npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.4.0 → 2.4.1 - Mend

@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (150) hide show

package/esm/LinearBareDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBareDisplay/model.d.ts CHANGED Viewed

@@ -128,7 +128,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -158,7 +158,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;

package/esm/LinearBasicDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import configSchema from './configSchema';
-import modelFactory from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { modelFactory, configSchema };
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';

package/esm/LinearBasicDisplay/index.js CHANGED Viewed

@@ -17,5 +17,6 @@ export default (pluginManager) => {
         });
     });
 };
-export { modelFactory, configSchema };
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';
 //# sourceMappingURL=index.js.map

package/esm/LinearBasicDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -56,6 +56,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
+            /**
+             * #method
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -64,7 +67,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; /**
+     * #action
+     */
 } & {
     /**
      * #property
@@ -158,7 +163,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -188,7 +193,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -336,6 +341,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
+            /**
+             * #method
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -344,7 +352,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; /**
+     * #action
+     */
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
     id: string;

package/esm/LinearGenomeView/components/ExportSvgDialog.js CHANGED Viewed

@@ -31,7 +31,7 @@ export default function ExportSvgDlg({ model, handleClose, }) {
                 React.createElement(MenuItem, { value: "none" }, "None")),
             React.createElement("br", null),
             session.allThemes ? (React.createElement(TextField, { select: true, label: "Theme", variant: "outlined", value: themeName, onChange: event => setThemeName(event.target.value) }, Object.entries(session.allThemes()).map(([key, val]) => (React.createElement(MenuItem, { key: key, value: key },
-            // @ts-ignore
+            // @ts-expect-error
             val.name || '(Unknown name)'))))) : null,
             offscreenCanvas ? (React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: rasterizeLayers, onChange: () => setRasterizeLayers(val => !val) }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : (React.createElement(Typography, null, "Note: rasterizing layers not yet supported in this browser, so SVG size may be large"))),
         React.createElement(DialogActions, null,

package/esm/LinearGenomeView/components/ExportSvgDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/ImportForm.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare const ImportForm: ({ model }: {
+declare const _default: ({ model }: {
     model: LGV;
 }) => JSX.Element;
-export default ImportForm;
+export default _default;

package/esm/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -2,13 +2,14 @@ import React, { useState, useEffect, lazy } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
-import { Button, CircularProgress, FormControl, Container, Grid, } from '@mui/material';
+import { Button, FormControl, Container, Grid, CircularProgress, } from '@mui/material';
 import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui';
 // icons
 import CloseIcon from '@mui/icons-material/Close';
 // locals
 import RefNameAutocomplete from './RefNameAutocomplete';
 import { fetchResults, splitLast } from './util';
+// lazies
 const SearchResultsDialog = lazy(() => import('./SearchResultsDialog'));
 const useStyles = makeStyles()(theme => ({
     importFormContainer: {
@@ -21,7 +22,7 @@ const useStyles = makeStyles()(theme => ({
         padding: theme.spacing(4),
     },
 }));
-const ImportForm = observer(({ model }) => {
+export default observer(function ({ model }) {
     var _a;
     const { classes } = useStyles();
     const session = getSession(model);
@@ -34,14 +35,16 @@ const ImportForm = observer(({ model }) => {
     const assemblyError = assemblyNames.length
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
-    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const displayError = assemblyError || error;
     const [value, setValue] = useState('');
-    const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
-    // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change. needs to react to selectedAsm as well as r0 because changing
-    // assembly will run setValue('') and then r0 may not change if assembly names are the
-    // same across assemblies, but it still needs to be reset
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const assemblyLoaded = !!regions;
+    const r0 = regions ? (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName : '';
+    // useEffect resets to an "initial state" of displaying first region from
+    // assembly after assembly change. needs to react to selectedAsm as well as
+    // r0 because changing assembly will run setValue('') and then r0 may not
+    // change if assembly names are the same across assemblies, but it still
+    // needs to be reset
     useEffect(() => {
         setValue(r0);
     }, [r0, selectedAsm]);
@@ -73,7 +76,7 @@ const ImportForm = observer(({ model }) => {
                 const [ref, rest] = splitLast(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
-                    (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
+                    (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10)))) {
                     await model.navToLocString(input, selectedAsm);
                 }
                 else {
@@ -118,24 +121,18 @@ const ImportForm = observer(({ model }) => {
                 React.createElement(Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     React.createElement(Grid, { item: true },
                         React.createElement(FormControl, null,
-                            React.createElement(AssemblySelector, { onChange: val => {
-                                    setSelectedAsm(val);
-                                    setValue('');
-                                }, localStorageKey: "lgv", session: session, selected: selectedAsm }))),
-                    React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
+                            React.createElement(AssemblySelector, { onChange: val => setSelectedAsm(val), localStorageKey: "lgv", session: session, selected: selectedAsm }))),
+                    React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : assemblyLoaded ? (React.createElement(FormControl, null,
                         React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
                                 queryString,
                                 assembly,
                                 textSearchManager,
                                 rankSearchResults,
                                 searchScope,
-                            }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
-                            // note: minWidth 270 accommodates full width of helperText
-                            minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
+                            }), model: model, assemblyName: selectedAsm, value: value, minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
                                 variant: 'outlined',
                                 helperText: 'Enter sequence name, feature name, or location',
-                                style: { minWidth: '175px' },
-                            } }))) : (React.createElement(CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
+                            } }))) : (React.createElement(CircularProgress, { size: 20, disableShrink: true }))) : null),
                     React.createElement(Grid, { item: true },
                         React.createElement(FormControl, null,
                             React.createElement(Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open")),
@@ -146,5 +143,4 @@ const ImportForm = observer(({ model }) => {
                                 }, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
         isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
 });
-export default ImportForm;
 //# sourceMappingURL=ImportForm.js.map

package/esm/LinearGenomeView/components/ImportForm.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/OverviewRubberband.d.ts CHANGED Viewed

@@ -2,10 +2,9 @@ import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function OverviewRubberband({ model, overview, ControlComponent, }: {
+declare const _default: ({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;
-    ControlComponent?: React.ReactElement;
-}): JSX.Element;
-declare const _default: typeof OverviewRubberband;
+    ControlComponent?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+}) => JSX.Element;
 export default _default;

package/esm/LinearGenomeView/components/OverviewRubberband.js CHANGED Viewed

@@ -19,7 +19,7 @@ const useStyles = makeStyles()({
         zIndex: 10,
     },
 });
-const HoverTooltip = observer(({ model, open, guideX, overview, }) => {
+const HoverTooltip = observer(function ({ model, open, guideX, overview, }) {
     var _a;
     const { classes } = useStyles();
     const { cytobandOffset } = model;
@@ -30,11 +30,9 @@ const HoverTooltip = observer(({ model, open, guideX, overview, }) => {
         px.coord < f.get('end') &&
         px.refName === assembly.getCanonicalRefName(f.get('refName')));
     return (React.createElement(Tooltip, { open: open, placement: "top", title: [stringify(px), cytoband === null || cytoband === void 0 ? void 0 : cytoband.get('name')].join(' '), arrow: true },
-        React.createElement("div", { className: classes.guide, style: {
-                left: guideX,
-            } })));
+        React.createElement("div", { className: classes.guide, style: { left: guideX } })));
 });
-function OverviewRubberband({ model, overview, ControlComponent = React.createElement("div", null), }) {
+export default observer(function OverviewRubberband({ model, overview, ControlComponent = React.createElement("div", null), }) {
     const { cytobandOffset } = model;
     const [startX, setStartX] = useState();
     const [currentX, setCurrentX] = useState();
@@ -107,7 +105,7 @@ function OverviewRubberband({ model, overview, ControlComponent = React.createEl
     if (startX === undefined) {
         return (React.createElement("div", { style: { position: 'relative' } },
             guideX !== undefined ? (React.createElement(HoverTooltip, { model: model, open: !mouseDragging, overview: overview, guideX: guideX })) : null,
-            React.createElement("div", { className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+            React.createElement("div", { className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
     }
     let left = startX || 0;
     let width = 0;
@@ -121,14 +119,13 @@ function OverviewRubberband({ model, overview, ControlComponent = React.createEl
     if (startX) {
         leftBpOffset = overview.pxToBp(startX - cytobandOffset);
         rightBpOffset = overview.pxToBp(startX + width - cytobandOffset);
-        if (currentX && currentX < startX) {
+        if (currentX !== undefined && currentX < startX) {
             ;
             [leftBpOffset, rightBpOffset] = [rightBpOffset, leftBpOffset];
         }
     }
     return (React.createElement("div", { style: { position: 'relative' } },
-        leftBpOffset && rightBpOffset ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: width, left: left })) : null,
-        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
-}
-export default observer(OverviewRubberband);
+        leftBpOffset && rightBpOffset ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: Math.abs(width), left: left })) : null,
+        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+});
 //# sourceMappingURL=OverviewRubberband.js.map

package/esm/LinearGenomeView/components/OverviewRubberband.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/OverviewScalebar.d.ts CHANGED Viewed

@@ -1,17 +1,16 @@
 import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
-import Cytobands from './Cytobands';
 declare const Polygon: ({ model, overview, useOffset, }: {
     model: LGV;
     overview: Base1DViewModel;
     useOffset?: boolean | undefined;
 }) => JSX.Element | null;
 type LGV = LinearGenomeViewModel;
-declare function OverviewScalebar({ model, children, }: {
+declare const _default: ({ model, children, }: {
     model: LGV;
     children: React.ReactNode;
-}): JSX.Element;
-declare const _default: typeof OverviewScalebar;
+}) => JSX.Element;
 export default _default;
-export { Cytobands, Polygon };
+export { Polygon };
+export { default as Cytobands } from './Cytobands';

package/esm/LinearGenomeView/components/OverviewScalebar.js CHANGED Viewed

@@ -178,7 +178,7 @@ const Scalebar = observer(function ({ model, scale, overview, }) {
                 } })) : (React.createElement(OverviewBox, { scale: scale, block: block, model: model, overview: overview, key: `${JSON.stringify(block)}-${idx}` }));
         })));
 });
-function OverviewScalebar({ model, children, }) {
+export default observer(function OverviewScalebar({ model, children, }) {
     const { classes } = useStyles();
     const { totalBp, width, cytobandOffset, displayedRegions } = model;
     const overview = Base1DView.create({
@@ -196,7 +196,7 @@ function OverviewScalebar({ model, children, }) {
             React.createElement("svg", { height: HEADER_BAR_HEIGHT, className: classes.overviewSvg },
                 React.createElement(Polygon, { model: model, overview: overview })),
             children)));
-}
-export default observer(OverviewScalebar);
-export { Cytobands, Polygon };
+});
+export { Polygon };
+export { default as Cytobands } from './Cytobands';
 //# sourceMappingURL=OverviewScalebar.js.map

package/esm/LinearGenomeView/components/OverviewScalebar.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts CHANGED Viewed

@@ -6,7 +6,7 @@ export interface Option {
     group?: string;
     result: BaseResult;
 }
-declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, TextFieldProps, }: {
+declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp, minWidth, maxWidth, TextFieldProps, }: {
     model: LinearGenomeViewModel;
     onSelect?: (region: BaseResult) => void;
     onChange?: (val: string) => void;
@@ -15,6 +15,7 @@ declare function RefNameAutocomplete({ model, onSelect, assemblyName, style, fet
     fetchResults: (query: string) => Promise<BaseResult[]>;
     style?: React.CSSProperties;
     minWidth?: number;
+    maxWidth?: number;
     showHelp?: boolean;
     TextFieldProps?: TFP;
 }): JSX.Element;

package/esm/LinearGenomeView/components/RefNameAutocomplete.js CHANGED Viewed

@@ -2,12 +2,38 @@ import React, { Suspense, lazy, useMemo, useEffect, useState } from 'react';
 import { observer } from 'mobx-react';
 import { getSession, useDebounce, measureText } from '@jbrowse/core/util';
 import BaseResult, { RefSequenceResult, } from '@jbrowse/core/TextSearch/BaseResults';
-import { Autocomplete, CircularProgress, IconButton, InputAdornment, TextField, } from '@mui/material';
+import { Autocomplete, IconButton, InputAdornment, TextField, } from '@mui/material';
 // icons
 import SearchIcon from '@mui/icons-material/Search';
 import HelpIcon from '@mui/icons-material/Help';
 // lazy
 const HelpDialog = lazy(() => import('./HelpDialog'));
+function aggregateResults(results) {
+    const m = {};
+    for (let i = 0; i < results.length; i++) {
+        const r = results[i];
+        const d = r.getDisplayString();
+        if (!m[d]) {
+            m[d] = [];
+        }
+        m[d].push(r);
+    }
+    return m;
+}
+function getDeduplicatedResult(results) {
+    return Object.entries(aggregateResults(results)).map(([displayString, results]) => results.length === 1
+        ? {
+            result: results[0],
+        }
+        : {
+            // deduplicate a "multi-result"
+            result: new BaseResult({
+                displayString,
+                results,
+                label: displayString,
+            }),
+        });
+}
 // the logic of this method is to only apply a filter to RefSequenceResults
 // because they do not have a matchedObject. the trix search results already
 // filter so don't need re-filtering
@@ -18,7 +44,7 @@ function filterOptions(options, searchQuery) {
             result.matchedObject);
     });
 }
-function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, TextFieldProps = {}, }) {
+function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
     const session = getSession(model);
     const { assemblyManager } = session;
     const [open, setOpen] = useState(false);
@@ -49,31 +75,8 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
                 setLoaded(false);
                 const results = await fetchResults(debouncedSearch);
                 if (active) {
-                    const m = {};
-                    for (let i = 0; i < results.length; i++) {
-                        const r = results[i];
-                        const d = r.getDisplayString();
-                        if (!m[d]) {
-                            m[d] = [];
-                        }
-                        m[d].push(r);
-                    }
-                    const display = Object.entries(m).map(([displayString, results]) => {
-                        if (results.length === 1) {
-                            return { result: results[0] };
-                        }
-                        else {
-                            return {
-                                result: new BaseResult({
-                                    displayString,
-                                    results,
-                                    label: displayString,
-                                }),
-                            };
-                        }
-                    });
-                    setSearchOptions(display);
                     setLoaded(true);
+                    setSearchOptions(getDeduplicatedResult(results));
                 }
             }
             catch (e) {
@@ -88,13 +91,14 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
         };
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
-    // heuristic, text width + icon width
-    // + 45 accommodates help icon and search icon
-    const width = Math.min(Math.max(measureText(inputBoxVal, 16) + 50, minWidth), 550);
+    // heuristic, text width + icon width + 50 accommodates help icon and search
+    // icon
+    const w = measureText(inputBoxVal, 16) + 50;
+    const width = Math.min(Math.max(w, minWidth), maxWidth);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (React.createElement(React.Fragment, null,
-        React.createElement(Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
+        React.createElement(Autocomplete, { "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
                 setInputValue(newInputValue);
                 onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
             }, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
@@ -140,10 +144,10 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
                         ...params.InputProps,
                         ...InputProps,
                         endAdornment: (React.createElement(React.Fragment, null,
-                            regions.length === 0 ? (React.createElement(CircularProgress, { color: "inherit", size: 20 })) : (React.createElement(InputAdornment, { position: "end", style: { marginRight: 7 } },
+                            React.createElement(InputAdornment, { position: "end", style: { marginRight: 7 } },
                                 React.createElement(SearchIcon, { fontSize: "small" }),
                                 showHelp ? (React.createElement(IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
-                                    React.createElement(HelpIcon, { fontSize: "small" }))) : null)),
+                                    React.createElement(HelpIcon, { fontSize: "small" }))) : null),
                             params.InputProps.endAdornment)),
                     }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
             }, getOptionLabel: option => (typeof option === 'string'