@jbrowse/plugin-linear-genome-view 2.3.3 → 2.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/Block.js +1 -1
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +74 -4
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +41 -22
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/configSchema.js +8 -0
- package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +5 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/LinearBareDisplay/model.d.ts +62 -4
- package/dist/LinearBasicDisplay/model.d.ts +72 -14
- package/dist/LinearGenomeView/components/CenterLine.js +2 -2
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/dist/LinearGenomeView/components/Cytobands.js +92 -0
- package/dist/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +24 -3
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +4 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js +1 -1
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +3 -4
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +5 -4
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +1 -115
- package/dist/LinearGenomeView/components/OverviewScalebar.js +15 -99
- package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.js +2 -2
- package/dist/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +6 -5
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +5 -4
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +6 -0
- package/dist/LinearGenomeView/components/util.js +11 -1
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/model.d.ts +10 -2
- package/dist/LinearGenomeView/model.js +6 -6
- package/dist/LinearGenomeView/model.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +55 -0
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +56 -0
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +13 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +51 -0
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +22 -0
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +15 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +30 -0
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/dist/LinearGenomeView/util.js +1 -1
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.d.ts +133 -18
- package/dist/index.js +6 -2
- package/dist/index.js.map +1 -1
- package/esm/BaseLinearDisplay/components/Block.js +1 -1
- package/esm/BaseLinearDisplay/components/Block.js.map +1 -1
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +74 -4
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +42 -23
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/esm/BaseLinearDisplay/models/configSchema.js +8 -0
- package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +5 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/esm/LinearBareDisplay/model.d.ts +62 -4
- package/esm/LinearBasicDisplay/model.d.ts +72 -14
- package/esm/LinearGenomeView/components/CenterLine.js +2 -2
- package/esm/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/esm/LinearGenomeView/components/Cytobands.d.ts +118 -0
- package/esm/LinearGenomeView/components/Cytobands.js +87 -0
- package/esm/LinearGenomeView/components/Cytobands.js.map +1 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +25 -4
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.js +4 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js +1 -1
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/esm/LinearGenomeView/components/Header.js +5 -6
- package/esm/LinearGenomeView/components/Header.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +1 -1
- package/esm/LinearGenomeView/components/MiniControls.js +5 -4
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +1 -115
- package/esm/LinearGenomeView/components/OverviewScalebar.js +12 -96
- package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.js +2 -2
- package/esm/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +6 -5
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/ZoomControls.js +5 -4
- package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +6 -0
- package/esm/LinearGenomeView/components/util.js +9 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/model.d.ts +10 -2
- package/esm/LinearGenomeView/model.js +4 -4
- package/esm/LinearGenomeView/model.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +49 -0
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +13 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +47 -0
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +7 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +45 -0
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +16 -0
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +9 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +24 -0
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
- package/esm/LinearGenomeView/util.js +1 -1
- package/esm/LinearGenomeView/util.js.map +1 -1
- package/esm/index.d.ts +133 -18
- package/esm/index.js +3 -2
- package/esm/index.js.map +1 -1
- package/package.json +3 -3
- package/src/BaseLinearDisplay/components/Block.tsx +1 -1
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +11 -12
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +53 -35
- package/src/BaseLinearDisplay/models/configSchema.ts +8 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +9 -17
- package/src/LinearGenomeView/components/CenterLine.tsx +2 -2
- package/src/LinearGenomeView/components/Cytobands.tsx +154 -0
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +56 -4
- package/src/LinearGenomeView/components/GetSequenceDialog.tsx +5 -1
- package/src/LinearGenomeView/components/Gridlines.tsx +1 -1
- package/src/LinearGenomeView/components/Header.tsx +6 -13
- package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +8 -11
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +1 -1
- package/src/LinearGenomeView/components/MiniControls.tsx +6 -7
- package/src/LinearGenomeView/components/OverviewScalebar.tsx +218 -381
- package/src/LinearGenomeView/components/RubberbandSpan.tsx +2 -2
- package/src/LinearGenomeView/components/TrackLabel.tsx +3 -5
- package/src/LinearGenomeView/components/ZoomControls.tsx +3 -4
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +1240 -1203
- package/src/LinearGenomeView/components/util.ts +13 -0
- package/src/LinearGenomeView/index.test.ts +9 -5
- package/src/LinearGenomeView/model.ts +16 -5
- package/src/LinearGenomeView/svgcomponents/SVGBackground.tsx +21 -0
- package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +93 -0
- package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +114 -0
- package/src/LinearGenomeView/svgcomponents/SVGRegionSeparators.tsx +31 -0
- package/src/LinearGenomeView/svgcomponents/SVGRuler.tsx +125 -0
- package/src/LinearGenomeView/svgcomponents/SVGScalebar.tsx +57 -0
- package/src/LinearGenomeView/svgcomponents/SVGTrackLabel.tsx +45 -0
- package/src/LinearGenomeView/svgcomponents/SVGTracks.tsx +67 -0
- package/src/LinearGenomeView/util.test.ts +7 -4
- package/src/LinearGenomeView/util.ts +2 -2
- package/src/index.ts +10 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -141
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/dist/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/dist/LinearGenomeView/components/Ruler.js +0 -39
- package/dist/LinearGenomeView/components/Ruler.js.map +0 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -134
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
- package/esm/LinearGenomeView/components/Ruler.d.ts +0 -11
- package/esm/LinearGenomeView/components/Ruler.js +0 -34
- package/esm/LinearGenomeView/components/Ruler.js.map +0 -1
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +0 -307
- package/src/LinearGenomeView/components/Ruler.tsx +0 -78
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import { makeStyles } from 'tss-react/mui'
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import { observer } from 'mobx-react'
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import CascadingMenu from '@jbrowse/core/ui/CascadingMenu'
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import { getSession, getContainingView } from '@jbrowse/core/util'
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import { getTrackName } from '@jbrowse/core/util/tracks'
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import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models'
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import CascadingMenu from '@jbrowse/core/ui/CascadingMenu'
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import {
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bindTrigger,
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dragHandle: {
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title="close this track"
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{trackName + (minimized ? ' (minimized)' : '')}
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<SanitizedHTML html={trackName + (minimized ? ' (minimized)' : '')} />
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</Typography>
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<IconButton
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{...bindTrigger(popupState)}
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className={classes.iconButton}
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import { LinearGenomeViewModel } from '..'
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const useStyles = makeStyles()({
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const useStyles = makeStyles()(theme => ({
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