@jbrowse/plugin-linear-genome-view 2.3.3 → 2.4.0

package/dist/LinearGenomeView/components/MiniControls.js

@@ -29,21 +29,22 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
+const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
+// icons
 const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
 const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
 const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
-const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
 const MiniControls = (0, mobx_react_1.observer)((props) => {
     const { model } = props;
     const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor, hideHeader } = model;
     const [anchorEl, setAnchorEl] = (0, react_1.useState)();
     return hideHeader ? (react_1.default.createElement("div", { style: { position: 'absolute', right: '0px', zIndex: '1001' } },
         react_1.default.createElement(material_1.Paper, { style: { background: '#aaa7' } },
-            react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: event => setAnchorEl(event.currentTarget) },
+            react_1.default.createElement(material_1.IconButton, { onClick: event => setAnchorEl(event.currentTarget) },
                 react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
-            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary" },
+            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1 },
                 react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
-            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary" },
+            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1 },
                 react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })),
             react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
                     callback();

package/dist/LinearGenomeView/components/MiniControls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MiniControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/MiniControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,4CAAiD;AACjD,iEAAwC;AAExC,QAAQ;AACR,wEAA+C;AAC/C,0EAAiD;AACjD,8FAA6D;AAK7D,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAuC,EAAE,EAAE;IACxE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC1E,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,GAAe,CAAA;IAEvD,OAAO,UAAU,CAAC,CAAC,CAAC,CAClB,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE;QAChE,8BAAC,gBAAK,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,OAAO,EAAE;YACnC,8BAAC,qBAAU,IAAC,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC;gBAC5D,8BAAC,2BAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;YAEb,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;gBAE7D,8BAAC,iBAAO,IAAC,QAAQ,EAAC,OAAO,GAAG,CACjB;YACb,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC;gBAE7D,8BAAC,gBAAM,IAAC,QAAQ,EAAC,OAAO,GAAG,CAChB;YACb,8BAAC,cAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,OAAO,CAAC,QAAQ,CAAC,EACvB,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;oBAC/B,QAAQ,EAAE,CAAA;oBACV,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,EACD,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,SAAS,CAAC,EACrC,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,GAC5B,CACI,CACJ,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,kBAAe,YAAY,CAAA"}

package/dist/LinearGenomeView/components/OverviewScalebar.d.ts

@@ -1,127 +1,13 @@
 import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import { ContentBlock } from '@jbrowse/core/util/blockTypes';
-import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
 import { LinearGenomeViewModel } from '..';
+import Cytobands from './Cytobands';
 declare const Polygon: ({ model, overview, useOffset, }: {
     model: LGV;
     overview: Base1DViewModel;
     useOffset?: boolean | undefined;
 }) => JSX.Element | null;
 type LGV = LinearGenomeViewModel;
-declare const Cytobands: ({ overview, block, assembly, }: {
-    overview: Base1DViewModel;
-    assembly?: ({
-        configuration: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        error: unknown;
-        loaded: boolean;
-        loadingP: Promise<void> | undefined;
-        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [x: string]: string;
-        } | undefined;
-        lowerCaseRefNameAliases: {
-            [x: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        readonly aliases: string[];
-        readonly displayName: string | undefined;
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly allRefNames: string[] | undefined;
-        readonly lowerCaseRefNames: string[] | undefined;
-        readonly allRefNamesWithLowerCase: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        readonly refNames: string[] | undefined;
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-        setError(e: unknown): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(aliases: {
-            [x: string]: string;
-        }, lcAliases: {
-            [x: string]: string;
-        }): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        setLoadingP(p?: Promise<void> | undefined): void;
-        load(): Promise<void>;
-        loadPre(): Promise<void>;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [x: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [x: string]: string;
-        }>;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    }, {
-        error: unknown;
-        loaded: boolean;
-        loadingP: Promise<void> | undefined;
-        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [x: string]: string;
-        } | undefined;
-        lowerCaseRefNameAliases: {
-            [x: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        readonly aliases: string[];
-        readonly displayName: string | undefined;
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly allRefNames: string[] | undefined;
-        readonly lowerCaseRefNames: string[] | undefined;
-        readonly allRefNamesWithLowerCase: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        readonly refNames: string[] | undefined;
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-        setError(e: unknown): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(aliases: {
-            [x: string]: string;
-        }, lcAliases: {
-            [x: string]: string;
-        }): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        setLoadingP(p?: Promise<void> | undefined): void;
-        load(): Promise<void>;
-        loadPre(): Promise<void>;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [x: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [x: string]: string;
-        }>;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
-    block: ContentBlock;
-}) => JSX.Element;
 declare function OverviewScalebar({ model, children, }: {
     model: LGV;
     children: React.ReactNode;

package/dist/LinearGenomeView/components/OverviewScalebar.js

@@ -16,6 +16,9 @@ const blockTypes_1 = require("@jbrowse/core/util/blockTypes");
 const __1 = require("..");
 const util_2 = require("../util");
 const OverviewRubberband_1 = __importDefault(require("./OverviewRubberband"));
+const Cytobands_1 = __importDefault(require("./Cytobands"));
+exports.Cytobands = Cytobands_1.default;
+const util_3 = require("./util");
 const wholeSeqSpacer = 2;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     scalebar: {
@@ -29,13 +32,14 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         position: 'absolute',
         top: 0,
         height: __1.HEADER_OVERVIEW_HEIGHT,
+        overflow: 'hidden',
     },
     scalebarContigForward: {
-        backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M-.1 0L6 4.5L-.1 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
+        backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M-.1 0L6 4.5L-.1 9' fill='none' stroke='${theme.palette.divider}'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
     scalebarContigReverse: {
-        backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M6 0L0 4.5L6 9' fill='none' stroke='%23ddd'/%3E%3C/svg%3E")`,
+        backgroundImage: `url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 15 9'%3E%3Cpath d='M6 0L0 4.5L6 9' fill='none' stroke='${theme.palette.divider}'/%3E%3C/svg%3E")`,
         backgroundRepeat: 'repeat',
     },
     scalebarRefName: {
@@ -67,7 +71,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         position: 'absolute',
     },
 }));
-const Polygon = (0, mobx_react_1.observer)(({ model, overview, useOffset = true, }) => {
+const Polygon = (0, mobx_react_1.observer)(function ({ model, overview, useOffset = true, }) {
     const theme = (0, material_1.useTheme)();
     const multiplier = Number(useOffset);
     const { interRegionPaddingWidth, offsetPx, dynamicBlocks, cytobandOffset } = model;
@@ -102,99 +106,9 @@ const Polygon = (0, mobx_react_1.observer)(({ model, overview, useOffset = true,
     return (react_1.default.createElement("polygon", { points: points.toString(), fill: (0, material_1.alpha)(polygonColor, 0.3), stroke: (0, material_1.alpha)(polygonColor, 0.8) }));
 });
 exports.Polygon = Polygon;
-// rounded rect from https://stackoverflow.com/a/45889603/2129219
-// prettier-ignore
-function rightRoundedRect(x, y, width, height, radius) {
-    return "M" + x + "," + y
-        + "h" + (width - radius)
-        + "a" + radius + "," + radius + " 0 0 1 " + radius + "," + radius
-        + "v" + (height - 2 * radius)
-        + "a" + radius + "," + radius + " 0 0 1 " + -radius + "," + radius
-        + "h" + (radius - width)
-        + "z";
-}
-// prettier-ignore
-function leftRoundedRect(x, y, width, height, radius) {
-    return "M" + (x + radius) + "," + y
-        + "h" + (width - radius)
-        + "v" + height
-        + "h" + (radius - width)
-        + "a" + radius + "," + radius + " 0 0 1 " + (-radius) + "," + (-radius)
-        + "v" + (2 * radius - height)
-        + "a" + radius + "," + radius + " 0 0 1 " + radius + "," + (-radius)
-        + "z";
-}
-const colorMap = {
-    gneg: 'rgb(227,227,227)',
-    gpos25: 'rgb(142,142,142)',
-    gpos50: 'rgb(85,85,85)',
-    gpos100: 'rgb(0,0,0)',
-    gpos75: 'rgb(57,57,57)',
-    gvar: 'rgb(0,0,0)',
-    stalk: 'rgb(127,127,127)',
-    acen: '#800',
-};
-function getCytobands(assembly, refName) {
-    var _a;
-    return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
-        refName: assembly.getCanonicalRefName(f.get('refName')),
-        start: f.get('start'),
-        end: f.get('end'),
-        type: f.get('type'),
-    })).filter(f => f.refName === refName)) || []);
-}
-const Cytobands = (0, mobx_react_1.observer)(({ overview, block, assembly, }) => {
-    const { offsetPx, reversed } = block;
-    const cytobands = getCytobands(assembly, block.refName);
-    const coords = cytobands.map(f => {
-        const { refName, start, end, type } = f;
-        return [
-            overview.bpToPx({
-                refName,
-                coord: start,
-            }),
-            overview.bpToPx({
-                refName,
-                coord: end,
-            }),
-            type,
-        ];
-    });
-    const arr = cytobands || [];
-    const lcap = reversed ? arr.length - 1 : 0;
-    const rcap = reversed ? 0 : arr.length - 1;
-    let firstCent = true;
-    return (react_1.default.createElement("g", { transform: `translate(-${offsetPx})` }, coords.map(([start, end, type], index) => {
-        const key = `${start}-${end}-${type}`;
-        if (type === 'acen' && firstCent) {
-            firstCent = false;
-            return (react_1.default.createElement("polygon", { key: key, points: [
-                    [start, 0],
-                    [end, __1.HEADER_OVERVIEW_HEIGHT / 2],
-                    [start, __1.HEADER_OVERVIEW_HEIGHT],
-                ].toString(), fill: colorMap[type] }));
-        }
-        if (type === 'acen' && !firstCent) {
-            return (react_1.default.createElement("polygon", { key: key, points: [
-                    [start, __1.HEADER_OVERVIEW_HEIGHT / 2],
-                    [end, 0],
-                    [end, __1.HEADER_OVERVIEW_HEIGHT],
-                ].toString(), fill: colorMap[type] }));
-        }
-        if (lcap === index) {
-            return (react_1.default.createElement("path", { key: key, d: leftRoundedRect(Math.min(start, end), 0, Math.abs(end - start), __1.HEADER_OVERVIEW_HEIGHT, 8), fill: colorMap[type] }));
-        }
-        else if (rcap === index) {
-            return (react_1.default.createElement("path", { key: key, d: rightRoundedRect(Math.min(start, end), 0, Math.abs(end - start) - 2, __1.HEADER_OVERVIEW_HEIGHT, 8), fill: colorMap[type] }));
-        }
-        else {
-            return (react_1.default.createElement("rect", { key: key, x: Math.min(start, end), y: 0, width: Math.abs(end - start), height: __1.HEADER_OVERVIEW_HEIGHT, fill: colorMap[type] }));
-        }
-    })));
-});
-exports.Cytobands = Cytobands;
-const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview, }) => {
+const OverviewBox = (0, mobx_react_1.observer)(function ({ scale, model, block, overview, }) {
     const { classes, cx } = useStyles();
+    const theme = (0, material_1.useTheme)();
     const { cytobandOffset, showCytobands } = model;
     const { start, end, reversed, refName, assemblyName } = block;
     const { majorPitch } = (0, util_2.chooseGridPitch)(scale, 120, 15);
@@ -206,11 +120,13 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
         const offsetLabel = (i + 1) * majorPitch;
         tickLabels.push(reversed ? end - offsetLabel : start + offsetLabel);
     }
-    const canDisplayCytobands = showCytobands && getCytobands(assembly, block.refName).length;
+    const canDisplayCytobands = showCytobands && (0, util_3.getCytobands)(assembly, block.refName).length;
     return (react_1.default.createElement("div", null,
         react_1.default.createElement(material_1.Typography, { style: {
                 left: block.offsetPx + 3,
-                color: canDisplayCytobands ? 'black' : refNameColor,
+                color: canDisplayCytobands
+                    ? theme.palette.primary.contrastText
+                    : refNameColor,
             }, className: classes.scalebarRefName }, refName),
         react_1.default.createElement("div", { className: cx(classes.scalebarContig, canDisplayCytobands
                 ? undefined
@@ -229,9 +145,9 @@ const OverviewBox = (0, mobx_react_1.observer)(({ scale, model, block, overview,
                     } }, (0, util_1.getTickDisplayStr)(tickLabel, overview.bpPerPx))))
                 : null,
             canDisplayCytobands ? (react_1.default.createElement("svg", { style: { width: '100%' } },
-                react_1.default.createElement(Cytobands, { overview: overview, assembly: assembly, block: block }))) : null)));
+                react_1.default.createElement(Cytobands_1.default, { overview: overview, assembly: assembly, block: block }))) : null)));
 });
-const Scalebar = (0, mobx_react_1.observer)(({ model, scale, overview, }) => {
+const Scalebar = (0, mobx_react_1.observer)(function ({ model, scale, overview, }) {
     const { classes } = useStyles();
     const theme = (0, material_1.useTheme)();
     const { dynamicBlocks, showCytobands, cytobandOffset } = model;

package/dist/LinearGenomeView/components/OverviewScalebar.js.map

@@ -1 +1 @@
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+{"version":3,"file":"OverviewScalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/OverviewScalebar.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAA2D;AAC3D,uCAA0C;AAC1C,2CAAqC;AAErC,OAAO;AACP,yFAAgF;AAChF,6CAAkE;AAClE,8DAA4D;AAE5D,SAAS;AACT,0BAIW;AACX,kCAAyC;AACzC,8EAAqD;AACrD,4DAAmC;AAqU1B,oBArUF,mBAAS,CAqUE;AApUlB,iCAAqC;AAErC,MAAM,cAAc,GAAG,CAAC,CAAA;AAExB,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,MAAM,EAAE,0BAAsB;KAC/B;IACD,cAAc,EAAE;QACd,MAAM,EAAE,WAAW;KACpB;IACD,cAAc,EAAE;QACd,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;QACjD,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,0BAAsB;QAC9B,QAAQ,EAAE,QAAQ;KACnB;IACD,qBAAqB,EAAE;QACrB,eAAe,EAAE,6IAA6I,KAAK,CAAC,OAAO,CAAC,OAAO,mBAAmB;QACtM,gBAAgB,EAAE,QAAQ;KAC3B;IACD,qBAAqB,EAAE;QACrB,eAAe,EAAE,yIAAyI,KAAK,CAAC,OAAO,CAAC,OAAO,mBAAmB;QAClM,gBAAgB,EAAE,QAAQ;KAC3B;IAED,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,GAAG;KACZ;IACD,aAAa,EAAE;QACb,MAAM,EAAE,0BAAsB;QAC9B,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,0BAAsB;QAC9B,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,GAAG;QACX,MAAM,EAAE,WAAW;KACpB;IACD,QAAQ,EAAE;QACR,MAAM,EAAE,qBAAiB;QACzB,QAAQ,EAAE,UAAU;KACrB;IACD,WAAW,EAAE;QACX,KAAK,EAAE,MAAM;QACb,QAAQ,EAAE,UAAU;KACrB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,OAAO,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACjC,KAAK,EACL,QAAQ,EACR,SAAS,GAAG,IAAI,GAKjB;IACC,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,UAAU,GAAG,MAAM,CAAC,SAAS,CAAC,CAAA;IACpC,MAAM,EAAE,uBAAuB,EAAE,QAAQ,EAAE,aAAa,EAAE,cAAc,EAAE,GACxE,KAAK,CAAA;IACP,MAAM,EAAE,aAAa,EAAE,0BAA0B,EAAE,GAAG,aAAa,CAAA;IAEnE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAA;IAE9D,IAAI,CAAC,aAAa,CAAC,MAAM,EAAE;QACzB,OAAO,IAAI,CAAA;KACZ;IACD,MAAM,KAAK,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IAC9B,MAAM,IAAI,GAAG,aAAa,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACpD,MAAM,OAAO,GACX,CAAC,QAAQ,CAAC,MAAM,CAAC;QACf,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAC;QACR,cAAc,GAAG,UAAU,CAAA;IAC7B,MAAM,QAAQ,GACZ,CAAC,QAAQ,CAAC,MAAM,CAAC;QACf,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAC;QACR,cAAc,GAAG,UAAU,CAAA;IAE7B,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAA;IACtC,MAAM,KAAK,GACT,OAAO;QACP,0BAA0B;QAC1B,CAAC,aAAa,CAAC,MAAM,GAAG,uBAAuB,CAAC,GAAG,CAAC,CAAA;IAEtD,MAAM,MAAM,GAAG;QACb,CAAC,OAAO,EAAE,qBAAiB,CAAC;QAC5B,CAAC,KAAK,EAAE,qBAAiB,CAAC;QAC1B,CAAC,QAAQ,EAAE,CAAC,CAAC;QACb,CAAC,OAAO,EAAE,CAAC,CAAC;KACb,CAAA;IAED,OAAO,CACL,2CACE,MAAM,EAAE,MAAM,CAAC,QAAQ,EAAE,EACzB,IAAI,EAAE,IAAA,gBAAK,EAAC,YAAY,EAAE,GAAG,CAAC,EAC9B,MAAM,EAAE,IAAA,gBAAK,EAAC,YAAY,EAAE,GAAG,CAAC,GAChC,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAmNkB,0BAAO;AA/M3B,MAAM,WAAW,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACrC,KAAK,EACL,KAAK,EACL,KAAK,EACL,QAAQ,GAMT;IACC,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/C,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAC7D,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,sBAAe,EAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CAAA;IACtD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,YAAY,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,eAAe,CAAC,OAAO,CAAC,CAAA;IAEvD,MAAM,UAAU,GAAG,EAAE,CAAA;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,GAAG,KAAK,CAAC,GAAG,UAAU,CAAC,EAAE,CAAC,EAAE,EAAE;QAC/D,MAAM,WAAW,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAA;QACxC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,WAAW,CAAC,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAA;KACpE;IAED,MAAM,mBAAmB,GACvB,aAAa,IAAI,IAAA,mBAAY,EAAC,QAAQ,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,MAAM,CAAA;IAE/D,OAAO,CACL;QAEE,8BAAC,qBAAU,IACT,KAAK,EAAE;gBACL,IAAI,EAAE,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACxB,KAAK,EAAE,mBAAmB;oBACxB,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,YAAY;oBACpC,CAAC,CAAC,YAAY;aACjB,EACD,SAAS,EAAE,OAAO,CAAC,eAAe,IAEjC,OAAO,CACG;QACb,uCACE,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,cAAc,EACtB,mBAAmB;gBACjB,CAAC,CAAC,SAAS;gBACX,CAAC,CAAC,QAAQ;oBACV,CAAC,CAAC,OAAO,CAAC,qBAAqB;oBAC/B,CAAC,CAAC,OAAO,CAAC,qBAAqB,EACjC,CAAC,mBAAmB,CAAC,CAAC,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,CAC1D,EACD,KAAK,EAAE;gBACL,IAAI,EAAE,KAAK,CAAC,QAAQ,GAAG,cAAc;gBACrC,KAAK,EAAE,KAAK,CAAC,OAAO;gBACpB,WAAW,EAAE,YAAY;aAC1B;YAEA,CAAC,mBAAmB;gBACnB,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,QAAQ,EAAE,EAAE,CAAC,CACtC,8BAAC,qBAAU,IACT,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,SAAS,IAAI,QAAQ,EAAE,EACxD,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,OAAO,EAAC,OAAO,EACf,KAAK,EAAE;wBACL,IAAI,EAAE,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,KAAK;wBAC3C,aAAa,EAAE,MAAM;wBACrB,KAAK,EAAE,YAAY;qBACpB,IAEA,IAAA,wBAAiB,EAAC,SAAS,EAAE,QAAQ,CAAC,OAAO,CAAC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package/dist/LinearGenomeView/components/RubberbandSpan.js

@@ -30,8 +30,8 @@ const util_1 = require("@jbrowse/core/util");
 const useStyles = (0, mui_1.makeStyles)()(theme => {
     const { primary, tertiary } = theme.palette;
     const background = tertiary
-        ? (0, material_1.alpha)(tertiary.main, 0.7)
-        : (0, material_1.alpha)(primary.main, 0.7);
+        ? (0, material_1.alpha)(tertiary.light, 0.7)
+        : (0, material_1.alpha)(primary.light, 0.7);
     return {
         rubberband: {
             height: '100%',

package/dist/LinearGenomeView/components/RubberbandSpan.js.map

@@ -1 +1 @@
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+{"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAqC;AACrC,uCAA0C;AAE1C,4CAA0D;AAC1D,6CAAwD;AAExD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,IAAA,gBAAK,EAAC,QAAQ,CAAC,KAAK,EAAE,GAAG,CAAC;QAC5B,CAAC,CAAC,IAAA,gBAAK,EAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;IAC7B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,SAAS,cAAc,CAAC,EACtB,YAAY,EACZ,aAAa,EACb,eAAe,EACf,IAAI,EACJ,KAAK,GAON;IACC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CACb;YACE,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,MAAM;iBACnB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,OAAO;iBACpB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,YAAY,CAAC,CAAc,CAC1C;YACV,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE;oBACP,KAAK,EAAE,OAAO,CAAC,KAAK;iBACrB,EACD,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,OAAO;iBACpB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,MAAM;iBACnB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,aAAa,CAAC,CAAc,CAC3C,CACT,CACJ,CAAC,CAAC,CAAC,IAAI;QACR,uCAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IACjE,eAAe,CAAC,CAAC,CAAC,CACjB,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,EAAC,SAAS,EAAE,OAAO,CAAC,cAAc;YACvD,IAAA,eAAQ,EAAC,eAAe,CAAC;kBACf,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACL,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,cAAc,CAAA"}

package/dist/LinearGenomeView/components/TrackLabel.js

@@ -8,9 +8,10 @@ const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
-const CascadingMenu_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenu"));
 const util_1 = require("@jbrowse/core/util");
 const tracks_1 = require("@jbrowse/core/util/tracks");
+const ui_1 = require("@jbrowse/core/ui");
+const CascadingMenu_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenu"));
 const hooks_1 = require("material-ui-popup-state/hooks");
 // icons
 const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
@@ -36,7 +37,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     },
     dragHandle: {
         cursor: 'grab',
-        color: '#135560',
     },
     dragHandleIcon: {
         display: 'inline-block',
@@ -79,10 +79,11 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
                 }
             }, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
             react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
-        react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
+        react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track" },
             react_1.default.createElement(Close_1.default, { fontSize: "small" })),
-        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
-        react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
+        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName },
+            react_1.default.createElement(ui_1.SanitizedHTML, { html: trackName + (minimized ? ' (minimized)' : '') })),
+        react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, "data-testid": "track_menu_icon", disabled: !items.length },
             react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
         react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
 });

package/dist/LinearGenomeView/components/TrackLabel.js.map

@@ -1 +1 @@
-{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAoE;AACpE,uCAA0C;AAC1C,2CAAqC;AACrC,+DAAqD;AACrD,mFAA0D;AAC1D,6CAAkE;AAClE,sDAAwD;AAGxD,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AACjD,4EAAuD;AACvD,kEAA6C;AAI7C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,IAAA,qBAAY,EAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,aAAO,CAAC,CAAC,CAAC,kBAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CACnC;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}
+{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAoE;AACpE,uCAA0C;AAC1C,2CAAqC;AACrC,+DAAqD;AACrD,6CAAkE;AAClE,sDAAwD;AAExD,yCAAgD;AAChD,mFAA0D;AAE1D,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AACjD,4EAAuD;AACvD,kEAA6C;AAI7C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;KACf;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,IAAA,qBAAY,EAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,aAAO,CAAC,CAAC,CAAC,kBAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB;YAExB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS;YAE5B,8BAAC,kBAAa,IAAC,IAAI,EAAE,SAAS,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,GAAI,CAC3D;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,iBACjB,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}

package/dist/LinearGenomeView/components/ZoomControls.js

@@ -32,7 +32,7 @@ const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
 const ZoomOut_1 = __importDefault(require("@mui/icons-material/ZoomOut"));
-const useStyles = (0, mui_1.makeStyles)()({
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
     container: {
         display: 'flex',
         flexDirection: 'row',
@@ -40,8 +40,9 @@ const useStyles = (0, mui_1.makeStyles)()({
     },
     slider: {
         width: 70,
+        color: theme.palette.text.secondary,
     },
-});
+}));
 function ZoomControls({ model }) {
     const { classes } = useStyles();
     const { maxBpPerPx, minBpPerPx, bpPerPx, scaleFactor } = model;
@@ -50,10 +51,10 @@ function ZoomControls({ model }) {
         setValue(-Math.log2(bpPerPx) * 100);
     }, [setValue, bpPerPx]);
     return (react_1.default.createElement("div", { className: classes.container },
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, size: "large" },
             react_1.default.createElement(ZoomOut_1.default, null)),
         react_1.default.createElement(material_1.Slider, { size: "small", className: classes.slider, value: value, min: -Math.log2(maxBpPerPx) * 100, max: -Math.log2(minBpPerPx) * 100, onChange: (_, val) => setValue(val), onChangeCommitted: () => model.zoomTo(2 ** (-value / 100)), disabled: scaleFactor !== 1 }),
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary", size: "large" },
+        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, size: "large" },
             react_1.default.createElement(ZoomIn_1.default, null))));
 }
 exports.default = (0, mobx_react_1.observer)(ZoomControls);

package/dist/LinearGenomeView/components/ZoomControls.js.map

@@ -1 +1 @@
-{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ZoomControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,2CAAqC;AACrC,4CAAkD;AAClD,uCAA0C;AAC1C,wEAA+C;AAC/C,0EAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,UAAU,EAAE,QAAQ;KACrB;IACD,MAAM,EAAE;QACN,KAAK,EAAE,EAAE;KACV;CACF,CAAC,CAAA;AAEF,SAAS,YAAY,CAAC,EAAE,KAAK,EAAoC;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IAC7D,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IACrC,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAA;IAEvB,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,8BAAC,iBAAO,OAAG,CACA;QAEb,8BAAC,iBAAM,IACL,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAa,CAAC,EAC7C,iBAAiB,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,EAC1D,QAAQ,EAAE,WAAW,KAAK,CAAC,GAC3B;QACF,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,8BAAC,gBAAM,OAAG,CACC,CACT,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,YAAY,CAAC,CAAA"}
+{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ZoomControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,2CAAqC;AACrC,4CAAkD;AAClD,uCAA0C;AAC1C,wEAA+C;AAC/C,0EAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,UAAU,EAAE,QAAQ;KACrB;IACD,MAAM,EAAE;QACN,KAAK,EAAE,EAAE;QACT,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACpC;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,YAAY,CAAC,EAAE,KAAK,EAAoC;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IAC7D,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IACrC,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAA;IAEvB,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,IAAI,EAAC,OAAO;YAEZ,8BAAC,iBAAO,OAAG,CACA;QAEb,8BAAC,iBAAM,IACL,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAa,CAAC,EAC7C,iBAAiB,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,EAC1D,QAAQ,EAAE,WAAW,KAAK,CAAC,GAC3B;QACF,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,IAAI,EAAC,OAAO;YAEZ,8BAAC,gBAAM,OAAG,CACC,CACT,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,YAAY,CAAC,CAAA"}

package/dist/LinearGenomeView/components/util.d.ts

@@ -16,3 +16,9 @@ export declare function getRelativeX<T extends {
     clientX: number;
     target: EventTarget | null;
 }>(event: T, element: HTMLElement | null): number;
+export declare function getCytobands(assembly: Assembly | undefined, refName: string): {
+    refName: string;
+    start: number;
+    end: number;
+    type: any;
+}[];

package/dist/LinearGenomeView/components/util.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getRelativeX = exports.splitLast = exports.fetchResults = void 0;
+exports.getCytobands = exports.getRelativeX = exports.splitLast = exports.fetchResults = void 0;
 const util_1 = require("@jbrowse/core/util");
 const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
 async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
@@ -36,4 +36,14 @@ function getRelativeX(event, element) {
     return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
 }
 exports.getRelativeX = getRelativeX;
+function getCytobands(assembly, refName) {
+    var _a;
+    return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
+        refName: assembly.getCanonicalRefName(f.get('refName')),
+        start: f.get('start'),
+        end: f.get('end'),
+        type: f.get('type'),
+    })).filter(f => f.refName === refName)) || []);
+}
+exports.getCytobands = getCytobands;
 //# sourceMappingURL=util.js.map

package/dist/LinearGenomeView/components/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":";;;;;;AAGA,6CAA8D;AAC9D,uFAA6D;AAEtD,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,IAAA,aAAM,EACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AArCD,oCAqCC;AAED,6CAA6C;AAC7C,SAAgB,SAAS,CAAC,GAAW,EAAE,KAAa;IAClD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;IACxC,IAAI,SAAS,KAAK,CAAC,CAAC,EAAE;QACpB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;KACjB;SAAM;QACL,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;QACtC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACtC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;KACvB;AACH,CAAC;AATD,8BASC;AAED,SAAgB,YAAY,CAE1B,KAAQ,EAAE,OAA2B;IACrC,OAAO,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,qBAAqB,GAAG,IAAI,KAAI,CAAC,CAAC,CAAA;AACrE,CAAC;AAJD,oCAIC;AAED,SAAgB,YAAY,CAAC,QAA8B,EAAE,OAAe;;IAC1E,OAAO,CACL,CAAA,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,SAAS,0CACf,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACV,OAAO,EAAE,QAAQ,CAAC,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QACvD,KAAK,EAAE,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC;QACrB,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC;QACjB,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC;KACpB,CAAC,EACD,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,OAAO,CAAC,KAAI,EAAE,CAC5C,CAAA;AACH,CAAC;AAXD,oCAWC"}

package/dist/LinearGenomeView/model.d.ts

@@ -5,7 +5,7 @@ import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
 import { BlockSet, BaseBlock } from '@jbrowse/core/util/blockTypes';
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { renderToSvg } from './components/LinearGenomeViewSvg';
+import { renderToSvg } from './svgcomponents/SVGLinearGenomeView';
 import RefNameAutocomplete from './components/RefNameAutocomplete';
 import SearchBox from './components/SearchBox';
 import ZoomControls from './components/ZoomControls';
@@ -25,6 +25,14 @@ export interface ExportSvgOptions {
     rasterizeLayers?: boolean;
     filename?: string;
     Wrapper?: React.FC<any>;
+    fontSize?: number;
+    rulerHeight?: number;
+    textHeight?: number;
+    paddingHeight?: number;
+    headerHeight?: number;
+    cytobandHeight?: number;
+    trackLabels?: string;
+    themeName?: string;
 }
 export interface NavLocation {
     refName: string;
@@ -366,7 +374,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
      */
     clearView(): void;
     /**
-     * #action
+     * #method
      * creates an svg export and save using FileSaver
      */
     exportSvg(opts?: ExportSvgOptions): Promise<void>;