@jbrowse/plugin-spreadsheet-view 2.17.0 → 3.0.0

package/dist/SpreadsheetView/models/ColumnDataTypes/Number.js

@@ -1,126 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FilterModelType = exports.NumberColumn = void 0;
-const react_1 = __importDefault(require("react"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const MakeSpreadsheetColumnType_1 = __importDefault(require("./MakeSpreadsheetColumnType"));
-const OPERATIONS = [
-    'equals',
-    'greater than',
-    'less than',
-    'between',
-    'not between',
-];
-// NOTE: assembly names, if present, are ignored in all of these predicates
-const OPERATION_PREDICATES = {
-    equals: (numberInCell, firstNumber) => {
-        return numberInCell === firstNumber;
-    },
-    'greater than': (numberInCell, firstNumber) => {
-        return numberInCell > firstNumber;
-    },
-    'less than': (numberInCell, firstNumber) => {
-        return numberInCell < firstNumber;
-    },
-    between: (numberInCell, firstNumber, secondNumber) => {
-        return (numberInCell > firstNumber &&
-            secondNumber !== undefined &&
-            numberInCell < secondNumber);
-    },
-};
-OPERATION_PREDICATES['not between'] = (numberInCell, firstNumber, secondNumber) => {
-    return !OPERATION_PREDICATES.between(numberInCell, firstNumber, secondNumber);
-};
-const useStyles = (0, mui_1.makeStyles)()({
-    textFilterControlAdornment: { marginRight: '-18px' },
-    textFilterControl: {
-        '& .MuiInput-formControl': {
-            marginTop: 8,
-        },
-        '& .MuiInputLabel-formControl': {
-            top: '-7px',
-            '&.MuiInputLabel-shrink': {
-                top: '-3px',
-            },
-        },
-    },
-});
-// React component for the column filter control
-const FilterReactComponent = (0, mobx_react_1.observer)(({ filterModel }) => {
-    const { classes } = useStyles();
-    const operationChoices = OPERATIONS;
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(material_1.Select, { value: filterModel.operation, onChange: e => filterModel.setOperation(String(e.target.value)) }, operationChoices.map(name => (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name)))),
-        ' ',
-        react_1.default.createElement(material_1.TextField, { label: "number", placeholder: "123", type: "number", error: filterModel.firstNumberIsInvalid, defaultValue: filterModel.firstNumber, onChange: evt => {
-                filterModel.setFirstNumber(Number.parseFloat(evt.target.value));
-            }, className: classes.textFilterControl }),
-        filterModel.operation !== 'between' &&
-            filterModel.operation !== 'not between' ? null : (react_1.default.createElement(react_1.default.Fragment, null,
-            ' and ',
-            react_1.default.createElement(material_1.TextField, { label: "number", placeholder: "456", type: "number", error: filterModel.secondNumberIsInvalid, defaultValue: filterModel.secondNumber, onChange: evt => filterModel.setSecondNumber(Number.parseFloat(evt.target.value)), className: classes.textFilterControl })))));
-});
-// MST model for the column filter control
-const FilterModelType = mobx_state_tree_1.types
-    .model('ColumnNumberFilter', {
-    type: mobx_state_tree_1.types.literal('Number'),
-    columnNumber: mobx_state_tree_1.types.integer,
-    firstNumber: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-    secondNumber: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-    operation: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.enumeration(OPERATIONS), OPERATIONS[0]),
-})
-    .views(self => ({
-    // returns a function that tests the given row
-    get predicate() {
-        if (typeof self.firstNumber !== 'number') {
-            return function alwaysTrue() {
-                return true;
-            };
-        }
-        const { firstNumber, secondNumber, operation, columnNumber } = self; // avoid closing over self
-        return function stringPredicate(_sheet, row) {
-            const { cellsWithDerived } = row;
-            const cell = cellsWithDerived[columnNumber];
-            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
-                return false;
-            }
-            const parsedCellText = Number.parseFloat(cell.text);
-            if (typeof parsedCellText !== 'number') {
-                return false;
-            }
-            const predicate = OPERATION_PREDICATES[operation];
-            if (!predicate) {
-                throw new Error(`"${operation}" not implemented in location filter`);
-            }
-            return predicate(parsedCellText, firstNumber, secondNumber);
-        };
-    },
-}))
-    .actions(self => ({
-    setFirstNumber(n) {
-        self.firstNumber =
-            Number.isNaN(n) || typeof n !== 'number' ? undefined : n;
-    },
-    setSecondNumber(n) {
-        self.secondNumber =
-            Number.isNaN(n) || typeof n !== 'number' ? undefined : n;
-    },
-    setOperation(op) {
-        self.operation = op;
-    },
-}))
-    .volatile(() => ({ ReactComponent: FilterReactComponent }));
-exports.FilterModelType = FilterModelType;
-const NumberColumn = (0, MakeSpreadsheetColumnType_1.default)('Number', {
-    compare(cellA, cellB) {
-        return Number.parseFloat(cellA.text) - Number.parseFloat(cellB.text);
-    },
-    FilterModelType,
-});
-exports.NumberColumn = NumberColumn;

package/dist/SpreadsheetView/models/ColumnDataTypes/Text.d.ts

@@ -1,28 +0,0 @@
-import React from 'react';
-declare const ColumnTextFilter: import("mobx-state-tree").IModelType<{
-    type: import("mobx-state-tree").ISimpleType<"Text">;
-    columnNumber: import("mobx-state-tree").ISimpleType<number>;
-    stringToFind: import("mobx-state-tree").IType<string | undefined, string, string>;
-    operation: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-}, {
-    readonly predicate: (_sheet: any, row: any) => boolean;
-} & {
-    setString(s: string): void;
-    setOperation(op: string): void;
-} & {
-    ReactComponent: ({ filterModel }: {
-        filterModel: any;
-    }) => React.JSX.Element;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-declare const TextColumnType: import("mobx-state-tree").IModelType<{
-    type: import("mobx-state-tree").ISimpleType<string>;
-}, {
-    DataCellReactComponent: React.FC<any> | null;
-    FilterModelType: any;
-    displayName: string;
-    categoryName: string | undefined;
-} & {
-    compare: any;
-    readonly hasFilter: boolean;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export { TextColumnType as TextColumn, ColumnTextFilter as FilterModelType };

package/dist/SpreadsheetView/models/ColumnDataTypes/Text.js

@@ -1,129 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FilterModelType = exports.TextColumn = void 0;
-const react_1 = __importDefault(require("react"));
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const MakeSpreadsheetColumnType_1 = __importDefault(require("./MakeSpreadsheetColumnType"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mobx_react_1 = require("mobx-react");
-const mst_reflection_1 = require("@jbrowse/core/util/mst-reflection");
-// icons
-const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
-const OPERATIONS = [
-    'equals',
-    'contains',
-    'does not contain',
-    'does not equal',
-    'starts with',
-    'ends with',
-];
-// NOTE: assembly names, if present, are ignored in all of these predicates
-const OPERATION_PREDICATES = {
-    contains: (textInCell, stringToFind) => {
-        return textInCell.toLowerCase().includes(stringToFind);
-    },
-    equals: (textInCell, stringToFind) => {
-        return textInCell.toLowerCase() === stringToFind;
-    },
-    'starts with': (textInCell, stringToFind) => {
-        return textInCell.toLowerCase().startsWith(stringToFind);
-    },
-    'ends with': (textInCell, stringToFind) => {
-        const index = textInCell.toLowerCase().indexOf(stringToFind);
-        if (index === -1) {
-            return false;
-        }
-        return index === textInCell.length - stringToFind.length;
-    },
-};
-OPERATION_PREDICATES['does not contain'] = (textInCell, stringToFind) => {
-    return !OPERATION_PREDICATES.contains(textInCell, stringToFind);
-};
-OPERATION_PREDICATES['does not equal'] = (textInCell, stringToFind) => {
-    return !OPERATION_PREDICATES.equals(textInCell, stringToFind);
-};
-const useStyles = (0, mui_1.makeStyles)()({
-    textFilterControlAdornment: { marginRight: '-18px' },
-    textFilterControl: {
-        margin: 0,
-        '& .MuiInput-formControl': {
-            marginTop: 8,
-        },
-        '& .MuiInputLabel-formControl': {
-            top: '-7px',
-            '&.MuiInputLabel-shrink': {
-                top: '-3px',
-            },
-        },
-    },
-});
-// React component for the column filter control
-const FilterReactComponent = (0, mobx_react_1.observer)(({ filterModel }) => {
-    const { classes } = useStyles();
-    const operationChoices = (0, mst_reflection_1.getEnumerationValues)((0, mst_reflection_1.getSubType)((0, mst_reflection_1.getPropertyType)((0, mobx_state_tree_1.getPropertyMembers)(filterModel), 'operation')));
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(material_1.Select, { value: filterModel.operation, onChange: event => {
-                filterModel.setOperation(String(event.target.value));
-            } }, operationChoices.map(name => (react_1.default.createElement(material_1.MenuItem, { key: name, value: name }, name)))),
-        ' ',
-        react_1.default.createElement(material_1.TextField, { label: "text", value: filterModel.stringToFind, onChange: evt => filterModel.setString(evt.target.value), className: classes.textFilterControl, slotProps: {
-                input: {
-                    endAdornment: (react_1.default.createElement(material_1.InputAdornment, { className: classes.textFilterControlAdornment, position: "end" },
-                        react_1.default.createElement(material_1.IconButton, { "aria-label": "clear filter", onClick: () => filterModel.setString('') },
-                            react_1.default.createElement(Clear_1.default, null)))),
-                },
-            } })));
-});
-// MST model for the column filter control
-const ColumnTextFilter = mobx_state_tree_1.types
-    .model('ColumnTextFilter', {
-    type: mobx_state_tree_1.types.literal('Text'),
-    columnNumber: mobx_state_tree_1.types.integer,
-    stringToFind: '',
-    operation: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.enumeration(OPERATIONS), OPERATIONS[0]),
-})
-    .views(self => ({
-    // returns a function that tests the given row
-    get predicate() {
-        const { stringToFind, columnNumber, operation } = self; // avoid closing over self
-        if (!stringToFind) {
-            return function alwaysTrue() {
-                return true;
-            };
-        }
-        const s = stringToFind.toLowerCase(); // case insensitive match
-        return function stringPredicate(_sheet, row) {
-            const { cellsWithDerived } = row;
-            const cell = cellsWithDerived[columnNumber];
-            if (!(cell === null || cell === void 0 ? void 0 : cell.text)) {
-                return false;
-            }
-            const predicate = OPERATION_PREDICATES[operation];
-            if (!predicate) {
-                throw new Error(`"${operation}" not implemented in location filter`);
-            }
-            return predicate(cell.text, s);
-        };
-    },
-}))
-    .actions(self => ({
-    setString(s) {
-        self.stringToFind = s;
-    },
-    setOperation(op) {
-        self.operation = op;
-    },
-}))
-    .volatile(() => ({ ReactComponent: FilterReactComponent }));
-exports.FilterModelType = ColumnTextFilter;
-const TextColumnType = (0, MakeSpreadsheetColumnType_1.default)('Text', {
-    compare(cellA, cellB) {
-        return cellA.text.localeCompare(cellB.text);
-    },
-    FilterModelType: ColumnTextFilter,
-});
-exports.TextColumn = TextColumnType;

package/dist/SpreadsheetView/models/ColumnDataTypes/index.d.ts

@@ -1,71 +0,0 @@
-declare const ColumnTypes: {
-    Number: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    Text: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    LocString: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    LocRef: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    LocStart: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    LocEnd: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-};
-declare const AnyColumnType: import("mobx-state-tree").IAnyType;
-declare const AnyFilterModelType: import("mobx-state-tree").IAnyType;
-export { ColumnTypes, AnyColumnType, AnyFilterModelType };

package/dist/SpreadsheetView/models/ColumnDataTypes/index.js

@@ -1,37 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AnyFilterModelType = exports.AnyColumnType = exports.ColumnTypes = void 0;
-const LocString_1 = __importDefault(require("./LocString"));
-const LocRef_1 = __importDefault(require("./LocRef"));
-const LocStart_1 = __importDefault(require("./LocStart"));
-const LocEnd_1 = __importDefault(require("./LocEnd"));
-const Number_1 = require("./Number");
-const Text_1 = require("./Text");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const ColumnTypes = {
-    Number: Number_1.NumberColumn,
-    Text: Text_1.TextColumn,
-    LocString: LocString_1.default,
-    LocRef: LocRef_1.default,
-    LocStart: LocStart_1.default,
-    LocEnd: LocEnd_1.default,
-};
-exports.ColumnTypes = ColumnTypes;
-const allColumnTypes = Object.values(ColumnTypes);
-const AnyColumnType = mobx_state_tree_1.types.union(...allColumnTypes);
-exports.AnyColumnType = AnyColumnType;
-const AnyFilterModelType = mobx_state_tree_1.types.union(...allColumnTypes
-    .map(columnType => {
-    // just instantiate the blank types to get their filter model types
-    const { FilterModelType } = columnType.create({
-        // @ts-expect-error
-        type: columnType.properties.type.value,
-    });
-    return FilterModelType;
-})
-    // some column types might not have filter machinery, filter those out
-    .filter(t => !!t));
-exports.AnyFilterModelType = AnyFilterModelType;

package/dist/SpreadsheetView/models/FilterControls.d.ts

@@ -1,26 +0,0 @@
-import { AnyFilterModelType as AnyColumnFilter } from './ColumnDataTypes';
-declare const model: import("mobx-state-tree").IModelType<{
-    rowFullText: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<"RowFullText">;
-        stringToFind: import("mobx-state-tree").IType<string | undefined, string, string>;
-    }, {
-        readonly predicate: (_sheet: unknown, row: {
-            cellsWithDerived: {
-                text: string;
-            }[];
-        }) => boolean;
-    } & {
-        setString(s: string): void;
-        clear(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    columnFilters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-}, {
-    readonly filters: any[];
-    setRowFullTextFilter(stringToFind: string): void;
-    rowPassesFilters(sheet: unknown, row: unknown): boolean;
-} & {
-    addBlankColumnFilter(columnNumber: number): void;
-    removeColumnFilter(filter: typeof AnyColumnFilter): boolean;
-    clearAllFilters(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export default model;

package/dist/SpreadsheetView/models/FilterControls.js

@@ -1,85 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const mobx_state_tree_1 = require("mobx-state-tree");
-const ColumnDataTypes_1 = require("./ColumnDataTypes");
-// filter that finds a simple string in any of the cells of a row
-const RowFullTextFilter = mobx_state_tree_1.types
-    .model('RowFullTextFilter', {
-    type: mobx_state_tree_1.types.literal('RowFullText'),
-    stringToFind: '',
-})
-    .views(self => ({
-    // returns a function that tests the given row
-    get predicate() {
-        let s = self.stringToFind; // avoid closing over self
-        if (!s) {
-            return function alwaysTrue() {
-                return true;
-            };
-        }
-        s = s.toLowerCase();
-        return function stringPredicate(_sheet, row) {
-            const { cellsWithDerived } = row;
-            for (const cell of cellsWithDerived) {
-                // note: case insensitive
-                if (cell.text.toLowerCase().includes(s)) {
-                    return true;
-                }
-            }
-            return false;
-        };
-    },
-}))
-    .actions(self => ({
-    setString(s) {
-        self.stringToFind = s;
-    },
-    clear() {
-        self.stringToFind = '';
-    },
-}));
-const model = mobx_state_tree_1.types
-    .model('SpreadsheetFilterControls', {
-    rowFullText: mobx_state_tree_1.types.optional(RowFullTextFilter, () => ({
-        type: 'RowFullText',
-        stringToFind: '',
-    })),
-    columnFilters: mobx_state_tree_1.types.array(ColumnDataTypes_1.AnyFilterModelType),
-})
-    .views(self => ({
-    get filters() {
-        return [self.rowFullText, ...self.columnFilters].filter(f => !!f);
-    },
-    setRowFullTextFilter(stringToFind) {
-        // @ts-expect-error
-        self.rowFullText = {
-            type: 'RowFullText',
-            stringToFind,
-        };
-    },
-    rowPassesFilters(sheet, row) {
-        for (const filter of this.filters) {
-            if (!filter.predicate(sheet, row)) {
-                return false;
-            }
-        }
-        return true;
-    },
-}))
-    .actions(self => ({
-    addBlankColumnFilter(columnNumber) {
-        const { dataType } = (0, mobx_state_tree_1.getParent)(self).spreadsheet.columns[columnNumber];
-        self.columnFilters.push({
-            type: dataType.type,
-            columnNumber,
-        });
-    },
-    removeColumnFilter(filter) {
-        return self.columnFilters.remove(filter);
-    },
-    clearAllFilters() {
-        self.columnFilters.clear();
-        self.rowFullText.clear();
-    },
-}));
-exports.default = model;

package/dist/SpreadsheetView/models/ImportWizard.d.ts

@@ -1,31 +0,0 @@
-import { Instance } from 'mobx-state-tree';
-declare const ImportWizard: import("mobx-state-tree").IModelType<{
-    fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
-    selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-}, {
-    fileTypes: string[];
-    fileSource: any;
-    error: unknown;
-    loading: boolean;
-} & {
-    readonly isReadyToOpen: any;
-    readonly canCancel: any;
-    readonly fileName: any;
-    readonly requiresUnzip: any;
-    isValidRefName(refName: string, assemblyName?: string): boolean;
-} & {
-    setSelectedAssemblyName(s: string): void;
-    setFileSource(newSource: unknown): void;
-    toggleHasColumnNameLine(): void;
-    setColumnNameLineNumber(newnumber: number): void;
-    setFileType(typeName: string): void;
-    setError(error: unknown): void;
-    setLoaded(): void;
-    cancelButton(): void;
-    import(assemblyName: string): Promise<void>;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type ImportWizardStateModel = typeof ImportWizard;
-export type ImportWizardModel = Instance<ImportWizardStateModel>;
-export default ImportWizard;