@jbrowse/plugin-spreadsheet-view 2.6.1

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Files changed (279) hide show
  1. package/LICENSE +201 -0
  2. package/dist/LaunchSpreadsheetView/index.d.ts +3 -0
  3. package/dist/LaunchSpreadsheetView/index.js +26 -0
  4. package/dist/LaunchSpreadsheetView/index.js.map +1 -0
  5. package/dist/SpreadsheetView/components/CellData.d.ts +9 -0
  6. package/dist/SpreadsheetView/components/CellData.js +16 -0
  7. package/dist/SpreadsheetView/components/CellData.js.map +1 -0
  8. package/dist/SpreadsheetView/components/ColumnFilterControls.d.ts +3 -0
  9. package/dist/SpreadsheetView/components/ColumnFilterControls.js +62 -0
  10. package/dist/SpreadsheetView/components/ColumnFilterControls.js.map +1 -0
  11. package/dist/SpreadsheetView/components/ColumnMenu.d.ts +16 -0
  12. package/dist/SpreadsheetView/components/ColumnMenu.js +127 -0
  13. package/dist/SpreadsheetView/components/ColumnMenu.js.map +1 -0
  14. package/dist/SpreadsheetView/components/DataRow.d.ts +12 -0
  15. package/dist/SpreadsheetView/components/DataRow.js +82 -0
  16. package/dist/SpreadsheetView/components/DataRow.js.map +1 -0
  17. package/dist/SpreadsheetView/components/DataTable.d.ts +10 -0
  18. package/dist/SpreadsheetView/components/DataTable.js +43 -0
  19. package/dist/SpreadsheetView/components/DataTable.js.map +1 -0
  20. package/dist/SpreadsheetView/components/DataTableHeader.d.ts +6 -0
  21. package/dist/SpreadsheetView/components/DataTableHeader.js +102 -0
  22. package/dist/SpreadsheetView/components/DataTableHeader.js.map +1 -0
  23. package/dist/SpreadsheetView/components/GlobalFilterControls.d.ts +5 -0
  24. package/dist/SpreadsheetView/components/GlobalFilterControls.js +64 -0
  25. package/dist/SpreadsheetView/components/GlobalFilterControls.js.map +1 -0
  26. package/dist/SpreadsheetView/components/ImportWizard.d.ts +6 -0
  27. package/dist/SpreadsheetView/components/ImportWizard.js +81 -0
  28. package/dist/SpreadsheetView/components/ImportWizard.js.map +1 -0
  29. package/dist/SpreadsheetView/components/NumberEditor.d.ts +9 -0
  30. package/dist/SpreadsheetView/components/NumberEditor.js +54 -0
  31. package/dist/SpreadsheetView/components/NumberEditor.js.map +1 -0
  32. package/dist/SpreadsheetView/components/RowCountMessage.d.ts +8 -0
  33. package/dist/SpreadsheetView/components/RowCountMessage.js +33 -0
  34. package/dist/SpreadsheetView/components/RowCountMessage.js.map +1 -0
  35. package/dist/SpreadsheetView/components/RowMenu.d.ts +9 -0
  36. package/dist/SpreadsheetView/components/RowMenu.js +39 -0
  37. package/dist/SpreadsheetView/components/RowMenu.js.map +1 -0
  38. package/dist/SpreadsheetView/components/SortIndicator.d.ts +6 -0
  39. package/dist/SpreadsheetView/components/SortIndicator.js +28 -0
  40. package/dist/SpreadsheetView/components/SortIndicator.js.map +1 -0
  41. package/dist/SpreadsheetView/components/Spreadsheet.d.ts +11 -0
  42. package/dist/SpreadsheetView/components/Spreadsheet.js +25 -0
  43. package/dist/SpreadsheetView/components/Spreadsheet.js.map +1 -0
  44. package/dist/SpreadsheetView/components/SpreadsheetView.d.ts +6 -0
  45. package/dist/SpreadsheetView/components/SpreadsheetView.js +86 -0
  46. package/dist/SpreadsheetView/components/SpreadsheetView.js.map +1 -0
  47. package/dist/SpreadsheetView/components/StatusBar.d.ts +11 -0
  48. package/dist/SpreadsheetView/components/StatusBar.js +42 -0
  49. package/dist/SpreadsheetView/components/StatusBar.js.map +1 -0
  50. package/dist/SpreadsheetView/components/util.d.ts +1 -0
  51. package/dist/SpreadsheetView/components/util.js +19 -0
  52. package/dist/SpreadsheetView/components/util.js.map +1 -0
  53. package/dist/SpreadsheetView/importAdapters/BedImport.d.ts +17 -0
  54. package/dist/SpreadsheetView/importAdapters/BedImport.js +147 -0
  55. package/dist/SpreadsheetView/importAdapters/BedImport.js.map +1 -0
  56. package/dist/SpreadsheetView/importAdapters/ImportUtils.d.ts +42 -0
  57. package/dist/SpreadsheetView/importAdapters/ImportUtils.js +124 -0
  58. package/dist/SpreadsheetView/importAdapters/ImportUtils.js.map +1 -0
  59. package/dist/SpreadsheetView/importAdapters/STARFusionImport.d.ts +9 -0
  60. package/dist/SpreadsheetView/importAdapters/STARFusionImport.js +73 -0
  61. package/dist/SpreadsheetView/importAdapters/STARFusionImport.js.map +1 -0
  62. package/dist/SpreadsheetView/importAdapters/VcfImport.d.ts +13 -0
  63. package/dist/SpreadsheetView/importAdapters/VcfImport.js +111 -0
  64. package/dist/SpreadsheetView/importAdapters/VcfImport.js.map +1 -0
  65. package/dist/SpreadsheetView/index.d.ts +4 -0
  66. package/dist/SpreadsheetView/index.js +42 -0
  67. package/dist/SpreadsheetView/index.js.map +1 -0
  68. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.d.ts +13 -0
  69. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.js +21 -0
  70. package/dist/SpreadsheetView/models/ColumnDataTypes/LocEnd.js.map +1 -0
  71. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.d.ts +13 -0
  72. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.js +21 -0
  73. package/dist/SpreadsheetView/models/ColumnDataTypes/LocRef.js.map +1 -0
  74. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.d.ts +13 -0
  75. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.js +21 -0
  76. package/dist/SpreadsheetView/models/ColumnDataTypes/LocStart.js.map +1 -0
  77. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.d.ts +13 -0
  78. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.js +190 -0
  79. package/dist/SpreadsheetView/models/ColumnDataTypes/LocString.js.map +1 -0
  80. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.d.ts +19 -0
  81. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js +24 -0
  82. package/dist/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js.map +1 -0
  83. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.d.ts +30 -0
  84. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js +130 -0
  85. package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js.map +1 -0
  86. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.d.ts +28 -0
  87. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js +131 -0
  88. package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js.map +1 -0
  89. package/dist/SpreadsheetView/models/ColumnDataTypes/index.d.ts +72 -0
  90. package/dist/SpreadsheetView/models/ColumnDataTypes/index.js +38 -0
  91. package/dist/SpreadsheetView/models/ColumnDataTypes/index.js.map +1 -0
  92. package/dist/SpreadsheetView/models/FilterControls.d.ts +26 -0
  93. package/dist/SpreadsheetView/models/FilterControls.js +88 -0
  94. package/dist/SpreadsheetView/models/FilterControls.js.map +1 -0
  95. package/dist/SpreadsheetView/models/ImportWizard.d.ts +31 -0
  96. package/dist/SpreadsheetView/models/ImportWizard.js +193 -0
  97. package/dist/SpreadsheetView/models/ImportWizard.js.map +1 -0
  98. package/dist/SpreadsheetView/models/Row.d.ts +17 -0
  99. package/dist/SpreadsheetView/models/Row.js +46 -0
  100. package/dist/SpreadsheetView/models/Row.js.map +1 -0
  101. package/dist/SpreadsheetView/models/Spreadsheet.d.ts +256 -0
  102. package/dist/SpreadsheetView/models/Spreadsheet.js +176 -0
  103. package/dist/SpreadsheetView/models/Spreadsheet.js.map +1 -0
  104. package/dist/SpreadsheetView/models/SpreadsheetView.d.ts +485 -0
  105. package/dist/SpreadsheetView/models/SpreadsheetView.js +204 -0
  106. package/dist/SpreadsheetView/models/SpreadsheetView.js.map +1 -0
  107. package/dist/SpreadsheetView/models/StaticRowSet.d.ts +163 -0
  108. package/dist/SpreadsheetView/models/StaticRowSet.js +60 -0
  109. package/dist/SpreadsheetView/models/StaticRowSet.js.map +1 -0
  110. package/dist/index.d.ts +8 -0
  111. package/dist/index.js +36 -0
  112. package/dist/index.js.map +1 -0
  113. package/esm/LaunchSpreadsheetView/index.d.ts +3 -0
  114. package/esm/LaunchSpreadsheetView/index.js +24 -0
  115. package/esm/LaunchSpreadsheetView/index.js.map +1 -0
  116. package/esm/SpreadsheetView/components/CellData.d.ts +9 -0
  117. package/esm/SpreadsheetView/components/CellData.js +11 -0
  118. package/esm/SpreadsheetView/components/CellData.js.map +1 -0
  119. package/esm/SpreadsheetView/components/ColumnFilterControls.d.ts +3 -0
  120. package/esm/SpreadsheetView/components/ColumnFilterControls.js +57 -0
  121. package/esm/SpreadsheetView/components/ColumnFilterControls.js.map +1 -0
  122. package/esm/SpreadsheetView/components/ColumnMenu.d.ts +16 -0
  123. package/esm/SpreadsheetView/components/ColumnMenu.js +122 -0
  124. package/esm/SpreadsheetView/components/ColumnMenu.js.map +1 -0
  125. package/esm/SpreadsheetView/components/DataRow.d.ts +12 -0
  126. package/esm/SpreadsheetView/components/DataRow.js +77 -0
  127. package/esm/SpreadsheetView/components/DataRow.js.map +1 -0
  128. package/esm/SpreadsheetView/components/DataTable.d.ts +10 -0
  129. package/esm/SpreadsheetView/components/DataTable.js +38 -0
  130. package/esm/SpreadsheetView/components/DataTable.js.map +1 -0
  131. package/esm/SpreadsheetView/components/DataTableHeader.d.ts +6 -0
  132. package/esm/SpreadsheetView/components/DataTableHeader.js +74 -0
  133. package/esm/SpreadsheetView/components/DataTableHeader.js.map +1 -0
  134. package/esm/SpreadsheetView/components/GlobalFilterControls.d.ts +5 -0
  135. package/esm/SpreadsheetView/components/GlobalFilterControls.js +36 -0
  136. package/esm/SpreadsheetView/components/GlobalFilterControls.js.map +1 -0
  137. package/esm/SpreadsheetView/components/ImportWizard.d.ts +6 -0
  138. package/esm/SpreadsheetView/components/ImportWizard.js +53 -0
  139. package/esm/SpreadsheetView/components/ImportWizard.js.map +1 -0
  140. package/esm/SpreadsheetView/components/NumberEditor.d.ts +9 -0
  141. package/esm/SpreadsheetView/components/NumberEditor.js +29 -0
  142. package/esm/SpreadsheetView/components/NumberEditor.js.map +1 -0
  143. package/esm/SpreadsheetView/components/RowCountMessage.d.ts +8 -0
  144. package/esm/SpreadsheetView/components/RowCountMessage.js +28 -0
  145. package/esm/SpreadsheetView/components/RowCountMessage.js.map +1 -0
  146. package/esm/SpreadsheetView/components/RowMenu.d.ts +9 -0
  147. package/esm/SpreadsheetView/components/RowMenu.js +34 -0
  148. package/esm/SpreadsheetView/components/RowMenu.js.map +1 -0
  149. package/esm/SpreadsheetView/components/SortIndicator.d.ts +6 -0
  150. package/esm/SpreadsheetView/components/SortIndicator.js +22 -0
  151. package/esm/SpreadsheetView/components/SortIndicator.js.map +1 -0
  152. package/esm/SpreadsheetView/components/Spreadsheet.d.ts +11 -0
  153. package/esm/SpreadsheetView/components/Spreadsheet.js +20 -0
  154. package/esm/SpreadsheetView/components/Spreadsheet.js.map +1 -0
  155. package/esm/SpreadsheetView/components/SpreadsheetView.d.ts +6 -0
  156. package/esm/SpreadsheetView/components/SpreadsheetView.js +58 -0
  157. package/esm/SpreadsheetView/components/SpreadsheetView.js.map +1 -0
  158. package/esm/SpreadsheetView/components/StatusBar.d.ts +11 -0
  159. package/esm/SpreadsheetView/components/StatusBar.js +37 -0
  160. package/esm/SpreadsheetView/components/StatusBar.js.map +1 -0
  161. package/esm/SpreadsheetView/components/util.d.ts +1 -0
  162. package/esm/SpreadsheetView/components/util.js +15 -0
  163. package/esm/SpreadsheetView/components/util.js.map +1 -0
  164. package/esm/SpreadsheetView/importAdapters/BedImport.d.ts +17 -0
  165. package/esm/SpreadsheetView/importAdapters/BedImport.js +141 -0
  166. package/esm/SpreadsheetView/importAdapters/BedImport.js.map +1 -0
  167. package/esm/SpreadsheetView/importAdapters/ImportUtils.d.ts +42 -0
  168. package/esm/SpreadsheetView/importAdapters/ImportUtils.js +95 -0
  169. package/esm/SpreadsheetView/importAdapters/ImportUtils.js.map +1 -0
  170. package/esm/SpreadsheetView/importAdapters/STARFusionImport.d.ts +9 -0
  171. package/esm/SpreadsheetView/importAdapters/STARFusionImport.js +69 -0
  172. package/esm/SpreadsheetView/importAdapters/STARFusionImport.js.map +1 -0
  173. package/esm/SpreadsheetView/importAdapters/VcfImport.d.ts +13 -0
  174. package/esm/SpreadsheetView/importAdapters/VcfImport.js +103 -0
  175. package/esm/SpreadsheetView/importAdapters/VcfImport.js.map +1 -0
  176. package/esm/SpreadsheetView/index.d.ts +4 -0
  177. package/esm/SpreadsheetView/index.js +14 -0
  178. package/esm/SpreadsheetView/index.js.map +1 -0
  179. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.d.ts +13 -0
  180. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.js +16 -0
  181. package/esm/SpreadsheetView/models/ColumnDataTypes/LocEnd.js.map +1 -0
  182. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.d.ts +13 -0
  183. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.js +16 -0
  184. package/esm/SpreadsheetView/models/ColumnDataTypes/LocRef.js.map +1 -0
  185. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.d.ts +13 -0
  186. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.js +16 -0
  187. package/esm/SpreadsheetView/models/ColumnDataTypes/LocStart.js.map +1 -0
  188. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.d.ts +13 -0
  189. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.js +185 -0
  190. package/esm/SpreadsheetView/models/ColumnDataTypes/LocString.js.map +1 -0
  191. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.d.ts +19 -0
  192. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js +21 -0
  193. package/esm/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.js.map +1 -0
  194. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.d.ts +30 -0
  195. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.js +123 -0
  196. package/esm/SpreadsheetView/models/ColumnDataTypes/Number.js.map +1 -0
  197. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.d.ts +28 -0
  198. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.js +124 -0
  199. package/esm/SpreadsheetView/models/ColumnDataTypes/Text.js.map +1 -0
  200. package/esm/SpreadsheetView/models/ColumnDataTypes/index.d.ts +72 -0
  201. package/esm/SpreadsheetView/models/ColumnDataTypes/index.js +30 -0
  202. package/esm/SpreadsheetView/models/ColumnDataTypes/index.js.map +1 -0
  203. package/esm/SpreadsheetView/models/FilterControls.d.ts +26 -0
  204. package/esm/SpreadsheetView/models/FilterControls.js +86 -0
  205. package/esm/SpreadsheetView/models/FilterControls.js.map +1 -0
  206. package/esm/SpreadsheetView/models/ImportWizard.d.ts +31 -0
  207. package/esm/SpreadsheetView/models/ImportWizard.js +168 -0
  208. package/esm/SpreadsheetView/models/ImportWizard.js.map +1 -0
  209. package/esm/SpreadsheetView/models/Row.d.ts +17 -0
  210. package/esm/SpreadsheetView/models/Row.js +44 -0
  211. package/esm/SpreadsheetView/models/Row.js.map +1 -0
  212. package/esm/SpreadsheetView/models/Spreadsheet.d.ts +256 -0
  213. package/esm/SpreadsheetView/models/Spreadsheet.js +171 -0
  214. package/esm/SpreadsheetView/models/Spreadsheet.js.map +1 -0
  215. package/esm/SpreadsheetView/models/SpreadsheetView.d.ts +485 -0
  216. package/esm/SpreadsheetView/models/SpreadsheetView.js +199 -0
  217. package/esm/SpreadsheetView/models/SpreadsheetView.js.map +1 -0
  218. package/esm/SpreadsheetView/models/StaticRowSet.d.ts +163 -0
  219. package/esm/SpreadsheetView/models/StaticRowSet.js +55 -0
  220. package/esm/SpreadsheetView/models/StaticRowSet.js.map +1 -0
  221. package/esm/index.d.ts +8 -0
  222. package/esm/index.js +30 -0
  223. package/esm/index.js.map +1 -0
  224. package/package.json +65 -0
  225. package/src/LaunchSpreadsheetView/index.ts +40 -0
  226. package/src/SpreadsheetView/components/CellData.tsx +35 -0
  227. package/src/SpreadsheetView/components/ColumnFilterControls.tsx +84 -0
  228. package/src/SpreadsheetView/components/ColumnMenu.tsx +166 -0
  229. package/src/SpreadsheetView/components/DataRow.tsx +126 -0
  230. package/src/SpreadsheetView/components/DataTable.tsx +91 -0
  231. package/src/SpreadsheetView/components/DataTableHeader.tsx +122 -0
  232. package/src/SpreadsheetView/components/GlobalFilterControls.tsx +70 -0
  233. package/src/SpreadsheetView/components/ImportWizard.tsx +139 -0
  234. package/src/SpreadsheetView/components/NumberEditor.tsx +50 -0
  235. package/src/SpreadsheetView/components/RowCountMessage.tsx +44 -0
  236. package/src/SpreadsheetView/components/RowMenu.tsx +65 -0
  237. package/src/SpreadsheetView/components/SortIndicator.tsx +36 -0
  238. package/src/SpreadsheetView/components/Spreadsheet.test.ts +17 -0
  239. package/src/SpreadsheetView/components/Spreadsheet.tsx +46 -0
  240. package/src/SpreadsheetView/components/SpreadsheetView.tsx +119 -0
  241. package/src/SpreadsheetView/components/StatusBar.tsx +75 -0
  242. package/src/SpreadsheetView/components/util.ts +16 -0
  243. package/src/SpreadsheetView/importAdapters/BedImport.test.ts +14 -0
  244. package/src/SpreadsheetView/importAdapters/BedImport.ts +155 -0
  245. package/src/SpreadsheetView/importAdapters/ImportUtils.test.ts +25 -0
  246. package/src/SpreadsheetView/importAdapters/ImportUtils.ts +152 -0
  247. package/src/SpreadsheetView/importAdapters/STARFusionImport.test.ts +27 -0
  248. package/src/SpreadsheetView/importAdapters/STARFusionImport.ts +74 -0
  249. package/src/SpreadsheetView/importAdapters/VcfImport.test.ts +42 -0
  250. package/src/SpreadsheetView/importAdapters/VcfImport.ts +118 -0
  251. package/src/SpreadsheetView/importAdapters/__snapshots__/ImportUtils.test.ts.snap +6555 -0
  252. package/src/SpreadsheetView/importAdapters/__snapshots__/STARFusionImport.test.ts.snap +2354 -0
  253. package/src/SpreadsheetView/importAdapters/__snapshots__/VcfImport.test.ts.snap +16329 -0
  254. package/src/SpreadsheetView/index.ts +20 -0
  255. package/src/SpreadsheetView/models/ColumnDataTypes/LocEnd.ts +21 -0
  256. package/src/SpreadsheetView/models/ColumnDataTypes/LocRef.ts +21 -0
  257. package/src/SpreadsheetView/models/ColumnDataTypes/LocStart.ts +21 -0
  258. package/src/SpreadsheetView/models/ColumnDataTypes/LocString.tsx +328 -0
  259. package/src/SpreadsheetView/models/ColumnDataTypes/MakeSpreadsheetColumnType.tsx +38 -0
  260. package/src/SpreadsheetView/models/ColumnDataTypes/Number.tsx +177 -0
  261. package/src/SpreadsheetView/models/ColumnDataTypes/Text.tsx +173 -0
  262. package/src/SpreadsheetView/models/ColumnDataTypes/index.ts +34 -0
  263. package/src/SpreadsheetView/models/FilterControls.ts +95 -0
  264. package/src/SpreadsheetView/models/ImportWizard.ts +203 -0
  265. package/src/SpreadsheetView/models/Row.ts +46 -0
  266. package/src/SpreadsheetView/models/Spreadsheet.ts +209 -0
  267. package/src/SpreadsheetView/models/SpreadsheetView.test.ts +8 -0
  268. package/src/SpreadsheetView/models/SpreadsheetView.ts +243 -0
  269. package/src/SpreadsheetView/models/StaticRowSet.ts +65 -0
  270. package/src/SpreadsheetView/test_data/1801160099-N32519_26611_S51_56704.hard-filtered.vcf +174 -0
  271. package/src/SpreadsheetView/test_data/breast_cancer.subset.csv +50 -0
  272. package/src/SpreadsheetView/test_data/diabetes_target.csv.gz +0 -0
  273. package/src/SpreadsheetView/test_data/foo.bed +11 -0
  274. package/src/SpreadsheetView/test_data/location_test.csv +3 -0
  275. package/src/SpreadsheetView/test_data/location_test_2.csv +3 -0
  276. package/src/SpreadsheetView/test_data/reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt.bedpe +1405 -0
  277. package/src/SpreadsheetView/test_data/starfusion_example.fusion_predictions.tsv +25 -0
  278. package/src/SpreadsheetView/test_data/volvox.sort.bed +109 -0
  279. package/src/index.ts +38 -0

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