@jbrowse/plugin-spreadsheet-view 2.17.0 → 3.0.0

package/esm/SpreadsheetView/models/SpreadsheetView.js

@@ -1,194 +0,0 @@
-import { types, getEnv, cast } from 'mobx-state-tree';
-import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models';
-import { readConfObject } from '@jbrowse/core/configuration';
-import { getSession } from '@jbrowse/core/util';
-// icons
-import DoneIcon from '@mui/icons-material/Done';
-import FolderOpenIcon from '@mui/icons-material/FolderOpen';
-import SpreadsheetModel from './Spreadsheet';
-import ImportWizardModel from './ImportWizard';
-import FilterControlsModel from './FilterControls';
-const defaultRowMenuItems = [
-    {
-        label: 'Toggle select',
-        icon: DoneIcon,
-        onClick(_view, spreadsheet) {
-            var _a;
-            const rowNumber = (_a = spreadsheet.rowMenuPosition) === null || _a === void 0 ? void 0 : _a.rowNumber;
-            if (rowNumber !== undefined) {
-                spreadsheet.rowSet.rows[+rowNumber - 1].toggleSelect();
-            }
-        },
-    },
-];
-const minHeight = 40;
-const defaultHeight = 440;
-/**
- * #stateModel SpreadsheetView
- * #category view
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
-const model = types
-    .model('SpreadsheetView', {
-    /**
-     * #property
-     */
-    type: types.literal('SpreadsheetView'),
-    /**
-     * #property
-     */
-    offsetPx: 0,
-    /**
-     * #property
-     */
-    height: types.optional(types.refinement('SpreadsheetViewHeight', types.number, n => n >= minHeight), defaultHeight),
-    /**
-     * #property
-     */
-    hideVerticalResizeHandle: false,
-    /**
-     * #property
-     */
-    hideFilterControls: false,
-    /**
-     * #property
-     */
-    filterControls: types.optional(FilterControlsModel, () => FilterControlsModel.create({})),
-    /**
-     * #property
-     * switch specifying whether we are showing the import wizard or the
-     * spreadsheet in our viewing area
-     */
-    mode: types.optional(types.enumeration('SpreadsheetViewMode', ['import', 'display']), 'import'),
-    /**
-     * #property
-     */
-    importWizard: types.optional(ImportWizardModel, () => ImportWizardModel.create()),
-    /**
-     * #property
-     */
-    spreadsheet: types.maybe(SpreadsheetModel),
-})
-    .volatile(() => ({
-    width: 400,
-    rowMenuItems: defaultRowMenuItems,
-}))
-    .views(self => ({
-    /**
-     * #getter
-     */
-    get readyToDisplay() {
-        return !!self.spreadsheet && self.spreadsheet.isLoaded;
-    },
-    /**
-     * #getter
-     */
-    get hideRowSelection() {
-        return !!getEnv(self).hideRowSelection;
-    },
-    /**
-     * #getter
-     */
-    get outputRows() {
-        var _a;
-        if ((_a = self.spreadsheet) === null || _a === void 0 ? void 0 : _a.rowSet.isLoaded) {
-            const selected = self.spreadsheet.rowSet.selectedFilteredRows;
-            if (selected.length) {
-                return selected;
-            }
-            return self.spreadsheet.rowSet.sortedFilteredRows;
-        }
-        return undefined;
-    },
-    /**
-     * #getter
-     */
-    get assembly() {
-        var _a;
-        const name = (_a = self.spreadsheet) === null || _a === void 0 ? void 0 : _a.assemblyName;
-        if (name) {
-            const assemblies = getSession(self).assemblies;
-            return assemblies.find(asm => readConfObject(asm, 'name') === name);
-        }
-        return undefined;
-    },
-}))
-    .actions(self => ({
-    /**
-     * #action
-     */
-    setRowMenuItems(newItems) {
-        self.rowMenuItems = newItems;
-    },
-    /**
-     * #action
-     */
-    setWidth(newWidth) {
-        self.width = newWidth;
-        return self.width;
-    },
-    /**
-     * #action
-     */
-    setHeight(newHeight) {
-        self.height = Math.max(newHeight, minHeight);
-        return self.height;
-    },
-    /**
-     * #action
-     */
-    resizeHeight(distance) {
-        const oldHeight = self.height;
-        const newHeight = this.setHeight(self.height + distance);
-        return newHeight - oldHeight;
-    },
-    /**
-     * #action
-     */
-    resizeWidth(distance) {
-        const oldWidth = self.width;
-        const newWidth = this.setWidth(self.width + distance);
-        return newWidth - oldWidth;
-    },
-    /**
-     * #action
-     * load a new spreadsheet and set our mode to display it
-     */
-    displaySpreadsheet(spreadsheet) {
-        self.filterControls.clearAllFilters();
-        self.spreadsheet = cast(spreadsheet);
-        self.mode = 'display';
-    },
-    /**
-     * #action
-     */
-    setImportMode() {
-        self.mode = 'import';
-    },
-    /**
-     * #action
-     */
-    setDisplayMode() {
-        if (self.readyToDisplay) {
-            self.mode = 'display';
-        }
-    },
-}))
-    .views(self => ({
-    /**
-     * #method
-     */
-    menuItems() {
-        return [
-            {
-                label: 'Return to import form',
-                onClick: () => {
-                    self.setImportMode();
-                },
-                icon: FolderOpenIcon,
-            },
-        ];
-    },
-}));
-const SpreadsheetView = types.compose(BaseViewModel, model);
-export default SpreadsheetView;

package/esm/SpreadsheetView/models/StaticRowSet.d.ts

@@ -1,163 +0,0 @@
-declare const StaticRowModel: import("mobx-state-tree").IModelType<{
-    isLoaded: import("mobx-state-tree").ISimpleType<true>;
-    rows: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").ISimpleType<string>;
-        cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-}, {
-    readonly count: number;
-    readonly passingFiltersCount: number;
-    readonly selectedCount: number;
-    readonly selectedAndPassingFiltersCount: number;
-    readonly sortedRows: ({
-        id: string;
-        cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-        extendedData: any;
-        isSelected: boolean;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").ISimpleType<string>;
-        cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-    readonly selectedRows: ({
-        id: string;
-        cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-        extendedData: any;
-        isSelected: boolean;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").ISimpleType<string>;
-        cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-    readonly selectedFilteredRows: ({
-        id: string;
-        cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-        extendedData: any;
-        isSelected: boolean;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").ISimpleType<string>;
-        cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-    readonly sortedFilteredRows: ({
-        id: string;
-        cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-        extendedData: any;
-        isSelected: boolean;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").ISimpleType<string>;
-        cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            text: import("mobx-state-tree").ISimpleType<string>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-        isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        toggleSelect(): void;
-        unSelect(): void;
-        select(): void;
-        setExtendedData(data: unknown): void;
-    } & {
-        readonly cellsWithDerived: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-} & {
-    unselectAll(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export default StaticRowModel;

package/esm/SpreadsheetView/models/StaticRowSet.js

@@ -1,51 +0,0 @@
-import RowModel from './Row';
-import { types, getParent } from 'mobx-state-tree';
-const StaticRowModel = types
-    .model('StaticRowSet', {
-    isLoaded: types.literal(true),
-    rows: types.array(RowModel),
-})
-    .views(self => ({
-    get count() {
-        return self.rows.length;
-    },
-    get passingFiltersCount() {
-        return this.sortedFilteredRows.length;
-    },
-    get selectedCount() {
-        return this.selectedRows.length;
-    },
-    get selectedAndPassingFiltersCount() {
-        return this.selectedFilteredRows.length;
-    },
-    get sortedRows() {
-        const parent = getParent(self);
-        return [...self.rows].sort(parent.rowSortingComparisonFunction);
-    },
-    get selectedRows() {
-        return self.rows.filter(r => r.isSelected);
-    },
-    get selectedFilteredRows() {
-        const sheet = getParent(self);
-        const view = getParent(sheet);
-        const { filterControls } = view;
-        return this.selectedRows.filter(row => filterControls.rowPassesFilters(sheet, row));
-    },
-    // the set of all rows that pass the filters, sorted
-    get sortedFilteredRows() {
-        const sheet = getParent(self);
-        const view = getParent(sheet);
-        const { filterControls } = view;
-        return self.rows
-            .filter(row => filterControls.rowPassesFilters(sheet, row))
-            .sort(sheet.rowSortingComparisonFunction);
-    },
-}))
-    .actions(self => ({
-    unselectAll() {
-        self.rows.forEach(row => {
-            row.unSelect();
-        });
-    },
-}));
-export default StaticRowModel;