npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.4.0 → 2.4.1 - Mend

@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (150) hide show

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts CHANGED Viewed

@@ -1,10 +1,9 @@
 import React from 'react';
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
 }) => JSX.Element;
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js CHANGED Viewed

@@ -34,10 +34,6 @@ const mui_1 = require("tss-react/mui");
 const configuration_1 = require("@jbrowse/core/configuration");
 const ui_1 = require("@jbrowse/core/ui");
 // locals
-const Tooltip_1 = __importDefault(require("./Tooltip"));
-exports.Tooltip = Tooltip_1.default;
-const BlockMsg_1 = __importDefault(require("./BlockMsg"));
-exports.BlockMsg = BlockMsg_1.default;
 const LinearBlocks_1 = __importDefault(require("./LinearBlocks"));
 const useStyles = (0, mui_1.makeStyles)()({
     display: {
@@ -96,4 +92,8 @@ const BaseLinearDisplay = (0, mobx_react_1.observer)(function (props) {
                 : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems() })));
 });
 exports.default = BaseLinearDisplay;
+var Tooltip_1 = require("./Tooltip");
+Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
+var BlockMsg_1 = require("./BlockMsg");
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return __importDefault(BlockMsg_1).default; } });
 //# sourceMappingURL=BaseLinearDisplay.js.map

package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts CHANGED Viewed

@@ -117,12 +117,12 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown; /**
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
              * #property
              */
+        }, {
+            rendererTypeName: string;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -136,6 +136,11 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
+    /**
+     * #getter
+     * returns a string feature ID if the globally-selected object
+     * is probably a feature
+     */
     reload(): void;
 } & {
     currBpPerPx: number;
@@ -146,7 +151,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     estimatedRegionStatsP: Promise<Stats> | undefined;
     estimatedRegionStats: Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     /**
      * #getter
      */
@@ -250,7 +255,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     /**
      * #action
      */

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js CHANGED Viewed

@@ -49,10 +49,10 @@ function getId(id, index) {
 function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;
@@ -330,12 +330,8 @@ function stateModelFactory() {
          * #action
          */
         setHeight(displayHeight) {
-            if (displayHeight > minDisplayHeight) {
-                self.heightPreConfig = displayHeight;
-            }
-            else {
-                self.heightPreConfig = minDisplayHeight;
-            }
+            self.heightPreConfig =
+                displayHeight > minDisplayHeight ? displayHeight : minDisplayHeight;
             return self.height;
         },
         /**
@@ -691,7 +687,7 @@ function stateModelFactory() {
         }
         // rewrite "height" from older snapshots to "heightPreConfig", this allows
         // us to maintain a height "getter" going forward
-        // @ts-ignore
+        // @ts-expect-error
         const { height, ...rest } = snap;
         return { heightPreConfig: height, ...rest };
     })

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js CHANGED Viewed

@@ -54,10 +54,9 @@ const blockState = mobx_state_tree_1.types
             self.status = message;
         },
         setLoading(abortController) {
-            if (renderInProgress !== undefined) {
-                if (!renderInProgress.signal.aborted) {
-                    renderInProgress.abort();
-                }
+            if (renderInProgress !== undefined &&
+                !renderInProgress.signal.aborted) {
+                renderInProgress.abort();
             }
             self.filled = false;
             self.message = undefined;
@@ -161,7 +160,7 @@ function renderBlockData(self, optDisplay) {
         const assemblyNames = (0, tracks_1.getTrackAssemblyNames)(parentTrack);
         const regionAsm = self.region.assemblyName;
         if (!assemblyNames.includes(regionAsm) &&
-            !assemblyNames.find(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
+            !assemblyNames.some(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
             throw new Error(`region assembly (${regionAsm}) does not match track assemblies (${assemblyNames})`);
         }
         const renderProps = display.renderProps();

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/BaseLinearDisplay/models/util.js CHANGED Viewed

@@ -4,10 +4,10 @@ exports.getDisplayStr = void 0;
 function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;

package/dist/BaseLinearDisplay/models/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":";;;AAaA,SAAgB,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;~~KACtE~~;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;~~KACnE~~;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AAVD,sCAUC"}
1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":";;;AAaA,SAAgB,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC7E;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC1E;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AAVD,sCAUC"}

package/dist/LaunchLinearGenomeView/index.js CHANGED Viewed

@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const util_1 = require("@jbrowse/core/util");
 exports.default = (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView',
-    // @ts-ignore
+    // @ts-expect-error
     async ({ session, assembly, loc, tracks = [], }) => {
         try {
             const { assemblyManager } = session;

package/dist/LaunchLinearGenomeView/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearBareDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import { configSchemaFactory } from './configSchema';
-import { stateModelFactory } from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';

package/dist/LinearBareDisplay/index.js CHANGED Viewed

@@ -4,9 +4,7 @@ exports.stateModelFactory = exports.configSchemaFactory = void 0;
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 // locals
 const configSchema_1 = require("./configSchema");
-Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return configSchema_1.configSchemaFactory; } });
 const model_1 = require("./model");
-Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return model_1.stateModelFactory; } });
 const BaseLinearDisplay_1 = require("../BaseLinearDisplay/");
 exports.default = (pluginManager) => {
     pluginManager.addDisplayType(() => {
@@ -21,4 +19,8 @@ exports.default = (pluginManager) => {
         });
     });
 };
+var configSchema_2 = require("./configSchema");
+Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return configSchema_2.configSchemaFactory; } });
+var model_2 = require("./model");
+Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return model_2.stateModelFactory; } });
 //# sourceMappingURL=index.js.map

package/dist/LinearBareDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBareDisplay/index.ts"],"names":[],"mappings":";;;AACA,+EAAiE;AAEjE,SAAS;AACT,iDAAoD;AACpD,mCAA2C;AAC3C,6DAAkE;AAElE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,kCAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,mCAAW,CAAC;YACrB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,IAAA,yBAAiB,EAAC,YAAY,CAAC;YAC3C,SAAS,EAAE,YAAY;YACvB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,8CAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,+CAAoD;AAA3C,mHAAA,mBAAmB,OAAA;AAC5B,iCAA2C;AAAlC,0GAAA,iBAAiB,OAAA"}

package/dist/LinearBareDisplay/model.d.ts CHANGED Viewed

@@ -128,7 +128,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -158,7 +158,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;

package/dist/LinearBasicDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import configSchema from './configSchema';
-import modelFactory from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { modelFactory, configSchema };
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';

package/dist/LinearBasicDisplay/index.js CHANGED Viewed

@@ -8,9 +8,7 @@ const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
 // locals
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.configSchema = configSchema_1.default;
 const model_1 = __importDefault(require("./model"));
-exports.modelFactory = model_1.default;
 exports.default = (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const config = (0, configSchema_1.default)(pluginManager);
@@ -25,4 +23,8 @@ exports.default = (pluginManager) => {
         });
     });
 };
+var model_2 = require("./model");
+Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
+var configSchema_2 = require("./configSchema");
+Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });
 //# sourceMappingURL=index.js.map

package/dist/LinearBasicDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearBasicDisplay/index.ts"],"names":[],"mappings":";;;;;;AACA,+EAAiE;AACjE,4DAAiE;AAEjE,SAAS;AACT,kEAAyC;AACzC,oDAAkC;AAElC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,MAAM,GAAG,IAAA,sBAAY,EAAC,aAAa,CAAC,CAAA;QAC1C,OAAO,IAAI,mCAAW,CAAC;YACrB,IAAI,EAAE,oBAAoB;YAC1B,WAAW,EAAE,uBAAuB;YACpC,YAAY,EAAE,MAAM;YACpB,UAAU,EAAE,IAAA,eAAY,EAAC,MAAM,CAAC;YAChC,SAAS,EAAE,cAAc;YACzB,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,8CAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA;AAED,iCAAiD;AAAxC,sHAAA,OAAO,OAAgB;AAChC,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}

package/dist/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -56,6 +56,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
+            /**
+             * #method
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -64,7 +67,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; /**
+     * #action
+     */
 } & {
     /**
      * #property
@@ -158,7 +163,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -188,7 +193,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -336,6 +341,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
+            /**
+             * #method
+             */
             maxHeightReached: boolean;
             renderProps: any;
         } | undefined): void;
@@ -344,7 +352,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         beforeDestroy(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; /**
+     * #action
+     */
 }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
     id: string;

package/dist/LinearGenomeView/components/ExportSvgDialog.js CHANGED Viewed

@@ -56,7 +56,7 @@ function ExportSvgDlg({ model, handleClose, }) {
                 react_1.default.createElement(material_1.MenuItem, { value: "none" }, "None")),
             react_1.default.createElement("br", null),
             session.allThemes ? (react_1.default.createElement(material_1.TextField, { select: true, label: "Theme", variant: "outlined", value: themeName, onChange: event => setThemeName(event.target.value) }, Object.entries(session.allThemes()).map(([key, val]) => (react_1.default.createElement(material_1.MenuItem, { key: key, value: key },
-            // @ts-ignore
+            // @ts-expect-error
             val.name || '(Unknown name)'))))) : null,
             offscreenCanvas ? (react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: rasterizeLayers, onChange: () => setRasterizeLayers(val => !val) }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : (react_1.default.createElement(material_1.Typography, null, "Note: rasterizing layers not yet supported in this browser, so SVG size may be large"))),
         react_1.default.createElement(material_1.DialogActions, null,

package/dist/LinearGenomeView/components/ExportSvgDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/ImportForm.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare const ImportForm: ({ model }: {
+declare const _default: ({ model }: {
     model: LGV;
 }) => JSX.Element;
-export default ImportForm;
+export default _default;

package/dist/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -37,6 +37,7 @@ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
 const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
 const util_2 = require("./util");
+// lazies
 const SearchResultsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SearchResultsDialog'))));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
@@ -49,7 +50,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         padding: theme.spacing(4),
     },
 }));
-const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
+exports.default = (0, mobx_react_1.observer)(function ({ model }) {
     var _a;
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
@@ -62,14 +63,16 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     const assemblyError = assemblyNames.length
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
-    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const displayError = assemblyError || error;
     const [value, setValue] = (0, react_1.useState)('');
-    const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
-    // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change. needs to react to selectedAsm as well as r0 because changing
-    // assembly will run setValue('') and then r0 may not change if assembly names are the
-    // same across assemblies, but it still needs to be reset
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const assemblyLoaded = !!regions;
+    const r0 = regions ? (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName : '';
+    // useEffect resets to an "initial state" of displaying first region from
+    // assembly after assembly change. needs to react to selectedAsm as well as
+    // r0 because changing assembly will run setValue('') and then r0 may not
+    // change if assembly names are the same across assemblies, but it still
+    // needs to be reset
     (0, react_1.useEffect)(() => {
         setValue(r0);
     }, [r0, selectedAsm]);
@@ -101,7 +104,7 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                 const [ref, rest] = (0, util_2.splitLast)(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
-                    (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
+                    (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10)))) {
                     await model.navToLocString(input, selectedAsm);
                 }
                 else {
@@ -146,24 +149,18 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                 react_1.default.createElement(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     react_1.default.createElement(material_1.Grid, { item: true },
                         react_1.default.createElement(material_1.FormControl, null,
-                            react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
-                                    setSelectedAsm(val);
-                                    setValue('');
-                                }, localStorageKey: "lgv", session: session, selected: selectedAsm }))),
-                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
+                            react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => setSelectedAsm(val), localStorageKey: "lgv", session: session, selected: selectedAsm }))),
+                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : assemblyLoaded ? (react_1.default.createElement(material_1.FormControl, null,
                         react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
                                 queryString,
                                 assembly,
                                 textSearchManager,
                                 rankSearchResults,
                                 searchScope,
-                            }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
-                            // note: minWidth 270 accommodates full width of helperText
-                            minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
+                            }), model: model, assemblyName: selectedAsm, value: value, minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
                                 variant: 'outlined',
                                 helperText: 'Enter sequence name, feature name, or location',
-                                style: { minWidth: '175px' },
-                            } }))) : (react_1.default.createElement(material_1.CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
+                            } }))) : (react_1.default.createElement(material_1.CircularProgress, { size: 20, disableShrink: true }))) : null),
                     react_1.default.createElement(material_1.Grid, { item: true },
                         react_1.default.createElement(material_1.FormControl, null,
                             react_1.default.createElement(material_1.Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open")),
@@ -174,5 +171,4 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                                 }, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
         isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
 });
-exports.default = ImportForm;
 //# sourceMappingURL=ImportForm.js.map