npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.4.0 → 2.4.1 - Mend

@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (150) hide show

package/dist/index.d.ts CHANGED Viewed

@@ -1,11 +1,6 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
-import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-import { LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
-import { renderToSvg, totalHeight, SVGTracks, SVGRuler } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
-import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
     exports: {
@@ -169,7 +164,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -199,7 +194,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
                 updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -349,7 +344,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -379,7 +374,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
                 updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -593,7 +588,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
             estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
-            readonly height: any;
+            readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
         } & {
@@ -623,7 +618,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
             setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             clearRegionStats(): void;
-            setHeight(displayHeight: number): any;
+            setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
             setScrollTop(scrollTop: number): void;
             updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -797,9 +792,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -826,7 +821,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -989,9 +984,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1018,7 +1013,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1191,9 +1186,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1220,7 +1215,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1383,9 +1378,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1412,7 +1407,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1585,9 +1580,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1614,7 +1609,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1777,9 +1772,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1806,7 +1801,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1908,6 +1903,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, totalHeight, SVGTracks, SVGRuler, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
-export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
-export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
+export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
+export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
+export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
+export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
+export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';

package/dist/index.js CHANGED Viewed

@@ -26,30 +26,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.SVGRuler = exports.SVGTracks = exports.totalHeight = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
+exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.SVGRuler = exports.totalHeight = exports.SVGTracks = exports.renderToSvg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.baseLinearDisplayConfigSchema = exports.BlockMsg = exports.linearBareDisplayConfigSchemaFactory = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const util_1 = require("@jbrowse/core/util");
 // icons
 const LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
 // locals
 const BaseLinearDisplay_1 = require("./BaseLinearDisplay");
-Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplay; } });
-Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_1.BaseLinearDisplayComponent; } });
-Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_1.BlockMsg; } });
-Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_1.baseLinearDisplayConfigSchema; } });
-const LinearBareDisplay_1 = __importStar(require("./LinearBareDisplay"));
-Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
+const LinearBareDisplay_1 = __importDefault(require("./LinearBareDisplay"));
 const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
-Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
-Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
-const SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
-Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
-Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
-Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
-Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
-const LinearBasicDisplay_1 = __importStar(require("./LinearBasicDisplay"));
-Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
-Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
+const LinearBasicDisplay_1 = __importDefault(require("./LinearBasicDisplay"));
 const FeatureTrack_1 = __importDefault(require("./FeatureTrack"));
 const BasicTrack_1 = __importDefault(require("./BasicTrack"));
 const LaunchLinearGenomeView_1 = __importDefault(require("./LaunchLinearGenomeView"));
@@ -87,4 +73,22 @@ class LinearGenomeViewPlugin extends Plugin_1.default {
     }
 }
 exports.default = LinearGenomeViewPlugin;
+var LinearBareDisplay_2 = require("./LinearBareDisplay");
+Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.configSchemaFactory; } });
+var BaseLinearDisplay_2 = require("./BaseLinearDisplay");
+Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
+Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_2.baseLinearDisplayConfigSchema; } });
+Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
+Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplay; } });
+var LinearGenomeView_2 = require("./LinearGenomeView");
+Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_2.RefNameAutocomplete; } });
+Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_2.SearchBox; } });
+var SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
+Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
+Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
+Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
+Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
+var LinearBasicDisplay_2 = require("./LinearBasicDisplay");
+Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.configSchema; } });
+Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.modelFactory; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map CHANGED Viewed

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package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts CHANGED Viewed

@@ -1,10 +1,9 @@
 import React from 'react';
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
 declare const BaseLinearDisplay: (props: {
     model: BaseLinearDisplayModel;
     children?: React.ReactNode;
 }) => JSX.Element;
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js CHANGED Viewed

@@ -5,8 +5,6 @@ import { makeStyles } from 'tss-react/mui';
 import { getConf } from '@jbrowse/core/configuration';
 import { Menu } from '@jbrowse/core/ui';
 // locals
-import Tooltip from './Tooltip';
-import BlockMsg from './BlockMsg';
 import LinearBlocks from './LinearBlocks';
 const useStyles = makeStyles()({
     display: {
@@ -65,5 +63,6 @@ const BaseLinearDisplay = observer(function (props) {
                 : undefined, style: { zIndex: theme.zIndex.tooltip }, menuItems: contextMenuItems() })));
 });
 export default BaseLinearDisplay;
-export { Tooltip, BlockMsg };
+export { default as Tooltip } from './Tooltip';
+export { default as BlockMsg } from './BlockMsg';
 //# sourceMappingURL=BaseLinearDisplay.js.map

package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts CHANGED Viewed

@@ -117,12 +117,12 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown; /**
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
              * #property
              */
+        }, {
+            rendererTypeName: string;
+            error: unknown;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
@@ -136,6 +136,11 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
+    /**
+     * #getter
+     * returns a string feature ID if the globally-selected object
+     * is probably a feature
+     */
     reload(): void;
 } & {
     currBpPerPx: number;
@@ -146,7 +151,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     estimatedRegionStatsP: Promise<Stats> | undefined;
     estimatedRegionStats: Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     /**
      * #getter
      */
@@ -250,7 +255,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    setHeight(displayHeight: number): any;
+    setHeight(displayHeight: number): number;
     /**
      * #action
      */

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js CHANGED Viewed

@@ -20,10 +20,10 @@ function getId(id, index) {
 function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;
@@ -301,12 +301,8 @@ function stateModelFactory() {
          * #action
          */
         setHeight(displayHeight) {
-            if (displayHeight > minDisplayHeight) {
-                self.heightPreConfig = displayHeight;
-            }
-            else {
-                self.heightPreConfig = minDisplayHeight;
-            }
+            self.heightPreConfig =
+                displayHeight > minDisplayHeight ? displayHeight : minDisplayHeight;
             return self.height;
         },
         /**
@@ -662,7 +658,7 @@ function stateModelFactory() {
         }
         // rewrite "height" from older snapshots to "heightPreConfig", this allows
         // us to maintain a height "getter" going forward
-        // @ts-ignore
+        // @ts-expect-error
         const { height, ...rest } = snap;
         return { heightPreConfig: height, ...rest };
     })

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js CHANGED Viewed

@@ -48,10 +48,9 @@ const blockState = types
             self.status = message;
         },
         setLoading(abortController) {
-            if (renderInProgress !== undefined) {
-                if (!renderInProgress.signal.aborted) {
-                    renderInProgress.abort();
-                }
+            if (renderInProgress !== undefined &&
+                !renderInProgress.signal.aborted) {
+                renderInProgress.abort();
             }
             self.filled = false;
             self.message = undefined;
@@ -155,7 +154,7 @@ export function renderBlockData(self, optDisplay) {
         const assemblyNames = getTrackAssemblyNames(parentTrack);
         const regionAsm = self.region.assemblyName;
         if (!assemblyNames.includes(regionAsm) &&
-            !assemblyNames.find(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
+            !assemblyNames.some(name => { var _a; return (_a = assemblyManager.get(name)) === null || _a === void 0 ? void 0 : _a.hasName(regionAsm); })) {
             throw new Error(`region assembly (${regionAsm}) does not match track assemblies (${assemblyNames})`);
         }
         const renderProps = display.renderProps();

package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/esm/BaseLinearDisplay/models/util.js CHANGED Viewed

@@ -1,10 +1,10 @@
 export function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;

package/esm/BaseLinearDisplay/models/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":"AAaA,MAAM,UAAU,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;~~KACtE~~;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;~~KACnE~~;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC"}
1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/util.ts"],"names":[],"mappings":"AAaA,MAAM,UAAU,aAAa,CAAC,UAAkB;IAC9C,IAAI,SAAS,CAAA;IACb,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE;QACxC,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC7E;SAAM,IAAI,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE;QAC5C,SAAS,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,UAAU,GAAG,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;KAC1E;SAAM;QACL,SAAS,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,QAAQ,CAAA;KAC9C;IACD,OAAO,SAAS,CAAA;AAClB,CAAC"}

package/esm/LaunchLinearGenomeView/index.js CHANGED Viewed

@@ -1,7 +1,7 @@
 import { when } from '@jbrowse/core/util';
 export default (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView',
-    // @ts-ignore
+    // @ts-expect-error
     async ({ session, assembly, loc, tracks = [], }) => {
         try {
             const { assemblyManager } = session;

package/esm/LaunchLinearGenomeView/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBareDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import { configSchemaFactory } from './configSchema';
-import { stateModelFactory } from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';

package/esm/LinearBareDisplay/index.js CHANGED Viewed

@@ -16,5 +16,6 @@ export default (pluginManager) => {
         });
     });
 };
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';
 //# sourceMappingURL=index.js.map