@jbrowse/plugin-linear-genome-view 2.5.0 → 2.6.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -1
- package/dist/BaseLinearDisplay/components/Block.d.ts +3 -3
- package/dist/BaseLinearDisplay/components/Block.js +0 -1
- package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
- package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -1
- package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
- package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -1
- package/dist/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
- package/dist/BaseLinearDisplay/components/Tooltip.js +0 -1
- package/dist/BaseLinearDisplay/index.d.ts +5 -2
- package/dist/BaseLinearDisplay/index.js +7 -2
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +34 -356
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +189 -0
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +55 -0
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +41 -0
- package/dist/BaseLinearDisplay/models/configSchema.js +1 -1
- package/dist/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
- package/dist/BaseLinearDisplay/models/renderSvg.js +82 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -17
- package/dist/BaseLinearDisplay/models/util.js +0 -1
- package/dist/BasicTrack/configSchema.js +1 -1
- package/dist/BasicTrack/index.js +0 -1
- package/dist/FeatureTrack/configSchema.d.ts +1 -3
- package/dist/FeatureTrack/configSchema.js +1 -1
- package/dist/FeatureTrack/index.js +0 -1
- package/dist/LaunchLinearGenomeView/index.js +0 -1
- package/dist/LinearBareDisplay/configSchema.d.ts +1 -0
- package/dist/LinearBareDisplay/configSchema.js +1 -1
- package/dist/LinearBareDisplay/index.js +0 -1
- package/dist/LinearBareDisplay/model.d.ts +52 -39
- package/dist/LinearBareDisplay/model.js +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +0 -1
- package/dist/LinearBasicDisplay/configSchema.d.ts +1 -0
- package/dist/LinearBasicDisplay/configSchema.js +1 -1
- package/dist/LinearBasicDisplay/index.js +0 -1
- package/dist/LinearBasicDisplay/model.d.ts +67 -66
- package/dist/LinearBasicDisplay/model.js +1 -1
- package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -1
- package/dist/LinearGenomeView/components/CenterLine.js +0 -1
- package/dist/LinearGenomeView/components/Cytobands.d.ts +2 -1
- package/dist/LinearGenomeView/components/Cytobands.js +0 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -1
- package/dist/LinearGenomeView/components/Gridlines.d.ts +2 -1
- package/dist/LinearGenomeView/components/Gridlines.js +0 -1
- package/dist/LinearGenomeView/components/Header.d.ts +2 -1
- package/dist/LinearGenomeView/components/Header.js +0 -1
- package/dist/LinearGenomeView/components/ImportForm.d.ts +2 -1
- package/dist/LinearGenomeView/components/ImportForm.js +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +28 -5
- package/dist/LinearGenomeView/components/MiniControls.d.ts +3 -2
- package/dist/LinearGenomeView/components/MiniControls.js +20 -41
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
- package/dist/LinearGenomeView/components/OverviewScalebar.js +10 -5
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +21 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +51 -0
- package/dist/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
- package/dist/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +110 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +58 -0
- package/dist/LinearGenomeView/components/Rubberband.d.ts +1 -1
- package/dist/LinearGenomeView/components/Rubberband.js +0 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -1
- package/dist/LinearGenomeView/components/Scalebar.js +0 -1
- package/dist/LinearGenomeView/components/SearchBox.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchBox.js +0 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -1
- package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -1
- package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -1
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +3 -3
- package/dist/LinearGenomeView/components/TrackContainer.js +12 -69
- package/dist/LinearGenomeView/components/TrackLabel.js +7 -12
- package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
- package/dist/LinearGenomeView/components/TrackLabelContainer.js +31 -0
- package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
- package/dist/LinearGenomeView/components/TrackRenderingContainer.js +73 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +2 -3
- package/dist/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
- package/dist/LinearGenomeView/components/VerticalGuide.js +0 -1
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +2 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +0 -1
- package/dist/LinearGenomeView/components/hooks.js +0 -1
- package/dist/LinearGenomeView/components/util.js +0 -1
- package/dist/LinearGenomeView/index.js +0 -1
- package/dist/LinearGenomeView/model.d.ts +13 -12
- package/dist/LinearGenomeView/model.js +25 -26
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +7 -3
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -2
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -1
- package/dist/LinearGenomeView/util.d.ts +2 -2
- package/dist/LinearGenomeView/util.js +0 -1
- package/dist/index.d.ts +160 -134
- package/dist/index.js +6 -4
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -1
- package/esm/BaseLinearDisplay/components/Block.d.ts +3 -3
- package/esm/BaseLinearDisplay/components/Block.js +0 -1
- package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
- package/esm/BaseLinearDisplay/components/BlockMsg.js +0 -1
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
- package/esm/BaseLinearDisplay/components/LinearBlocks.js +0 -1
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -1
- package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
- package/esm/BaseLinearDisplay/components/TooLargeMessage.js +0 -1
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
- package/esm/BaseLinearDisplay/components/Tooltip.js +0 -1
- package/esm/BaseLinearDisplay/index.d.ts +5 -2
- package/esm/BaseLinearDisplay/index.js +3 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +36 -335
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +183 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +52 -0
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +38 -0
- package/esm/BaseLinearDisplay/models/configSchema.js +1 -1
- package/esm/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
- package/esm/BaseLinearDisplay/models/renderSvg.js +53 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -17
- package/esm/BaseLinearDisplay/models/util.js +0 -1
- package/esm/BasicTrack/configSchema.js +1 -1
- package/esm/BasicTrack/index.js +0 -1
- package/esm/FeatureTrack/configSchema.d.ts +1 -3
- package/esm/FeatureTrack/configSchema.js +1 -1
- package/esm/FeatureTrack/index.js +0 -1
- package/esm/LaunchLinearGenomeView/index.js +0 -1
- package/esm/LinearBareDisplay/configSchema.d.ts +1 -0
- package/esm/LinearBareDisplay/configSchema.js +1 -1
- package/esm/LinearBareDisplay/index.js +0 -1
- package/esm/LinearBareDisplay/model.d.ts +52 -39
- package/esm/LinearBareDisplay/model.js +1 -1
- package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js +0 -1
- package/esm/LinearBasicDisplay/configSchema.d.ts +1 -0
- package/esm/LinearBasicDisplay/configSchema.js +1 -1
- package/esm/LinearBasicDisplay/index.js +0 -1
- package/esm/LinearBasicDisplay/model.d.ts +67 -66
- package/esm/LinearBasicDisplay/model.js +1 -1
- package/esm/LinearGenomeView/components/CenterLine.d.ts +2 -1
- package/esm/LinearGenomeView/components/CenterLine.js +0 -1
- package/esm/LinearGenomeView/components/Cytobands.d.ts +2 -1
- package/esm/LinearGenomeView/components/Cytobands.js +0 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +0 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.js +0 -1
- package/esm/LinearGenomeView/components/Gridlines.d.ts +2 -1
- package/esm/LinearGenomeView/components/Gridlines.js +0 -1
- package/esm/LinearGenomeView/components/Header.d.ts +2 -1
- package/esm/LinearGenomeView/components/Header.js +0 -1
- package/esm/LinearGenomeView/components/ImportForm.d.ts +2 -1
- package/esm/LinearGenomeView/components/ImportForm.js +0 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +4 -4
- package/esm/LinearGenomeView/components/MiniControls.d.ts +3 -2
- package/esm/LinearGenomeView/components/MiniControls.js +20 -18
- package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberband.js +0 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
- package/esm/LinearGenomeView/components/OverviewScalebar.js +10 -5
- package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +15 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +22 -0
- package/esm/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
- package/esm/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +82 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +49 -0
- package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
- package/esm/LinearGenomeView/components/Rubberband.js +0 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.js +0 -1
- package/esm/LinearGenomeView/components/Scalebar.js +0 -1
- package/esm/LinearGenomeView/components/SearchBox.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchBox.js +0 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +0 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.js +0 -1
- package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +0 -1
- package/esm/LinearGenomeView/components/TrackContainer.d.ts +3 -3
- package/esm/LinearGenomeView/components/TrackContainer.js +13 -70
- package/esm/LinearGenomeView/components/TrackLabel.js +7 -12
- package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
- package/esm/LinearGenomeView/components/TrackLabelContainer.js +26 -0
- package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
- package/esm/LinearGenomeView/components/TrackRenderingContainer.js +48 -0
- package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.js +2 -3
- package/esm/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
- package/esm/LinearGenomeView/components/VerticalGuide.js +0 -1
- package/esm/LinearGenomeView/components/ZoomControls.d.ts +2 -1
- package/esm/LinearGenomeView/components/ZoomControls.js +0 -1
- package/esm/LinearGenomeView/components/hooks.js +0 -1
- package/esm/LinearGenomeView/components/util.js +0 -1
- package/esm/LinearGenomeView/index.js +0 -1
- package/esm/LinearGenomeView/model.d.ts +13 -12
- package/esm/LinearGenomeView/model.js +21 -22
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +7 -3
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -2
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +0 -1
- package/esm/LinearGenomeView/util.d.ts +2 -2
- package/esm/LinearGenomeView/util.js +0 -1
- package/esm/index.d.ts +160 -134
- package/esm/index.js +1 -2
- package/package.json +3 -4
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +0 -1
- package/dist/BaseLinearDisplay/components/Block.js.map +0 -1
- package/dist/BaseLinearDisplay/components/BlockMsg.js.map +0 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +0 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +0 -1
- package/dist/BaseLinearDisplay/components/TooLargeMessage.js.map +0 -1
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +0 -1
- package/dist/BaseLinearDisplay/index.js.map +0 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +0 -1
- package/dist/BaseLinearDisplay/models/configSchema.js.map +0 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +0 -1
- package/dist/BaseLinearDisplay/models/util.js.map +0 -1
- package/dist/BasicTrack/configSchema.js.map +0 -1
- package/dist/BasicTrack/index.js.map +0 -1
- package/dist/FeatureTrack/configSchema.js.map +0 -1
- package/dist/FeatureTrack/index.js.map +0 -1
- package/dist/LaunchLinearGenomeView/index.js.map +0 -1
- package/dist/LinearBareDisplay/configSchema.js.map +0 -1
- package/dist/LinearBareDisplay/index.js.map +0 -1
- package/dist/LinearBareDisplay/model.js.map +0 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +0 -1
- package/dist/LinearBasicDisplay/configSchema.js.map +0 -1
- package/dist/LinearBasicDisplay/index.js.map +0 -1
- package/dist/LinearBasicDisplay/model.js.map +0 -1
- package/dist/LinearGenomeView/components/CenterLine.js.map +0 -1
- package/dist/LinearGenomeView/components/Cytobands.js.map +0 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/Gridlines.js.map +0 -1
- package/dist/LinearGenomeView/components/Header.js.map +0 -1
- package/dist/LinearGenomeView/components/HelpDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/ImportForm.js.map +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +0 -1
- package/dist/LinearGenomeView/components/MiniControls.js.map +0 -1
- package/dist/LinearGenomeView/components/OverviewRubberband.js.map +0 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.js.map +0 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +0 -189
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
- package/dist/LinearGenomeView/components/Rubberband.js.map +0 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.js.map +0 -1
- package/dist/LinearGenomeView/components/Scalebar.js.map +0 -1
- package/dist/LinearGenomeView/components/SearchBox.js.map +0 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/SearchResultsTable.js.map +0 -1
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/TrackContainer.js.map +0 -1
- package/dist/LinearGenomeView/components/TrackLabel.js.map +0 -1
- package/dist/LinearGenomeView/components/TracksContainer.js.map +0 -1
- package/dist/LinearGenomeView/components/VerticalGuide.js.map +0 -1
- package/dist/LinearGenomeView/components/ZoomControls.js.map +0 -1
- package/dist/LinearGenomeView/components/hooks.js.map +0 -1
- package/dist/LinearGenomeView/components/util.js.map +0 -1
- package/dist/LinearGenomeView/index.js.map +0 -1
- package/dist/LinearGenomeView/model.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +0 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js.map +0 -1
- package/dist/LinearGenomeView/util.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +0 -1
- package/esm/BaseLinearDisplay/components/Block.js.map +0 -1
- package/esm/BaseLinearDisplay/components/BlockMsg.js.map +0 -1
- package/esm/BaseLinearDisplay/components/LinearBlocks.js.map +0 -1
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +0 -1
- package/esm/BaseLinearDisplay/components/TooLargeMessage.js.map +0 -1
- package/esm/BaseLinearDisplay/components/Tooltip.js.map +0 -1
- package/esm/BaseLinearDisplay/index.js.map +0 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +0 -1
- package/esm/BaseLinearDisplay/models/configSchema.js.map +0 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +0 -1
- package/esm/BaseLinearDisplay/models/util.js.map +0 -1
- package/esm/BasicTrack/configSchema.js.map +0 -1
- package/esm/BasicTrack/index.js.map +0 -1
- package/esm/FeatureTrack/configSchema.js.map +0 -1
- package/esm/FeatureTrack/index.js.map +0 -1
- package/esm/LaunchLinearGenomeView/index.js.map +0 -1
- package/esm/LinearBareDisplay/configSchema.js.map +0 -1
- package/esm/LinearBareDisplay/index.js.map +0 -1
- package/esm/LinearBareDisplay/model.js.map +0 -1
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map +0 -1
- package/esm/LinearBasicDisplay/configSchema.js.map +0 -1
- package/esm/LinearBasicDisplay/index.js.map +0 -1
- package/esm/LinearBasicDisplay/model.js.map +0 -1
- package/esm/LinearGenomeView/components/CenterLine.js.map +0 -1
- package/esm/LinearGenomeView/components/Cytobands.js.map +0 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/Gridlines.js.map +0 -1
- package/esm/LinearGenomeView/components/Header.js.map +0 -1
- package/esm/LinearGenomeView/components/HelpDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/ImportForm.js.map +0 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +0 -1
- package/esm/LinearGenomeView/components/MiniControls.js.map +0 -1
- package/esm/LinearGenomeView/components/OverviewRubberband.js.map +0 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.js.map +0 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +0 -161
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
- package/esm/LinearGenomeView/components/Rubberband.js.map +0 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.js.map +0 -1
- package/esm/LinearGenomeView/components/Scalebar.js.map +0 -1
- package/esm/LinearGenomeView/components/SearchBox.js.map +0 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.js.map +0 -1
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/TrackContainer.js.map +0 -1
- package/esm/LinearGenomeView/components/TrackLabel.js.map +0 -1
- package/esm/LinearGenomeView/components/TracksContainer.js.map +0 -1
- package/esm/LinearGenomeView/components/VerticalGuide.js.map +0 -1
- package/esm/LinearGenomeView/components/ZoomControls.js.map +0 -1
- package/esm/LinearGenomeView/components/hooks.js.map +0 -1
- package/esm/LinearGenomeView/components/util.js.map +0 -1
- package/esm/LinearGenomeView/index.js.map +0 -1
- package/esm/LinearGenomeView/model.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +0 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js.map +0 -1
- package/esm/LinearGenomeView/util.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +0 -117
- package/src/BaseLinearDisplay/components/Block.tsx +0 -77
- package/src/BaseLinearDisplay/components/BlockMsg.tsx +0 -42
- package/src/BaseLinearDisplay/components/LinearBlocks.tsx +0 -119
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +0 -69
- package/src/BaseLinearDisplay/components/TooLargeMessage.tsx +0 -36
- package/src/BaseLinearDisplay/components/Tooltip.tsx +0 -107
- package/src/BaseLinearDisplay/index.ts +0 -12
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +0 -768
- package/src/BaseLinearDisplay/models/configSchema.ts +0 -59
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +0 -318
- package/src/BaseLinearDisplay/models/util.ts +0 -67
- package/src/BasicTrack/configSchema.ts +0 -23
- package/src/BasicTrack/index.ts +0 -18
- package/src/FeatureTrack/configSchema.ts +0 -27
- package/src/FeatureTrack/index.ts +0 -18
- package/src/LaunchLinearGenomeView/index.ts +0 -66
- package/src/LinearBareDisplay/configSchema.ts +0 -27
- package/src/LinearBareDisplay/index.test.js +0 -34
- package/src/LinearBareDisplay/index.ts +0 -25
- package/src/LinearBareDisplay/model.ts +0 -53
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +0 -73
- package/src/LinearBasicDisplay/configSchema.ts +0 -27
- package/src/LinearBasicDisplay/index.ts +0 -25
- package/src/LinearBasicDisplay/model.ts +0 -214
- package/src/LinearGenomeView/README.md +0 -9
- package/src/LinearGenomeView/components/CenterLine.tsx +0 -65
- package/src/LinearGenomeView/components/Cytobands.tsx +0 -154
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +0 -149
- package/src/LinearGenomeView/components/GetSequenceDialog.tsx +0 -269
- package/src/LinearGenomeView/components/Gridlines.tsx +0 -119
- package/src/LinearGenomeView/components/Header.tsx +0 -126
- package/src/LinearGenomeView/components/HelpDialog.tsx +0 -69
- package/src/LinearGenomeView/components/ImportForm.tsx +0 -217
- package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +0 -167
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +0 -72
- package/src/LinearGenomeView/components/MiniControls.tsx +0 -55
- package/src/LinearGenomeView/components/OverviewRubberband.tsx +0 -219
- package/src/LinearGenomeView/components/OverviewScalebar.tsx +0 -345
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +0 -321
- package/src/LinearGenomeView/components/Rubberband.tsx +0 -89
- package/src/LinearGenomeView/components/RubberbandSpan.tsx +0 -99
- package/src/LinearGenomeView/components/Scalebar.test.tsx +0 -145
- package/src/LinearGenomeView/components/Scalebar.tsx +0 -199
- package/src/LinearGenomeView/components/SearchBox.tsx +0 -123
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +0 -57
- package/src/LinearGenomeView/components/SearchResultsTable.tsx +0 -121
- package/src/LinearGenomeView/components/SequenceSearchDialog.tsx +0 -136
- package/src/LinearGenomeView/components/TrackContainer.tsx +0 -180
- package/src/LinearGenomeView/components/TrackLabel.tsx +0 -143
- package/src/LinearGenomeView/components/TracksContainer.tsx +0 -114
- package/src/LinearGenomeView/components/VerticalGuide.tsx +0 -37
- package/src/LinearGenomeView/components/ZoomControls.tsx +0 -62
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +0 -1520
- package/src/LinearGenomeView/components/hooks.ts +0 -306
- package/src/LinearGenomeView/components/util.ts +0 -76
- package/src/LinearGenomeView/hg38DisplayedRegions.json +0 -3187
- package/src/LinearGenomeView/index.test.ts +0 -993
- package/src/LinearGenomeView/index.ts +0 -17
- package/src/LinearGenomeView/model.ts +0 -1532
- package/src/LinearGenomeView/svgcomponents/SVGBackground.tsx +0 -21
- package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +0 -93
- package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +0 -114
- package/src/LinearGenomeView/svgcomponents/SVGRegionSeparators.tsx +0 -31
- package/src/LinearGenomeView/svgcomponents/SVGRuler.tsx +0 -125
- package/src/LinearGenomeView/svgcomponents/SVGScalebar.tsx +0 -57
- package/src/LinearGenomeView/svgcomponents/SVGTrackLabel.tsx +0 -47
- package/src/LinearGenomeView/svgcomponents/SVGTracks.tsx +0 -67
- package/src/LinearGenomeView/util.test.ts +0 -33
- package/src/LinearGenomeView/util.ts +0 -182
- package/src/LinearGenomeView/volvoxDisplayedRegions.json +0 -16
- package/src/index.ts +0 -85
|
@@ -2,6 +2,7 @@
|
|
|
2
2
|
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
3
3
|
/**
|
|
4
4
|
* #stateModel LinearBareDisplay
|
|
5
|
+
* #category display
|
|
5
6
|
* extends `BaseLinearDisplay`
|
|
6
7
|
*/
|
|
7
8
|
export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
|
|
@@ -10,6 +11,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
10
11
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
11
12
|
} & {
|
|
12
13
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
14
|
+
} & {
|
|
15
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
16
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
17
|
+
} & {
|
|
13
18
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
14
19
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
15
20
|
region: import("mobx-state-tree").IModelType<{
|
|
@@ -56,8 +61,6 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
56
61
|
reload(): void;
|
|
57
62
|
beforeDestroy(): void;
|
|
58
63
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
59
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
60
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
61
64
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
62
65
|
maxFeatureScreenDensity: {
|
|
63
66
|
type: string;
|
|
@@ -95,6 +98,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
95
98
|
}, {
|
|
96
99
|
rendererTypeName: string;
|
|
97
100
|
error: unknown;
|
|
101
|
+
message: string | undefined; /**
|
|
102
|
+
* #property
|
|
103
|
+
*/
|
|
98
104
|
} & {
|
|
99
105
|
readonly RenderingComponent: import("react").FC<{
|
|
100
106
|
model: {
|
|
@@ -104,6 +110,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
104
110
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
105
111
|
rendererTypeName: string;
|
|
106
112
|
error: unknown;
|
|
113
|
+
message: string | undefined;
|
|
107
114
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
108
115
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
109
116
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -111,6 +118,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
111
118
|
}, {
|
|
112
119
|
rendererTypeName: string;
|
|
113
120
|
error: unknown;
|
|
121
|
+
message: string | undefined;
|
|
114
122
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
115
123
|
onHorizontalScroll?: Function | undefined;
|
|
116
124
|
blockState?: Record<string, any> | undefined;
|
|
@@ -123,6 +131,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
123
131
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
124
132
|
rendererTypeName: string;
|
|
125
133
|
error: unknown;
|
|
134
|
+
message: string | undefined;
|
|
126
135
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
127
136
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
128
137
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -130,6 +139,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
130
139
|
}, {
|
|
131
140
|
rendererTypeName: string;
|
|
132
141
|
error: unknown;
|
|
142
|
+
message: string | undefined;
|
|
133
143
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
134
144
|
}> | null;
|
|
135
145
|
readonly adapterConfig: any;
|
|
@@ -139,21 +149,49 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
139
149
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
140
150
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
141
151
|
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
142
|
-
regionCannotBeRendered():
|
|
152
|
+
regionCannotBeRendered(): null;
|
|
143
153
|
} & {
|
|
154
|
+
setMessage(arg?: string | undefined): void;
|
|
144
155
|
setError(error?: unknown): void;
|
|
145
156
|
setRpcDriverName(rpcDriverName: string): void;
|
|
146
157
|
reload(): void;
|
|
147
158
|
} & {
|
|
148
|
-
currBpPerPx: number;
|
|
149
159
|
scrollTop: number;
|
|
150
|
-
|
|
151
|
-
|
|
152
|
-
|
|
160
|
+
} & {
|
|
161
|
+
readonly height: number;
|
|
162
|
+
} & {
|
|
163
|
+
setScrollTop(scrollTop: number): void;
|
|
164
|
+
setHeight(displayHeight: number): number;
|
|
165
|
+
resizeHeight(distance: number): number;
|
|
166
|
+
} & {
|
|
153
167
|
featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
|
|
154
168
|
featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
|
|
169
|
+
currStatsBpPerPx: number;
|
|
170
|
+
} & {
|
|
171
|
+
readonly currentBytesRequested: number;
|
|
172
|
+
readonly currentFeatureScreenDensity: number;
|
|
173
|
+
readonly maxFeatureScreenDensity: any;
|
|
174
|
+
readonly featureDensityStatsReady: boolean;
|
|
175
|
+
readonly maxAllowableBytes: number;
|
|
176
|
+
} & {
|
|
177
|
+
afterAttach(): void;
|
|
178
|
+
} & {
|
|
179
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
180
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
181
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
182
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
183
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
184
|
+
clearFeatureDensityStats(): void;
|
|
185
|
+
} & {
|
|
186
|
+
readonly regionTooLarge: boolean;
|
|
187
|
+
readonly regionTooLargeReason: string;
|
|
188
|
+
} & {
|
|
189
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
190
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
|
|
191
|
+
} & {
|
|
192
|
+
featureIdUnderMouse: string | undefined;
|
|
193
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
155
194
|
} & {
|
|
156
|
-
readonly height: number;
|
|
157
195
|
readonly blockType: "dynamicBlocks" | "staticBlocks";
|
|
158
196
|
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
159
197
|
} & {
|
|
@@ -167,49 +205,22 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
167
205
|
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
168
206
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
169
207
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
170
|
-
readonly currentBytesRequested: number;
|
|
171
|
-
readonly currentFeatureScreenDensity: number;
|
|
172
|
-
readonly maxFeatureScreenDensity: any;
|
|
173
|
-
readonly featureDensityStatsReady: boolean;
|
|
174
|
-
readonly maxAllowableBytes: number;
|
|
175
|
-
} & {
|
|
176
|
-
setMessage(message: string): void;
|
|
177
208
|
} & {
|
|
178
|
-
afterAttach(): void;
|
|
179
|
-
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
180
|
-
setFeatureDensityStatsP(arg: any): void;
|
|
181
|
-
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
182
|
-
clearFeatureDensityStats(): void;
|
|
183
|
-
setHeight(displayHeight: number): number;
|
|
184
|
-
resizeHeight(distance: number): number;
|
|
185
|
-
setScrollTop(scrollTop: number): void;
|
|
186
|
-
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
187
209
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
188
|
-
setCurrBpPerPx(n: number): void;
|
|
189
210
|
deleteBlock(key: string): void;
|
|
190
211
|
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
191
212
|
clearFeatureSelection(): void;
|
|
192
213
|
setFeatureIdUnderMouse(feature?: string | undefined): void;
|
|
193
|
-
reload(): void;
|
|
194
214
|
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
195
|
-
} & {
|
|
196
|
-
readonly regionTooLarge: boolean;
|
|
197
|
-
readonly regionTooLargeReason: string;
|
|
198
215
|
} & {
|
|
199
216
|
reload(): Promise<void>;
|
|
200
217
|
} & {
|
|
201
|
-
afterAttach(): void;
|
|
202
|
-
} & {
|
|
203
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
204
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
|
|
205
218
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
206
219
|
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
207
220
|
renderProps(): any;
|
|
208
221
|
} & {
|
|
209
|
-
renderSvg(opts: import("../
|
|
210
|
-
|
|
211
|
-
theme: import("@mui/material").ThemeOptions;
|
|
212
|
-
}): Promise<JSX.Element>;
|
|
222
|
+
renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
223
|
+
afterAttach(): void;
|
|
213
224
|
} & {
|
|
214
225
|
/**
|
|
215
226
|
* #method
|
|
@@ -227,6 +238,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
227
238
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
228
239
|
} & {
|
|
229
240
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
241
|
+
} & {
|
|
242
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
243
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
244
|
+
} & {
|
|
230
245
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
231
246
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
232
247
|
region: import("mobx-state-tree").IModelType<{
|
|
@@ -273,8 +288,6 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
273
288
|
reload(): void;
|
|
274
289
|
beforeDestroy(): void;
|
|
275
290
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
276
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
277
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
278
291
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
279
292
|
maxFeatureScreenDensity: {
|
|
280
293
|
type: string;
|
|
@@ -7,6 +7,7 @@ const mobx_state_tree_1 = require("mobx-state-tree");
|
|
|
7
7
|
const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
|
|
8
8
|
/**
|
|
9
9
|
* #stateModel LinearBareDisplay
|
|
10
|
+
* #category display
|
|
10
11
|
* extends `BaseLinearDisplay`
|
|
11
12
|
*/
|
|
12
13
|
function stateModelFactory(configSchema) {
|
|
@@ -45,4 +46,3 @@ function stateModelFactory(configSchema) {
|
|
|
45
46
|
});
|
|
46
47
|
}
|
|
47
48
|
exports.stateModelFactory = stateModelFactory;
|
|
48
|
-
//# sourceMappingURL=model.js.map
|
|
@@ -1,9 +1,10 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
declare function SetMaxHeightDlg({ model, handleClose, }: {
|
|
2
3
|
model: {
|
|
3
4
|
maxHeight?: number;
|
|
4
5
|
setMaxHeight: (arg?: number) => void;
|
|
5
6
|
};
|
|
6
7
|
handleClose: () => void;
|
|
7
|
-
}): JSX.Element;
|
|
8
|
+
}): React.JSX.Element;
|
|
8
9
|
declare const _default: typeof SetMaxHeightDlg;
|
|
9
10
|
export default _default;
|
|
@@ -49,4 +49,3 @@ function SetMaxHeightDlg({ model, handleClose, }) {
|
|
|
49
49
|
react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
|
|
50
50
|
}
|
|
51
51
|
exports.default = (0, mobx_react_1.observer)(SetMaxHeightDlg);
|
|
52
|
-
//# sourceMappingURL=SetMaxHeight.js.map
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
/**
|
|
3
3
|
* #config LinearBasicDisplay
|
|
4
|
+
* #category display
|
|
4
5
|
*/
|
|
5
6
|
declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
6
7
|
/**
|
|
@@ -4,6 +4,7 @@ const configuration_1 = require("@jbrowse/core/configuration");
|
|
|
4
4
|
const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
|
|
5
5
|
/**
|
|
6
6
|
* #config LinearBasicDisplay
|
|
7
|
+
* #category display
|
|
7
8
|
*/
|
|
8
9
|
function configSchemaFactory(pluginManager) {
|
|
9
10
|
return (0, configuration_1.ConfigurationSchema)('LinearBasicDisplay', {
|
|
@@ -20,4 +21,3 @@ function configSchemaFactory(pluginManager) {
|
|
|
20
21
|
});
|
|
21
22
|
}
|
|
22
23
|
exports.default = configSchemaFactory;
|
|
23
|
-
//# sourceMappingURL=configSchema.js.map
|
|
@@ -27,4 +27,3 @@ var model_2 = require("./model");
|
|
|
27
27
|
Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
|
|
28
28
|
var configSchema_2 = require("./configSchema");
|
|
29
29
|
Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });
|
|
30
|
-
//# sourceMappingURL=index.js.map
|
|
@@ -4,6 +4,7 @@ import { MenuItem } from '@jbrowse/core/ui';
|
|
|
4
4
|
import { Instance } from 'mobx-state-tree';
|
|
5
5
|
/**
|
|
6
6
|
* #stateModel LinearBasicDisplay
|
|
7
|
+
* #category display
|
|
7
8
|
* used by `FeatureTrack`, has simple settings like "show/hide feature labels",
|
|
8
9
|
* etc.
|
|
9
10
|
*/
|
|
@@ -13,12 +14,14 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
13
14
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
14
15
|
} & {
|
|
15
16
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
17
|
+
} & {
|
|
18
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
19
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
20
|
+
} & {
|
|
16
21
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
17
22
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
18
23
|
region: import("mobx-state-tree").IModelType<{
|
|
19
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
20
|
-
* #property
|
|
21
|
-
*/
|
|
24
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
22
25
|
start: import("mobx-state-tree").ISimpleType<number>;
|
|
23
26
|
end: import("mobx-state-tree").ISimpleType<number>;
|
|
24
27
|
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
@@ -32,9 +35,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
32
35
|
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
33
36
|
}, {
|
|
34
37
|
renderInProgress: AbortController | undefined;
|
|
35
|
-
filled: boolean;
|
|
36
|
-
* #property
|
|
37
|
-
*/
|
|
38
|
+
filled: boolean;
|
|
38
39
|
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
39
40
|
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
40
41
|
layout: any;
|
|
@@ -51,7 +52,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
51
52
|
afterAttach(): void;
|
|
52
53
|
setStatus(message: string): void;
|
|
53
54
|
setLoading(abortController: AbortController): void;
|
|
54
|
-
setMessage(messageText: string): void;
|
|
55
|
+
setMessage(messageText: string): void; /**
|
|
56
|
+
* #method
|
|
57
|
+
*/
|
|
55
58
|
setRendered(props: {
|
|
56
59
|
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
57
60
|
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
@@ -63,11 +66,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
63
66
|
reload(): void;
|
|
64
67
|
beforeDestroy(): void;
|
|
65
68
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
66
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
67
|
-
/**
|
|
68
|
-
* #getter
|
|
69
|
-
*/
|
|
70
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
71
69
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
72
70
|
maxFeatureScreenDensity: {
|
|
73
71
|
type: string;
|
|
@@ -123,17 +121,19 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
123
121
|
}, {
|
|
124
122
|
rendererTypeName: string;
|
|
125
123
|
error: unknown;
|
|
124
|
+
message: string | undefined;
|
|
126
125
|
} & {
|
|
127
126
|
readonly RenderingComponent: import("react").FC<{
|
|
128
127
|
model: {
|
|
129
128
|
id: string;
|
|
130
129
|
type: string;
|
|
131
|
-
rpcDriverName: string | undefined;
|
|
132
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
133
|
-
rendererTypeName: string; /**
|
|
130
|
+
rpcDriverName: string | undefined; /**
|
|
134
131
|
* #property
|
|
135
132
|
*/
|
|
133
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
134
|
+
rendererTypeName: string;
|
|
136
135
|
error: unknown;
|
|
136
|
+
message: string | undefined;
|
|
137
137
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
138
138
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
139
139
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -141,6 +141,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
141
141
|
}, {
|
|
142
142
|
rendererTypeName: string;
|
|
143
143
|
error: unknown;
|
|
144
|
+
message: string | undefined;
|
|
144
145
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
145
146
|
onHorizontalScroll?: Function | undefined;
|
|
146
147
|
blockState?: Record<string, any> | undefined;
|
|
@@ -153,17 +154,19 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
153
154
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
154
155
|
rendererTypeName: string;
|
|
155
156
|
error: unknown;
|
|
157
|
+
message: string | undefined;
|
|
156
158
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
157
159
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
158
160
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
159
161
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
160
162
|
}, {
|
|
161
|
-
rendererTypeName: string;
|
|
163
|
+
rendererTypeName: string; /**
|
|
164
|
+
* #action
|
|
165
|
+
*/
|
|
162
166
|
error: unknown;
|
|
167
|
+
message: string | undefined;
|
|
163
168
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
164
|
-
}> | null;
|
|
165
|
-
* #action
|
|
166
|
-
*/
|
|
169
|
+
}> | null;
|
|
167
170
|
readonly adapterConfig: any;
|
|
168
171
|
readonly parentTrack: any;
|
|
169
172
|
renderProps(): any;
|
|
@@ -171,21 +174,49 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
171
174
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
172
175
|
trackMenuItems(): MenuItem[];
|
|
173
176
|
readonly viewMenuActions: MenuItem[];
|
|
174
|
-
regionCannotBeRendered():
|
|
177
|
+
regionCannotBeRendered(): null;
|
|
175
178
|
} & {
|
|
179
|
+
setMessage(arg?: string | undefined): void;
|
|
176
180
|
setError(error?: unknown): void;
|
|
177
181
|
setRpcDriverName(rpcDriverName: string): void;
|
|
178
182
|
reload(): void;
|
|
179
183
|
} & {
|
|
180
|
-
currBpPerPx: number;
|
|
181
184
|
scrollTop: number;
|
|
182
|
-
|
|
183
|
-
|
|
184
|
-
|
|
185
|
+
} & {
|
|
186
|
+
readonly height: number;
|
|
187
|
+
} & {
|
|
188
|
+
setScrollTop(scrollTop: number): void;
|
|
189
|
+
setHeight(displayHeight: number): number;
|
|
190
|
+
resizeHeight(distance: number): number;
|
|
191
|
+
} & {
|
|
185
192
|
featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
|
|
186
193
|
featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
|
|
194
|
+
currStatsBpPerPx: number;
|
|
195
|
+
} & {
|
|
196
|
+
readonly currentBytesRequested: number;
|
|
197
|
+
readonly currentFeatureScreenDensity: number;
|
|
198
|
+
readonly maxFeatureScreenDensity: any;
|
|
199
|
+
readonly featureDensityStatsReady: boolean;
|
|
200
|
+
readonly maxAllowableBytes: number;
|
|
201
|
+
} & {
|
|
202
|
+
afterAttach(): void;
|
|
203
|
+
} & {
|
|
204
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
205
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
206
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
207
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
208
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
209
|
+
clearFeatureDensityStats(): void;
|
|
210
|
+
} & {
|
|
211
|
+
readonly regionTooLarge: boolean;
|
|
212
|
+
readonly regionTooLargeReason: string;
|
|
213
|
+
} & {
|
|
214
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
215
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
|
|
216
|
+
} & {
|
|
217
|
+
featureIdUnderMouse: string | undefined;
|
|
218
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
187
219
|
} & {
|
|
188
|
-
readonly height: number;
|
|
189
220
|
readonly blockType: "dynamicBlocks" | "staticBlocks";
|
|
190
221
|
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
191
222
|
} & {
|
|
@@ -199,49 +230,22 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
199
230
|
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
200
231
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
201
232
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
202
|
-
readonly currentBytesRequested: number;
|
|
203
|
-
readonly currentFeatureScreenDensity: number;
|
|
204
|
-
readonly maxFeatureScreenDensity: any;
|
|
205
|
-
readonly featureDensityStatsReady: boolean;
|
|
206
|
-
readonly maxAllowableBytes: number;
|
|
207
|
-
} & {
|
|
208
|
-
setMessage(message: string): void;
|
|
209
233
|
} & {
|
|
210
|
-
afterAttach(): void;
|
|
211
|
-
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
212
|
-
setFeatureDensityStatsP(arg: any): void;
|
|
213
|
-
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
214
|
-
clearFeatureDensityStats(): void;
|
|
215
|
-
setHeight(displayHeight: number): number;
|
|
216
|
-
resizeHeight(distance: number): number;
|
|
217
|
-
setScrollTop(scrollTop: number): void;
|
|
218
|
-
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
219
234
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
220
|
-
setCurrBpPerPx(n: number): void;
|
|
221
235
|
deleteBlock(key: string): void;
|
|
222
236
|
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
223
237
|
clearFeatureSelection(): void;
|
|
224
238
|
setFeatureIdUnderMouse(feature?: string | undefined): void;
|
|
225
|
-
reload(): void;
|
|
226
239
|
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
227
|
-
} & {
|
|
228
|
-
readonly regionTooLarge: boolean;
|
|
229
|
-
readonly regionTooLargeReason: string;
|
|
230
240
|
} & {
|
|
231
241
|
reload(): Promise<void>;
|
|
232
242
|
} & {
|
|
233
|
-
afterAttach(): void;
|
|
234
|
-
} & {
|
|
235
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
236
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
|
|
237
243
|
trackMenuItems(): MenuItem[];
|
|
238
244
|
contextMenuItems(): MenuItem[];
|
|
239
245
|
renderProps(): any;
|
|
240
246
|
} & {
|
|
241
|
-
renderSvg(opts: import("../
|
|
242
|
-
|
|
243
|
-
theme: import("@mui/material").ThemeOptions;
|
|
244
|
-
}): Promise<JSX.Element>;
|
|
247
|
+
renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
248
|
+
afterAttach(): void;
|
|
245
249
|
} & {
|
|
246
250
|
/**
|
|
247
251
|
* #getter
|
|
@@ -312,12 +316,14 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
312
316
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
313
317
|
} & {
|
|
314
318
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
319
|
+
} & {
|
|
320
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
321
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
322
|
+
} & {
|
|
315
323
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
316
324
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
317
325
|
region: import("mobx-state-tree").IModelType<{
|
|
318
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
319
|
-
* #property
|
|
320
|
-
*/
|
|
326
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
321
327
|
start: import("mobx-state-tree").ISimpleType<number>;
|
|
322
328
|
end: import("mobx-state-tree").ISimpleType<number>;
|
|
323
329
|
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
@@ -331,9 +337,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
331
337
|
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
332
338
|
}, {
|
|
333
339
|
renderInProgress: AbortController | undefined;
|
|
334
|
-
filled: boolean;
|
|
335
|
-
* #property
|
|
336
|
-
*/
|
|
340
|
+
filled: boolean;
|
|
337
341
|
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
338
342
|
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
339
343
|
layout: any;
|
|
@@ -350,7 +354,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
350
354
|
afterAttach(): void;
|
|
351
355
|
setStatus(message: string): void;
|
|
352
356
|
setLoading(abortController: AbortController): void;
|
|
353
|
-
setMessage(messageText: string): void;
|
|
357
|
+
setMessage(messageText: string): void; /**
|
|
358
|
+
* #method
|
|
359
|
+
*/
|
|
354
360
|
setRendered(props: {
|
|
355
361
|
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
356
362
|
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
@@ -362,11 +368,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
362
368
|
reload(): void;
|
|
363
369
|
beforeDestroy(): void;
|
|
364
370
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
365
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
366
|
-
/**
|
|
367
|
-
* #getter
|
|
368
|
-
*/
|
|
369
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
370
371
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
371
372
|
maxFeatureScreenDensity: {
|
|
372
373
|
type: string;
|
|
@@ -37,6 +37,7 @@ const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
|
|
|
37
37
|
const SetMaxHeightDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetMaxHeight'))));
|
|
38
38
|
/**
|
|
39
39
|
* #stateModel LinearBasicDisplay
|
|
40
|
+
* #category display
|
|
40
41
|
* used by `FeatureTrack`, has simple settings like "show/hide feature labels",
|
|
41
42
|
* etc.
|
|
42
43
|
*/
|
|
@@ -209,4 +210,3 @@ function stateModelFactory(configSchema) {
|
|
|
209
210
|
});
|
|
210
211
|
}
|
|
211
212
|
exports.default = stateModelFactory;
|
|
212
|
-
//# sourceMappingURL=model.js.map
|
|
@@ -1,7 +1,8 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { LinearGenomeViewModel } from '..';
|
|
2
3
|
type LGV = LinearGenomeViewModel;
|
|
3
4
|
declare function CenterLine({ model }: {
|
|
4
5
|
model: LGV;
|
|
5
|
-
}): JSX.Element | null;
|
|
6
|
+
}): React.JSX.Element | null;
|
|
6
7
|
declare const _default: typeof CenterLine;
|
|
7
8
|
export default _default;
|
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
|
|
2
3
|
import { ContentBlock } from '@jbrowse/core/util/blockTypes';
|
|
3
4
|
import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
|
|
@@ -113,5 +114,5 @@ declare const _default: ({ overview, block, assembly, }: {
|
|
|
113
114
|
}>;
|
|
114
115
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
115
116
|
block: ContentBlock;
|
|
116
|
-
}) => JSX.Element;
|
|
117
|
+
}) => React.JSX.Element;
|
|
117
118
|
export default _default;
|
|
@@ -1,7 +1,8 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { ExportSvgOptions } from '..';
|
|
2
3
|
export default function ExportSvgDlg({ model, handleClose, }: {
|
|
3
4
|
model: {
|
|
4
5
|
exportSvg(opts: ExportSvgOptions): Promise<void>;
|
|
5
6
|
};
|
|
6
7
|
handleClose: () => void;
|
|
7
|
-
}): JSX.Element;
|
|
8
|
+
}): React.JSX.Element;
|
|
@@ -1,8 +1,9 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { LinearGenomeViewModel } from '..';
|
|
2
3
|
type LGV = LinearGenomeViewModel;
|
|
3
4
|
declare function SequenceDialog({ model, handleClose, }: {
|
|
4
5
|
model: LGV;
|
|
5
6
|
handleClose: () => void;
|
|
6
|
-
}): JSX.Element;
|
|
7
|
+
}): React.JSX.Element;
|
|
7
8
|
declare const _default: typeof SequenceDialog;
|
|
8
9
|
export default _default;
|
|
@@ -172,4 +172,3 @@ function SequenceDialog({ model, handleClose, }) {
|
|
|
172
172
|
react_1.default.createElement(material_1.Button, { onClick: handleClose, variant: "contained" }, "Close"))));
|
|
173
173
|
}
|
|
174
174
|
exports.default = (0, mobx_react_1.observer)(SequenceDialog);
|
|
175
|
-
//# sourceMappingURL=GetSequenceDialog.js.map
|
|
@@ -1,7 +1,8 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { LinearGenomeViewModel } from '..';
|
|
2
3
|
type LGV = LinearGenomeViewModel;
|
|
3
4
|
declare function VerticalGuides({ model }: {
|
|
4
5
|
model: LGV;
|
|
5
|
-
}): JSX.Element;
|
|
6
|
+
}): React.JSX.Element;
|
|
6
7
|
declare const _default: typeof VerticalGuides;
|
|
7
8
|
export default _default;
|
|
@@ -1,6 +1,7 @@
|
|
|
1
|
+
import React from 'react';
|
|
1
2
|
import { LinearGenomeViewModel } from '..';
|
|
2
3
|
type LGV = LinearGenomeViewModel;
|
|
3
4
|
declare const LinearGenomeViewHeader: ({ model }: {
|
|
4
5
|
model: LGV;
|
|
5
|
-
}) => JSX.Element | null;
|
|
6
|
+
}) => React.JSX.Element | null;
|
|
6
7
|
export default LinearGenomeViewHeader;
|