@jbrowse/plugin-linear-genome-view 2.5.0 → 2.6.2

package/dist/LinearGenomeView/svgcomponents/SVGBackground.js

@@ -10,4 +10,3 @@ function SVGBackground({ width, height, shift, }) {
     return (react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: theme.palette.background.default }));
 }
 exports.default = SVGBackground;
-//# sourceMappingURL=SVGBackground.js.map

package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts

@@ -1,9 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
-type LGV = LinearGenomeViewModel;
 export default function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }: {
-    model: LGV;
+    model: LinearGenomeViewModel;
     rulerHeight: number;
     fontSize: number;
     cytobandHeight: number;
-}): JSX.Element;
-export {};
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js

@@ -25,15 +25,20 @@ function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }) {
         minimumBlockWidth: model.minimumBlockWidth,
     });
     const visibleRegions = model.dynamicBlocks.contentBlocks;
+    if (!visibleRegions.length) {
+        return null;
+    }
     overview.setVolatileWidth(width);
     overview.showAllRegions();
     const block = overview.dynamicBlocks.contentBlocks[0];
-    const first = visibleRegions[0];
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const first = visibleRegions.at(0);
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const last = visibleRegions.at(-1);
     const firstOverviewPx = overview.bpToPx({
         ...first,
         coord: first.reversed ? first.end : first.start,
     }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
     const lastOverviewPx = overview.bpToPx({
         ...last,
         coord: last.reversed ? last.start : last.end,
@@ -52,4 +57,3 @@ function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }) {
             react_1.default.createElement(SVGRuler_1.default, { model: model, fontSize: fontSize }))));
 }
 exports.default = SVGHeader;
-//# sourceMappingURL=SVGHeader.js.map

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js

@@ -33,7 +33,7 @@ async function renderToSvg(model, opts) {
     const height = totalHeight(tracks, textHeight, trackLabels) + offset + 100;
     const displayResults = await Promise.all(tracks.map(async (track) => {
         const display = track.displays[0];
-        await (0, mobx_1.when)(() => (display.ready !== undefined ? display.ready : true));
+        await (0, mobx_1.when)(() => !display.renderProps().notReady);
         return { track, result: await display.renderSvg({ ...opts, theme }) };
     }));
     const trackLabelMaxLen = (0, util_1.max)(tracks.map(t => (0, util_1.measureText)((0, tracks_1.getTrackName)(t.configuration, session), fontSize)), 0) + 40;
@@ -54,4 +54,3 @@ var SVGRuler_1 = require("./SVGRuler");
 Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return __importDefault(SVGRuler_1).default; } });
 var SVGTracks_2 = require("./SVGTracks");
 Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return __importDefault(SVGTracks_2).default; } });
-//# sourceMappingURL=SVGLinearGenomeView.js.map

package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRegionSeparators({ model, height, }: {
     height: number;
     model: LGV;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js

@@ -10,4 +10,3 @@ function SVGRegionSeparators({ model, height, }) {
     return (react_1.default.createElement(react_1.default.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(block => (react_1.default.createElement("rect", { key: block.key, x: block.offsetPx - offsetPx - interRegionPaddingWidth, width: interRegionPaddingWidth, y: 0, height: height, fill: "grey" })))));
 }
 exports.default = SVGRegionSeparators;
-//# sourceMappingURL=SVGRegionSeparators.js.map

package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRuler({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGRuler.js

@@ -48,4 +48,3 @@ function SVGRuler({ model, fontSize, }) {
         })));
 }
 exports.default = SVGRuler;
-//# sourceMappingURL=SVGRuler.js.map

package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGScalebar({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js

@@ -19,4 +19,3 @@ function SVGScalebar({ model, fontSize, }) {
         react_1.default.createElement("text", { x: x0 + (x1 - x0) / 2, y: fontSize * 2, textAnchor: "middle", fontSize: fontSize, fill: theme.palette.text.primary }, displayBp)));
 }
 exports.default = SVGScalebar;
-//# sourceMappingURL=SVGScalebar.js.map

package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts

@@ -1,7 +1,8 @@
+import React from 'react';
 export default function SVGTrackLabel({ trackLabels, trackName, fontSize, trackLabelOffset, x, }: {
     trackName: string;
     trackLabels: string;
     fontSize: number;
     trackLabelOffset: number;
     x: number;
-}): JSX.Element | null;
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js

@@ -13,4 +13,3 @@ function SVGTrackLabel({ trackLabels, trackName, fontSize, trackLabelOffset, x,
     return trackLabels !== 'none' ? (react_1.default.createElement("g", null, trackLabels === 'left' ? (react_1.default.createElement("text", { x: trackLabelOffset - 40, y: 20, fill: fill, fontSize: fontSize, dominantBaseline: "hanging", textAnchor: "end" }, trackName)) : (react_1.default.createElement("text", { x: x + xoff, y: yoff, fill: fill, fontSize: fontSize, dominantBaseline: "hanging" }, trackName)))) : null;
 }
 exports.default = SVGTrackLabel;
-//# sourceMappingURL=SVGTrackLabel.js.map

package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
@@ -18,5 +19,5 @@ export default function SVGTracks({ displayResults, model, offset, textHeight, f
     fontSize: number;
     trackLabels?: string;
     trackLabelOffset?: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGTracks.js

@@ -27,4 +27,3 @@ function SVGTracks({ displayResults, model, offset, textHeight, fontSize, trackL
     })));
 }
 exports.default = SVGTracks;
-//# sourceMappingURL=SVGTracks.js.map

package/dist/LinearGenomeView/util.d.ts

@@ -23,10 +23,10 @@ export declare function makeTicks(start: number, end: number, bpPerPx: number, e
 export declare function generateLocations(regions: ParsedLocString[] | undefined, assemblyManager: AssemblyManager, assemblyName?: string): Promise<{
     assemblyName: string;
     parentRegion: import("@jbrowse/core/assemblyManager/assembly").BasicRegion;
-    refName: string;
-    start?: number | undefined;
     end?: number | undefined;
     reversed?: boolean | undefined;
+    start?: number | undefined;
+    refName: string;
 }[]>;
 /**
  * Parses locString or space separated set of locStrings into location objects

package/dist/LinearGenomeView/util.js

@@ -142,4 +142,3 @@ function parseLocStrings(input, assemblyName, isValidRefName) {
     }
 }
 exports.parseLocStrings = parseLocStrings;
-//# sourceMappingURL=util.js.map