@jbrowse/plugin-spreadsheet-view 2.17.0 → 3.0.0

package/dist/SpreadsheetView/models/ImportWizard.js

@@ -1,186 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const mobx_state_tree_1 = require("mobx-state-tree");
-const io_1 = require("@jbrowse/core/util/io");
-const util_1 = require("@jbrowse/core/util");
-// 30MB
-const IMPORT_SIZE_LIMIT = 30000000;
-const fileTypes = ['CSV', 'TSV', 'VCF', 'BED', 'BEDPE', 'STAR-Fusion'];
-const fileTypeParsers = {
-    CSV: () => Promise.resolve().then(() => __importStar(require('../importAdapters/ImportUtils'))).then(r => r.parseCsvBuffer),
-    TSV: () => Promise.resolve().then(() => __importStar(require('../importAdapters/ImportUtils'))).then(r => r.parseTsvBuffer),
-    VCF: () => Promise.resolve().then(() => __importStar(require('../importAdapters/VcfImport'))).then(r => r.parseVcfBuffer),
-    BED: () => Promise.resolve().then(() => __importStar(require('../importAdapters/BedImport'))).then(r => r.parseBedBuffer),
-    BEDPE: () => Promise.resolve().then(() => __importStar(require('../importAdapters/BedImport'))).then(r => r.parseBedPEBuffer),
-    'STAR-Fusion': () => Promise.resolve().then(() => __importStar(require('../importAdapters/STARFusionImport'))).then(r => r.parseSTARFusionBuffer),
-};
-// regexp used to guess the type of a file or URL from its file extension
-const fileTypesRegexp = new RegExp(`\\.(${fileTypes.join('|')})(\\.gz)?$`, 'i');
-/**
- * #stateModel SpreadsheetImportWizard
- * #category view
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
-const ImportWizard = mobx_state_tree_1.types
-    .model('SpreadsheetImportWizard', {
-    /**
-     * #property
-     */
-    fileType: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.enumeration(fileTypes), 'CSV'),
-    /**
-     * #property
-     */
-    hasColumnNameLine: true,
-    /**
-     * #property
-     */
-    columnNameLineNumber: 1,
-    /**
-     * #property
-     */
-    selectedAssemblyName: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-})
-    .volatile(() => ({
-    fileTypes,
-    fileSource: undefined,
-    error: undefined,
-    loading: false,
-}))
-    .views(self => ({
-    get isReadyToOpen() {
-        return (!self.error &&
-            self.fileSource &&
-            (self.fileSource.blobId ||
-                self.fileSource.localPath ||
-                self.fileSource.uri));
-    },
-    get canCancel() {
-        return (0, mobx_state_tree_1.getParent)(self).readyToDisplay;
-    },
-    get fileName() {
-        return (self.fileSource.uri ||
-            self.fileSource.localPath ||
-            (self.fileSource.blobId && self.fileSource.name));
-    },
-    get requiresUnzip() {
-        return this.fileName.endsWith('gz');
-    },
-    isValidRefName(refName, assemblyName) {
-        const { assemblyManager } = (0, util_1.getSession)(self);
-        if (!assemblyName) {
-            return false;
-        }
-        return assemblyManager.isValidRefName(refName, assemblyName);
-    },
-}))
-    .actions(self => ({
-    setSelectedAssemblyName(s) {
-        self.selectedAssemblyName = s;
-    },
-    setFileSource(newSource) {
-        var _a;
-        self.fileSource = newSource;
-        self.error = undefined;
-        if (self.fileSource) {
-            // try to autodetect the file type, ignore errors
-            const name = self.fileName;
-            if (name) {
-                const firstMatch = (_a = fileTypesRegexp.exec(name)) === null || _a === void 0 ? void 0 : _a[1];
-                if (firstMatch) {
-                    self.fileType =
-                        firstMatch === 'tsv' && name.includes('star-fusion')
-                            ? 'STAR-Fusion'
-                            : firstMatch.toUpperCase();
-                }
-            }
-        }
-    },
-    toggleHasColumnNameLine() {
-        self.hasColumnNameLine = !self.hasColumnNameLine;
-    },
-    setColumnNameLineNumber(newnumber) {
-        if (newnumber > 0) {
-            self.columnNameLineNumber = newnumber;
-        }
-    },
-    setFileType(typeName) {
-        self.fileType = typeName;
-    },
-    setError(error) {
-        console.error(error);
-        self.loading = false;
-        self.error = error;
-    },
-    setLoaded() {
-        self.loading = false;
-        self.error = undefined;
-    },
-    cancelButton() {
-        self.error = undefined;
-        (0, mobx_state_tree_1.getParent)(self).setDisplayMode();
-    },
-    // fetch and parse the file, make a new Spreadsheet model for it,
-    // then set the parent to display it
-    async import(assemblyName) {
-        if (!self.fileSource) {
-            return;
-        }
-        if (self.loading) {
-            throw new Error('Cannot import, load already in progress');
-        }
-        self.selectedAssemblyName = assemblyName;
-        self.loading = true;
-        const type = self.fileType;
-        const typeParser = await fileTypeParsers[type]();
-        const { unzip } = await Promise.resolve().then(() => __importStar(require('@gmod/bgzf-filehandle')));
-        const { pluginManager } = (0, util_1.getEnv)(self);
-        const filehandle = (0, io_1.openLocation)(self.fileSource, pluginManager);
-        try {
-            const stat = await filehandle.stat();
-            if (stat.size > IMPORT_SIZE_LIMIT) {
-                throw new Error(`File is too big. Tabular files are limited to at most ${(IMPORT_SIZE_LIMIT / 1000).toLocaleString()}kb.`);
-            }
-        }
-        catch (e) {
-            // not required for stat to succeed to proceed, but it is helpful
-            console.warn(e);
-        }
-        try {
-            await filehandle
-                .readFile()
-                .then(buffer => (self.requiresUnzip ? unzip(buffer) : buffer))
-                .then(buffer => typeParser(buffer, self))
-                .then(spreadsheet => {
-                this.setLoaded();
-                (0, mobx_state_tree_1.getParent)(self).displaySpreadsheet(spreadsheet);
-            });
-        }
-        catch (e) {
-            this.setError(e);
-        }
-    },
-}));
-exports.default = ImportWizard;

package/dist/SpreadsheetView/models/Row.d.ts

@@ -1,17 +0,0 @@
-declare const RowModel: import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").ISimpleType<string>;
-    cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        text: import("mobx-state-tree").ISimpleType<string>;
-        extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-    isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-}, {
-    toggleSelect(): void;
-    unSelect(): void;
-    select(): void;
-    setExtendedData(data: unknown): void;
-} & {
-    readonly cellsWithDerived: any;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export default RowModel;

package/dist/SpreadsheetView/models/Row.js

@@ -1,43 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const mobx_state_tree_1 = require("mobx-state-tree");
-const CellModel = mobx_state_tree_1.types.model('SpreadsheetCell', {
-    text: mobx_state_tree_1.types.string,
-    extendedData: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.frozen()),
-});
-const RowModel = mobx_state_tree_1.types
-    .model('SpreadsheetRow', {
-    id: mobx_state_tree_1.types.identifier,
-    cells: mobx_state_tree_1.types.array(CellModel),
-    extendedData: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.frozen()),
-    isSelected: false,
-})
-    .actions(self => ({
-    toggleSelect() {
-        self.isSelected = !self.isSelected;
-    },
-    unSelect() {
-        self.isSelected = false;
-    },
-    select() {
-        self.isSelected = true;
-    },
-    setExtendedData(data) {
-        self.extendedData = data;
-    },
-}))
-    .views(self => ({
-    get cellsWithDerived() {
-        const { columns } = (0, mobx_state_tree_1.getParent)(self, 3);
-        let i = 0;
-        return columns.map((column) => {
-            if (column.isDerived) {
-                return column.expr.evalSync({
-                    row: self,
-                });
-            }
-            return self.cells[i++];
-        });
-    },
-}));
-exports.default = RowModel;

package/dist/SpreadsheetView/models/Spreadsheet.d.ts

@@ -1,260 +0,0 @@
-import { SnapshotIn, Instance } from 'mobx-state-tree';
-import type RowModel from './Row';
-type Row = Instance<typeof RowModel>;
-type RowMenuPosition = {
-    anchorEl: Element;
-    rowNumber: string;
-} | null;
-declare const Spreadsheet: import("mobx-state-tree").IModelType<{
-    rowSet: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        isLoaded: import("mobx-state-tree").ISimpleType<true>;
-        rows: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").ISimpleType<string>;
-            cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        }, {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }, {
-        readonly count: number;
-        readonly passingFiltersCount: number;
-        readonly selectedCount: number;
-        readonly selectedAndPassingFiltersCount: number;
-        readonly sortedRows: ({
-            id: string;
-            cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-            extendedData: any;
-            isSelected: boolean;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").ISimpleType<string>;
-            cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        }, {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-        readonly selectedRows: ({
-            id: string;
-            cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-            extendedData: any;
-            isSelected: boolean;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").ISimpleType<string>;
-            cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        }, {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-        readonly selectedFilteredRows: ({
-            id: string;
-            cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-            extendedData: any;
-            isSelected: boolean;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").ISimpleType<string>;
-            cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        }, {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-        readonly sortedFilteredRows: ({
-            id: string;
-            cells: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-            extendedData: any;
-            isSelected: boolean;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").ISimpleType<string>;
-            cells: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-                text: import("mobx-state-tree").ISimpleType<string>;
-                extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            extendedData: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IType<any, any, any>>;
-            isSelected: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        }, {
-            toggleSelect(): void;
-            unSelect(): void;
-            select(): void;
-            setExtendedData(data: unknown): void;
-        } & {
-            readonly cellsWithDerived: any;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
-    } & {
-        unselectAll(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    columns: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        name: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        dataType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IAnyType, [undefined]>;
-        isDerived: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        derivationFunctionText: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    }, {
-        readonly expr: any;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    columnDisplayOrder: import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<number>>;
-    hasColumnNames: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    sortColumns: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        columnNumber: import("mobx-state-tree").ISimpleType<number>;
-        descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        switchDirection(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-}, {
-    defaultDataType: import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-    }, {
-        DataCellReactComponent: import("react").FC<any> | null;
-        FilterModelType: any;
-        displayName: string;
-        categoryName: string | undefined;
-    } & {
-        compare: any;
-        readonly hasFilter: boolean;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-    rowMenuPosition: RowMenuPosition;
-    isLoaded: boolean;
-} & {
-    /**
-     * #getter
-     */
-    readonly initialized: boolean | undefined;
-    /**
-     * #getter
-     */
-    readonly hideRowSelection: any;
-    /**
-     * #getter
-     * list of data type names to be made available in the column
-     * dropdown menu
-     */
-    readonly dataTypeChoices: {
-        typeName: "LocString" | "Text" | "LocRef" | "Number" | "LocStart" | "LocEnd";
-        displayName: string;
-        categoryName: string | undefined;
-    }[];
-    /**
-     * #method
-     */
-    rowSortingComparisonFunction(rowA: Row, rowB: Row): any;
-} & {
-    afterAttach(): void;
-    /**
-     * #action
-     */
-    setLoaded(flag: boolean): void;
-    /**
-     * #action
-     */
-    setRowMenuPosition(newPosition: RowMenuPosition): void;
-    /**
-     * #action
-     */
-    setSortColumns(newSort: NonNullable<SnapshotIn<import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-        columnNumber: import("mobx-state-tree").ISimpleType<number>;
-        descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        switchDirection(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        columnNumber: import("mobx-state-tree").ISimpleType<number>;
-        descending: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        switchDirection(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>>>): void;
-    /**
-     * #action
-     */
-    setColumnType(columnNumber: number, newTypeName: string): void;
-    /**
-     * #action
-     */
-    unselectAll(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type SpreadsheetStateModel = typeof Spreadsheet;
-export type SpreadsheetModel = Instance<SpreadsheetStateModel>;
-export default Spreadsheet;

package/dist/SpreadsheetView/models/Spreadsheet.js

@@ -1,174 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jexlStrings_1 = require("@jbrowse/core/util/jexlStrings");
-const util_1 = require("@jbrowse/core/util");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-// locals
-const ColumnDataTypes_1 = require("./ColumnDataTypes");
-const StaticRowSet_1 = __importDefault(require("./StaticRowSet"));
-const ColumnDefinition = mobx_state_tree_1.types
-    .model('ColumnDefinition', {
-    name: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-    dataType: mobx_state_tree_1.types.optional(ColumnDataTypes_1.AnyColumnType, () => ({
-        type: 'Text',
-    })),
-    // set to true if column is derived from other columns
-    // if the column is derived, each cell will have a
-    // `derivationFunction` that is called to get its value
-    isDerived: false,
-    // if this cell is derived from other cells, execute this function to get
-    // the value
-    derivationFunctionText: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-})
-    .views(self => ({
-    get expr() {
-        if (self.isDerived) {
-            // compile this as a jexl expression
-            return (0, jexlStrings_1.stringToJexlExpression)(String(self.derivationFunctionText), (0, util_1.getEnv)(self).pluginManager.jexl);
-        }
-        return undefined;
-    },
-}));
-/**
- * #stateModel SpreadsheetViewSpreadsheet
- * #category view
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
-const Spreadsheet = mobx_state_tree_1.types
-    .model('Spreadsheet', {
-    /**
-     * #property
-     */
-    rowSet: mobx_state_tree_1.types.optional(StaticRowSet_1.default, () => StaticRowSet_1.default.create()),
-    /**
-     * #property
-     */
-    columns: mobx_state_tree_1.types.array(ColumnDefinition),
-    /**
-     * #property
-     */
-    columnDisplayOrder: mobx_state_tree_1.types.array(mobx_state_tree_1.types.number),
-    /**
-     * #property
-     */
-    hasColumnNames: false,
-    /**
-     * #property
-     */
-    sortColumns: mobx_state_tree_1.types.array(mobx_state_tree_1.types
-        .model('SortColumns', {
-        columnNumber: mobx_state_tree_1.types.number,
-        descending: false,
-    })
-        .actions(self => ({
-        switchDirection() {
-            self.descending = !self.descending;
-        },
-    }))),
-    assemblyName: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-})
-    .volatile(() => ({
-    defaultDataType: ColumnDataTypes_1.ColumnTypes.Text,
-    rowMenuPosition: null,
-    isLoaded: false,
-}))
-    .views(self => ({
-    /**
-     * #getter
-     */
-    get initialized() {
-        var _a;
-        const session = (0, util_1.getSession)(self);
-        const name = self.assemblyName;
-        return name ? (_a = session.assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.initialized : false;
-    },
-    /**
-     * #getter
-     */
-    get hideRowSelection() {
-        // just delegates to parent
-        return (0, mobx_state_tree_1.getParent)(self).hideRowSelection;
-    },
-    /**
-     * #getter
-     * list of data type names to be made available in the column
-     * dropdown menu
-     */
-    get dataTypeChoices() {
-        const typeNames = Object.keys(ColumnDataTypes_1.ColumnTypes);
-        return typeNames.map(typeName => {
-            const dataType = ColumnDataTypes_1.ColumnTypes[typeName].create({ type: typeName });
-            const { displayName, categoryName } = dataType;
-            return { typeName, displayName, categoryName };
-        });
-    },
-    /**
-     * #method
-     */
-    rowSortingComparisonFunction(rowA, rowB) {
-        for (const { columnNumber, descending } of self.sortColumns) {
-            const { dataType } = self.columns[columnNumber];
-            const result = dataType.compare(rowA.cellsWithDerived[columnNumber], rowB.cellsWithDerived[columnNumber]);
-            if (result) {
-                return descending ? -result : result;
-            }
-        }
-        return 0;
-    },
-}))
-    .actions(self => ({
-    afterAttach() {
-        (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
-            const session = (0, util_1.getSession)(self);
-            const { assemblyManager } = session;
-            try {
-                if (self.assemblyName) {
-                    await assemblyManager.waitForAssembly(self.assemblyName);
-                    this.setLoaded(true);
-                }
-            }
-            catch (error) {
-                session.notify(`failed to load assembly ${self.assemblyName} ${error}`, 'error');
-            }
-        }));
-    },
-    /**
-     * #action
-     */
-    setLoaded(flag) {
-        self.isLoaded = flag;
-    },
-    /**
-     * #action
-     */
-    setRowMenuPosition(newPosition) {
-        self.rowMenuPosition = newPosition;
-    },
-    /**
-     * #action
-     */
-    setSortColumns(newSort) {
-        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
-        if (newSort) {
-            // @ts-expect-error
-            self.sortColumns = newSort;
-        }
-    },
-    /**
-     * #action
-     */
-    setColumnType(columnNumber, newTypeName) {
-        self.columns[columnNumber].dataType = { type: newTypeName };
-    },
-    /**
-     * #action
-     */
-    unselectAll() {
-        self.rowSet.unselectAll();
-    },
-}));
-exports.default = Spreadsheet;