenuPosition) === null || _a === void 0 ? void 0 : _a.rowNumber;
18
+ if (rowNumber !== undefined) {
19
+ spreadsheet.rowSet.rows[+rowNumber - 1].toggleSelect();
20
+ }
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+ },
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+ },
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+ ];
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+ const minHeight = 40;
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+ const defaultHeight = 440;
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+ /**
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+ * #stateModel SpreadsheetView
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+ * #category view
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+ */
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+ function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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+ const model = types
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+ .model('SpreadsheetView', {
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+ /**
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+ * #property
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+ */
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+ type: types.literal('SpreadsheetView'),
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+ /**
38
+ * #property
39
+ */
40
+ offsetPx: 0,
41
+ /**
42
+ * #property
43
+ */
44
+ height: types.optional(types.refinement('SpreadsheetViewHeight', types.number, n => n >= minHeight), defaultHeight),
45
+ /**
46
+ * #property
47
+ */
48
+ hideVerticalResizeHandle: false,
49
+ /**
50
+ * #property
51
+ */
52
+ hideFilterControls: false,
53
+ /**
54
+ * #property
55
+ */
56
+ filterControls: types.optional(FilterControlsModel, () => FilterControlsModel.create({})),
57
+ /**
58
+ * #property
59
+ * switch specifying whether we are showing the import wizard or the
60
+ * spreadsheet in our viewing area
61
+ */
62
+ mode: types.optional(types.enumeration('SpreadsheetViewMode', ['import', 'display']), 'import'),
63
+ /**
64
+ * #property
65
+ */
66
+ importWizard: types.optional(ImportWizardModel, () => ImportWizardModel.create()),
67
+ /**
68
+ * #property
69
+ */
70
+ spreadsheet: types.maybe(SpreadsheetModel),
71
+ })
72
+ .volatile(() => ({
73
+ width: 400,
74
+ rowMenuItems: defaultRowMenuItems,
75
+ }))
76
+ .views(self => ({
77
+ /**
78
+ * #getter
79
+ */
80
+ get readyToDisplay() {
81
+ return !!self.spreadsheet && self.spreadsheet.isLoaded;
82
+ },
83
+ /**
84
+ * #getter
85
+ */
86
+ get hideRowSelection() {
87
+ return !!getEnv(self).hideRowSelection;
88
+ },
89
+ /**
90
+ * #getter
91
+ */
92
+ get outputRows() {
93
+ if (self.spreadsheet && self.spreadsheet.rowSet.isLoaded) {
94
+ const selected = self.spreadsheet.rowSet.selectedFilteredRows;
95
+ if (selected.length) {
96
+ return selected;
97
+ }
98
+ return self.spreadsheet.rowSet.sortedFilteredRows;
99
+ }
100
+ return undefined;
101
+ },
102
+ /**
103
+ * #getter
104
+ */
105
+ get assembly() {
106
+ var _a;
107
+ const name = (_a = self.spreadsheet) === null || _a === void 0 ? void 0 : _a.assemblyName;
108
+ if (name) {
109
+ const assemblies = getSession(self).assemblies;
110
+ return assemblies === null || assemblies === void 0 ? void 0 : assemblies.find(asm => readConfObject(asm, 'name') === name);
111
+ }
112
+ return undefined;
113
+ },
114
+ }))
115
+ .actions(self => ({
116
+ /**
117
+ * #action
118
+ */
119
+ setRowMenuItems(newItems) {
120
+ self.rowMenuItems = newItems;
121
+ },
122
+ /**
123
+ * #action
124
+ */
125
+ setWidth(newWidth) {
126
+ self.width = newWidth;
127
+ return self.width;
128
+ },
129
+ /**
130
+ * #action
131
+ */
132
+ setHeight(newHeight) {
133
+ self.height = newHeight > minHeight ? newHeight : minHeight;
134
+ return self.height;
135
+ },
136
+ /**
137
+ * #action
138
+ */
139
+ resizeHeight(distance) {
140
+ const oldHeight = self.height;
141
+ const newHeight = this.setHeight(self.height + distance);
142
+ return newHeight - oldHeight;
143
+ },
144
+ /**
145
+ * #action
146
+ */
147
+ resizeWidth(distance) {
148
+ const oldWidth = self.width;
149
+ const newWidth = this.setWidth(self.width + distance);
150
+ return newWidth - oldWidth;
151
+ },
152
+ /**
153
+ * #action
154
+ * load a new spreadsheet and set our mode to display it
155
+ */
156
+ displaySpreadsheet(spreadsheet) {
157
+ self.filterControls.clearAllFilters();
158
+ self.spreadsheet = cast(spreadsheet);
159
+ self.mode = 'display';
160
+ },
161
+ /**
162
+ * #action
163
+ */
164
+ setImportMode() {
165
+ self.mode = 'import';
166
+ },
167
+ /**
168
+ * #action
169
+ */
170
+ setDisplayMode() {
171
+ if (self.readyToDisplay) {
172
+ self.mode = 'display';
173
+ }
174
+ },
175
+ /**
176
+ * #action
177
+ */
178
+ closeView() {
179
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
180
+ getParent(self, 2).removeView(self);
181
+ },
182
+ }))
183
+ .views(self => ({
184
+ /**
185
+ * #method
186
+ */
187
+ menuItems() {
188
+ return [
189
+ {
190
+ label: 'Return to import form',
191
+ onClick: () => self.setImportMode(),
192
+ icon: FolderOpenIcon,
193
+ },
194
+ ];
195
+ },
196
+ }));
197
+ const SpreadsheetView = types.compose(BaseViewModel, model);
198
+ export default SpreadsheetView;
199
+ //# sourceMappingURL=SpreadsheetView.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,163 @@
1
+ declare const StaticRowModel: import("mobx-state-tree").IModelType<{
2
+ isLoaded: import("mobx-state-tree").ISimpleType<true>;
3
+ rows: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
4
+ id: import("mobx-state-tree").ISimpleType<string>;
5
+ cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
6
+ text: import("mobx-state-tree").ISimpleType<string>;
7
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
8
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
9
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
10
+ isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
11
+ }, {
12
+ toggleSelect(): void;
13
+ unSelect(): void;
14
+ select(): void;
15
+ setExtendedData(data: unknown): void;
16
+ } & {
17
+ readonly cellsWithDerived: any;
18
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
19
+ }, {
20
+ readonly count: number;
21
+ readonly passingFiltersCount: number;
22
+ readonly selectedCount: number;
23
+ readonly selectedAndPassingFiltersCount: number;
24
+ readonly sortedRows: ({
25
+ id: string;
26
+ cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
27
+ text: import("mobx-state-tree").ISimpleType<string>;
28
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
29
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
30
+ text: import("mobx-state-tree").ISimpleType<string>;
31
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
32
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
33
+ extendedData: any;
34
+ isSelected: boolean;
35
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
36
+ toggleSelect(): void;
37
+ unSelect(): void;
38
+ select(): void;
39
+ setExtendedData(data: unknown): void;
40
+ } & {
41
+ readonly cellsWithDerived: any;
42
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
43
+ id: import("mobx-state-tree").ISimpleType<string>;
44
+ cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
45
+ text: import("mobx-state-tree").ISimpleType<string>;
46
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
47
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
48
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
49
+ isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
50
+ }, {
51
+ toggleSelect(): void;
52
+ unSelect(): void;
53
+ select(): void;
54
+ setExtendedData(data: unknown): void;
55
+ } & {
56
+ readonly cellsWithDerived: any;
57
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
58
+ readonly selectedRows: ({
59
+ id: string;
60
+ cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
61
+ text: import("mobx-state-tree").ISimpleType<string>;
62
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
63
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
64
+ text: import("mobx-state-tree").ISimpleType<string>;
65
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
66
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
67
+ extendedData: any;
68
+ isSelected: boolean;
69
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
70
+ toggleSelect(): void;
71
+ unSelect(): void;
72
+ select(): void;
73
+ setExtendedData(data: unknown): void;
74
+ } & {
75
+ readonly cellsWithDerived: any;
76
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
77
+ id: import("mobx-state-tree").ISimpleType<string>;
78
+ cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
79
+ text: import("mobx-state-tree").ISimpleType<string>;
80
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
81
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
82
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
83
+ isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
84
+ }, {
85
+ toggleSelect(): void;
86
+ unSelect(): void;
87
+ select(): void;
88
+ setExtendedData(data: unknown): void;
89
+ } & {
90
+ readonly cellsWithDerived: any;
91
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
92
+ readonly selectedFilteredRows: ({
93
+ id: string;
94
+ cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
95
+ text: import("mobx-state-tree").ISimpleType<string>;
96
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
97
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
98
+ text: import("mobx-state-tree").ISimpleType<string>;
99
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
100
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
101
+ extendedData: any;
102
+ isSelected: boolean;
103
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
104
+ toggleSelect(): void;
105
+ unSelect(): void;
106
+ select(): void;
107
+ setExtendedData(data: unknown): void;
108
+ } & {
109
+ readonly cellsWithDerived: any;
110
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
111
+ id: import("mobx-state-tree").ISimpleType<string>;
112
+ cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
113
+ text: import("mobx-state-tree").ISimpleType<string>;
114
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
115
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
116
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
117
+ isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
118
+ }, {
119
+ toggleSelect(): void;
120
+ unSelect(): void;
121
+ select(): void;
122
+ setExtendedData(data: unknown): void;
123
+ } & {
124
+ readonly cellsWithDerived: any;
125
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
126
+ readonly sortedFilteredRows: ({
127
+ id: string;
128
+ cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
129
+ text: import("mobx-state-tree").ISimpleType<string>;
130
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
131
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
132
+ text: import("mobx-state-tree").ISimpleType<string>;
133
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
134
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
135
+ extendedData: any;
136
+ isSelected: boolean;
137
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
138
+ toggleSelect(): void;
139
+ unSelect(): void;
140
+ select(): void;
141
+ setExtendedData(data: unknown): void;
142
+ } & {
143
+ readonly cellsWithDerived: any;
144
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
145
+ id: import("mobx-state-tree").ISimpleType<string>;
146
+ cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
147
+ text: import("mobx-state-tree").ISimpleType<string>;
148
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
149
+ }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
150
+ extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
151
+ isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
152
+ }, {
153
+ toggleSelect(): void;
154
+ unSelect(): void;
155
+ select(): void;
156
+ setExtendedData(data: unknown): void;
157
+ } & {
158
+ readonly cellsWithDerived: any;
159
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
160
+ } & {
161
+ unselectAll(): void;
162
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
163
+ export default StaticRowModel;
@@ -0,0 +1,55 @@
1
+ import RowModel from './Row';
2
+ import { types, getParent } from 'mobx-state-tree';
3
+ const StaticRowModel = types
4
+ .model('StaticRowSet', {
5
+ isLoaded: types.literal(true),
6
+ rows: types.array(RowModel),
7
+ })
8
+ .views(self => ({
9
+ get count() {
10
+ return self.rows.length;
11
+ },
12
+ get passingFiltersCount() {
13
+ return this.sortedFilteredRows.length;
14
+ },
15
+ get selectedCount() {
16
+ return this.selectedRows.length;
17
+ },
18
+ get selectedAndPassingFiltersCount() {
19
+ return this.selectedFilteredRows.length;
20
+ },
21
+ get sortedRows() {
22
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
23
+ const parent = getParent(self);
24
+ return [...self.rows].sort(parent.rowSortingComparisonFunction);
25
+ },
26
+ get selectedRows() {
27
+ return self.rows.filter(r => r.isSelected);
28
+ },
29
+ get selectedFilteredRows() {
30
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
31
+ const sheet = getParent(self);
32
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
33
+ const view = getParent(sheet);
34
+ const { filterControls } = view;
35
+ return this.selectedRows.filter(row => filterControls.rowPassesFilters(sheet, row));
36
+ },
37
+ // the set of all rows that pass the filters, sorted
38
+ get sortedFilteredRows() {
39
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
40
+ const sheet = getParent(self);
41
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
42
+ const view = getParent(sheet);
43
+ const { filterControls } = view;
44
+ return self.rows
45
+ .filter(row => filterControls.rowPassesFilters(sheet, row))
46
+ .sort(sheet.rowSortingComparisonFunction);
47
+ },
48
+ }))
49
+ .actions(self => ({
50
+ unselectAll() {
51
+ self.rows.forEach(row => row.unSelect());
52
+ },
53
+ }));
54
+ export default StaticRowModel;
55
+ //# sourceMappingURL=StaticRowSet.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"StaticRowSet.js","sourceRoot":"","sources":["../../../src/SpreadsheetView/models/StaticRowSet.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,OAAO,CAAA;AAC5B,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAElD,MAAM,cAAc,GAAG,KAAK;KACzB,KAAK,CAAC,cAAc,EAAE;IACrB,QAAQ,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC;IAC7B,IAAI,EAAE,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC;CAC5B,CAAC;KACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACd,IAAI,KAAK;QACP,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAA;IACzB,CAAC;IAED,IAAI,mBAAmB;QACrB,OAAO,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAA;IACvC,CAAC;IAED,IAAI,aAAa;QACf,OAAO,IAAI,CAAC,YAAY,CAAC,MAAM,CAAA;IACjC,CAAC;IAED,IAAI,8BAA8B;QAChC,OAAO,IAAI,CAAC,oBAAoB,CAAC,MAAM,CAAA;IACzC,CAAC;IAED,IAAI,UAAU;QACZ,8DAA8D;QAC9D,MAAM,MAAM,GAAG,SAAS,CAAM,IAAI,CAAC,CAAA;QACnC,OAAO,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,4BAA4B,CAAC,CAAA;IACjE,CAAC;IAED,IAAI,YAAY;QACd,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,CAAA;IAC5C,CAAC;IAED,IAAI,oBAAoB;QACtB,8DAA8D;QAC9D,MAAM,KAAK,GAAG,SAAS,CAAM,IAAI,CAAC,CAAA;QAClC,8DAA8D;QAC9D,MAAM,IAAI,GAAG,SAAS,CAAM,KAAK,CAAC,CAAA;QAClC,MAAM,EAAE,cAAc,EAAE,GAAG,IAAI,CAAA;QAC/B,OAAO,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CACpC,cAAc,CAAC,gBAAgB,CAAC,KAAK,EAAE,GAAG,CAAC,CAC5C,CAAA;IACH,CAAC;IAED,oDAAoD;IACpD,IAAI,kBAAkB;QACpB,8DAA8D;QAC9D,MAAM,KAAK,GAAG,SAAS,CAAM,IAAI,CAAC,CAAA;QAClC,8DAA8D;QAC9D,MAAM,IAAI,GAAG,SAAS,CAAM,KAAK,CAAC,CAAA;QAClC,MAAM,EAAE,cAAc,EAAE,GAAG,IAAI,CAAA;QAC/B,OAAO,IAAI,CAAC,IAAI;aACb,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,cAAc,CAAC,gBAAgB,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;aAC1D,IAAI,CAAC,KAAK,CAAC,4BAA4B,CAAC,CAAA;IAC7C,CAAC;CACF,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAChB,WAAW;QACT,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,CAAA;IAC1C,CAAC;CACF,CAAC,CAAC,CAAA;AAEL,eAAe,cAAc,CAAA"}
package/esm/index.d.ts ADDED
@@ -0,0 +1,8 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ import Plugin from '@jbrowse/core/Plugin';
3
+ export default class SpreadsheetViewPlugin extends Plugin {
4
+ name: string;
5
+ install(pluginManager: PluginManager): void;
6
+ configure(pluginManager: PluginManager): void;
7
+ }
8
+ export { type SpreadsheetViewModel, type SpreadsheetViewStateModel, } from './SpreadsheetView';
package/esm/index.js ADDED
@@ -0,0 +1,30 @@
1
+ import Plugin from '@jbrowse/core/Plugin';
2
+ import { isAbstractMenuManager } from '@jbrowse/core/util';
3
+ // icons
4
+ import ViewComfyIcon from '@mui/icons-material/ViewComfy';
5
+ // locals
6
+ import SpreadsheetViewF from './SpreadsheetView';
7
+ import LaunchSpreadsheetViewF from './LaunchSpreadsheetView';
8
+ export default class SpreadsheetViewPlugin extends Plugin {
9
+ constructor() {
10
+ super(...arguments);
11
+ this.name = 'SpreadsheetViewPlugin';
12
+ }
13
+ install(pluginManager) {
14
+ SpreadsheetViewF(pluginManager);
15
+ LaunchSpreadsheetViewF(pluginManager);
16
+ }
17
+ configure(pluginManager) {
18
+ const { rootModel } = pluginManager;
19
+ if (isAbstractMenuManager(rootModel)) {
20
+ rootModel.appendToSubMenu(['Add'], {
21
+ label: 'Spreadsheet view',
22
+ icon: ViewComfyIcon,
23
+ onClick: (session) => {
24
+ session.addView('SpreadsheetView', {});
25
+ },
26
+ });
27
+ }
28
+ }
29
+ }
30
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AACA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AACzC,OAAO,EAAwB,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAEhF,QAAQ;AACR,OAAO,aAAa,MAAM,+BAA+B,CAAA;AAEzD,SAAS;AACT,OAAO,gBAAgB,MAAM,mBAAmB,CAAA;AAEhD,OAAO,sBAAsB,MAAM,yBAAyB,CAAA;AAE5D,MAAM,CAAC,OAAO,OAAO,qBAAsB,SAAQ,MAAM;IAAzD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IAmBhC,CAAC;IAjBC,OAAO,CAAC,aAA4B;QAClC,gBAAgB,CAAC,aAAa,CAAC,CAAA;QAC/B,sBAAsB,CAAC,aAAa,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,MAAM,EAAE,SAAS,EAAE,GAAG,aAAa,CAAA;QACnC,IAAI,qBAAqB,CAAC,SAAS,CAAC,EAAE;YACpC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBACjC,KAAK,EAAE,kBAAkB;gBACzB,IAAI,EAAE,aAAa;gBACnB,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,iBAAiB,EAAE,EAAE,CAAC,CAAA;gBACxC,CAAC;aACF,CAAC,CAAA;SACH;IACH,CAAC;CACF"}
package/package.json ADDED
@@ -0,0 +1,65 @@
1
+ {
2
+ "name": "@jbrowse/plugin-spreadsheet-view",
3
+ "version": "2.6.1",
4
+ "description": "JBrowse 2 spreadsheet view",
5
+ "keywords": [
6
+ "jbrowse",
7
+ "jbrowse2"
8
+ ],
9
+ "license": "Apache-2.0",
10
+ "homepage": "https://jbrowse.org",
11
+ "bugs": "https://github.com/GMOD/jbrowse-components/issues",
12
+ "repository": {
13
+ "type": "git",
14
+ "url": "https://github.com/GMOD/jbrowse-components.git",
15
+ "directory": "plugins/spreadsheet-view"
16
+ },
17
+ "author": "JBrowse Team",
18
+ "distMain": "dist/index.js",
19
+ "srcMain": "src/index.ts",
20
+ "main": "dist/index.js",
21
+ "files": [
22
+ "dist",
23
+ "src",
24
+ "esm"
25
+ ],
26
+ "scripts": {
27
+ "build": "npm-run-all build:*",
28
+ "test": "cd ../..; jest plugins/spreadsheet-view",
29
+ "prepublishOnly": "yarn test",
30
+ "prepack": "yarn build && yarn useDist",
31
+ "postpack": "yarn useSrc",
32
+ "useDist": "node ../../scripts/useDist.js",
33
+ "useSrc": "node ../../scripts/useSrc.js",
34
+ "prebuild": "npm run clean",
35
+ "build:esm": "tsc --build tsconfig.build.esm.json",
36
+ "build:es5": "tsc --build tsconfig.build.es5.json",
37
+ "clean": "rimraf dist esm *.tsbuildinfo"
38
+ },
39
+ "dependencies": {
40
+ "@gmod/bgzf-filehandle": "^1.4.3",
41
+ "@gmod/vcf": "^5.0.9",
42
+ "@jbrowse/plugin-variants": "^2.6.1",
43
+ "@mui/icons-material": "^5.0.1",
44
+ "csvtojson": "^2.0.10"
45
+ },
46
+ "peerDependencies": {
47
+ "@jbrowse/core": "^2.0.0",
48
+ "@jbrowse/plugin-linear-genome-view": "^2.0.0",
49
+ "@mui/material": "^5.0.0",
50
+ "mobx": "^6.0.0",
51
+ "mobx-react": "^7.0.0",
52
+ "mobx-state-tree": "^5.0.0",
53
+ "react": ">=16.8.0",
54
+ "react-dom": ">=16.8.0",
55
+ "rxjs": "^7.0.0",
56
+ "tss-react": "^4.0.0"
57
+ },
58
+ "distModule": "esm/index.js",
59
+ "srcModule": "src/index.ts",
60
+ "module": "esm/index.js",
61
+ "publishConfig": {
62
+ "access": "public"
63
+ },
64
+ "gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
65
+ }
@@ -0,0 +1,40 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager'
2
+ import { AbstractSessionModel } from '@jbrowse/core/util'
3
+ import { SpreadsheetViewModel } from '../SpreadsheetView'
4
+
5
+ export default (pluginManager: PluginManager) => {
6
+ pluginManager.addToExtensionPoint(
7
+ 'LaunchView-SpreadsheetView',
8
+ // @ts-expect-error
9
+ async ({
10
+ session,
11
+ assembly,
12
+ uri,
13
+ fileType,
14
+ }: {
15
+ session: AbstractSessionModel
16
+ assembly: string
17
+ uri: string
18
+ fileType?: string
19
+ }) => {
20
+ const view = session.addView('SpreadsheetView') as SpreadsheetViewModel
21
+
22
+ if (!view) {
23
+ throw new Error('Failed to initialize view')
24
+ }
25
+ const exts = uri.split('.')
26
+ let ext = exts?.pop()?.toUpperCase()
27
+ if (ext === 'GZ') {
28
+ ext = exts?.pop()?.toUpperCase()
29
+ }
30
+
31
+ view.importWizard.setFileType(fileType || ext || '')
32
+ view.importWizard.setSelectedAssemblyName(assembly)
33
+ view.importWizard.setFileSource({
34
+ uri,
35
+ locationType: 'UriLocation',
36
+ })
37
+ await view.importWizard.import(assembly)
38
+ },
39
+ )
40
+ }
@@ -0,0 +1,35 @@
1
+ import React from 'react'
2
+ import { observer } from 'mobx-react'
3
+ import { Instance } from 'mobx-state-tree'
4
+
5
+ // locals
6
+ import SpreadsheetStateModel from '../models/Spreadsheet'
7
+
8
+ type SpreadsheetModel = Instance<typeof SpreadsheetStateModel>
9
+
10
+ const CellData = observer(function ({
11
+ cell,
12
+ spreadsheetModel,
13
+ columnNumber,
14
+ }: {
15
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
16
+ cell: any
17
+ spreadsheetModel: SpreadsheetModel
18
+ columnNumber: number
19
+ }) {
20
+ const ret = spreadsheetModel.columns[columnNumber]
21
+ if (ret && 'dataType' in ret && ret.dataType.DataCellReactComponent) {
22
+ return (
23
+ <ret.dataType.DataCellReactComponent
24
+ cell={cell}
25
+ dataType={ret.dataType}
26
+ columnNumber={columnNumber}
27
+ spreadsheet={spreadsheetModel}
28
+ />
29
+ )
30
+ }
31
+
32
+ return cell.text
33
+ })
34
+
35
+ export default CellData