@jbrowse/plugin-linear-genome-view 2.3.3 → 2.4.0

package/dist/BaseLinearDisplay/components/Block.js

@@ -23,7 +23,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     },
     interRegionPaddingBlock: {
         minHeight: '100%',
-        backgroundColor: theme.palette.text.primary,
+        backgroundColor: theme.palette.text.disabled,
     },
     boundaryPaddingBlock: {
         minHeight: '100%',

package/dist/BaseLinearDisplay/components/Block.js.map

@@ -1 +1 @@
-{"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AAEzB,uCAA0C;AAC1C,2CAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;KAC5C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACtC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAgCO,oCAAY;AA9BrB,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,uCAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AA2BsB,kCAAW;AAzBlC,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,uCACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAEmC,0DAAuB"}
+{"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AAEzB,uCAA0C;AAC1C,2CAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ;KAC7C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACtC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAgCO,oCAAY;AA9BrB,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,uCAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AA2BsB,kCAAW;AAzBlC,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,uCACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAEmC,0DAAuB"}

package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js

@@ -35,17 +35,17 @@ const ui_1 = require("@jbrowse/core/ui");
 const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
 // locals
 const BlockMsg_1 = __importDefault(require("./BlockMsg"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    loading: {
-        paddingLeft: '0.6em',
-        backgroundColor: theme.palette.action.disabledBackground,
-        backgroundImage: 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
-        height: '100%',
-        width: '100%',
-        pointerEvents: 'none',
-        textAlign: 'center',
-    },
-}));
+const useStyles = (0, mui_1.makeStyles)()(theme => {
+    const bg = theme.palette.action.disabledBackground;
+    return {
+        loading: {
+            paddingLeft: '0.6em',
+            backgroundColor: theme.palette.background.default,
+            backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
+            textAlign: 'center',
+        },
+    };
+});
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = (0, mobx_react_1.observer)(({ model }) => {
     // only show the loading message after 300ms to prevent excessive flickering

package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map

@@ -1 +1 @@
-{"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,uCAA0C;AAC1C,2CAAqC;AACrC,qDAA2C;AAC3C,yCAAkD;AAElD,QAAQ;AACR,0EAAqD;AAErD,SAAS;AACT,0DAAiC;AAEjC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,WAAW,EAAE,OAAO;QACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACxD,eAAe,EACb,qHAAqH;QACvH,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,aAAa,EAAE,MAAM;QACrB,SAAS,EAAE,QAAQ;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,8DAA8D;AAC9D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,IAAA,2BAAS,EAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,8DACG,KAAK,CAAC,CAAC,CAAC,CACP,uCAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,8BAAC,oBAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,8BAAC,kBAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,8BAAC,iBAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,eAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,8BAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CAAC,CAAA;AAEF,kBAAe,8BAA8B,CAAA"}
+{"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,uCAA0C;AAC1C,2CAAqC;AACrC,qDAA2C;AAC3C,yCAAkD;AAElD,QAAQ;AACR,0EAAqD;AAErD,SAAS;AACT,0DAAiC;AAEjC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB,CAAA;IAClD,OAAO;QACL,OAAO,EAAE;YACP,WAAW,EAAE,OAAO;YACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;YACjD,eAAe,EAAE,kEAAkE,EAAE,SAAS,EAAE,QAAQ;YACxG,SAAS,EAAE,QAAQ;SACpB;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,8DAA8D;AAC9D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,IAAA,2BAAS,EAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,8DACG,KAAK,CAAC,CAAC,CAAC,CACP,uCAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,8BAAC,oBAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,8BAAC,kBAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,8BAAC,iBAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,eAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,8BAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CAAC,CAAA;AAEF,kBAAe,8BAA8B,CAAA"}

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -7,6 +7,7 @@ import { Region } from '@jbrowse/core/util/types';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
 import { Instance } from 'mobx-state-tree';
 import { ExportSvgOptions } from '../../LinearGenomeView';
+import { ThemeOptions } from '@mui/material';
 export interface Layout {
     minX: number;
     minY: number;
@@ -23,7 +24,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #property
      */
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     /**
      * #property
      * updated via autorun
@@ -145,6 +146,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     estimatedRegionStatsP: Promise<Stats> | undefined;
     estimatedRegionStats: Stats | undefined;
 } & {
+    readonly height: any;
     /**
      * #getter
      */
@@ -248,7 +250,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     /**
      * #action
      */
-    setHeight(displayHeight: number): number;
+    setHeight(displayHeight: number): any;
     /**
      * #action
      */
@@ -352,12 +354,80 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      */
     renderSvg(opts: ExportSvgOptions & {
         overrideHeight: number;
+        theme: ThemeOptions;
     }): Promise<JSX.Element>;
-}, import("mobx-state-tree")._NotCustomized, {
+}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    /**
+     * #property
+     */
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    /**
+     * #property
+     * updated via autorun
+     */
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    /**
+     * #property
+     */
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    /**
+     * #property
+     */
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>>, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 }>;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -60,7 +60,6 @@ function getDisplayStr(totalBytes) {
     return displayBp;
 }
 const minDisplayHeight = 20;
-const defaultDisplayHeight = 100;
 /**
  * #stateModel BaseLinearDisplay
  * extends `BaseDisplay`
@@ -71,7 +70,7 @@ function stateModelFactory() {
         /**
          * #property
          */
-        height: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.refinement('displayHeight', mobx_state_tree_1.types.number, n => n >= minDisplayHeight), defaultDisplayHeight),
+        heightPreConfig: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.refinement('displayHeight', mobx_state_tree_1.types.number, n => n >= minDisplayHeight)),
         /**
          * #property
          * updated via autorun
@@ -96,6 +95,10 @@ function stateModelFactory() {
         estimatedRegionStats: undefined,
     }))
         .views(self => ({
+        get height() {
+            var _a;
+            return (_a = self.heightPreConfig) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'height');
+        },
         /**
          * #getter
          */
@@ -328,10 +331,10 @@ function stateModelFactory() {
          */
         setHeight(displayHeight) {
             if (displayHeight > minDisplayHeight) {
-                self.height = displayHeight;
+                self.heightPreConfig = displayHeight;
             }
             else {
-                self.height = minDisplayHeight;
+                self.heightPreConfig = minDisplayHeight;
             }
             return self.height;
         },
@@ -637,7 +640,7 @@ function stateModelFactory() {
             const { overrideHeight } = opts;
             const view = (0, util_1.getContainingView)(self);
             const { offsetPx: viewOffsetPx, roundedDynamicBlocks, width } = view;
-            const renderings = await Promise.all(roundedDynamicBlocks.map(block => {
+            const renderings = await Promise.all(roundedDynamicBlocks.map(async (block) => {
                 const blockState = serverSideRenderedBlock_1.default.create({
                     key: block.key,
                     region: block,
@@ -647,35 +650,51 @@ function stateModelFactory() {
                 const cannotBeRenderedReason = self.regionCannotBeRenderedText(block) ||
                     self.regionCannotBeRendered(block);
                 if (cannotBeRenderedReason) {
-                    return {
-                        reactElement: (react_1.default.createElement(react_1.default.Fragment, null,
-                            react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: 20, fill: "#aaa" }),
-                            react_1.default.createElement("text", { x: 0, y: 15 }, cannotBeRenderedReason))),
-                    };
+                    return [
+                        block,
+                        {
+                            reactElement: (react_1.default.createElement(react_1.default.Fragment, null,
+                                react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: 20, fill: "#aaa" }),
+                                react_1.default.createElement("text", { x: 0, y: 15 }, cannotBeRenderedReason))),
+                        },
+                    ];
                 }
                 const { rpcManager, renderArgs, renderProps, rendererType } = (0, serverSideRenderedBlock_1.renderBlockData)(blockState, self);
-                return rendererType.renderInClient(rpcManager, {
-                    ...renderArgs,
-                    ...renderProps,
-                    viewParams: (0, util_1.getViewParams)(self, true),
-                    exportSVG: opts,
-                });
+                return [
+                    block,
+                    await rendererType.renderInClient(rpcManager, {
+                        ...renderArgs,
+                        ...renderProps,
+                        viewParams: (0, util_1.getViewParams)(self, true),
+                        exportSVG: opts,
+                        theme: opts.theme || renderProps.theme,
+                    }),
+                ];
             }));
-            return (react_1.default.createElement(react_1.default.Fragment, null, renderings.map((rendering, index) => {
-                const { offsetPx } = roundedDynamicBlocks[index];
+            return (react_1.default.createElement(react_1.default.Fragment, null, renderings.map(([block, rendering], index) => {
+                const { offsetPx, widthPx } = block;
                 const offset = offsetPx - viewOffsetPx;
                 const clipid = getId(id, index);
                 return (react_1.default.createElement(react_1.default.Fragment, { key: `frag-${index}` },
                     react_1.default.createElement("defs", null,
                         react_1.default.createElement("clipPath", { id: clipid },
-                            react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: overrideHeight || height }))),
+                            react_1.default.createElement("rect", { x: 0, y: 0, width: widthPx, height: overrideHeight || height }))),
                     react_1.default.createElement("g", { transform: `translate(${offset} 0)` },
-                        react_1.default.createElement("g", { clipPath: `url(#${clipid})` }, react_1.default.isValidElement(rendering.reactElement) ? (rendering.reactElement) : (react_1.default.createElement("g", { 
-                            /* eslint-disable-next-line react/no-danger */
-                            dangerouslySetInnerHTML: { __html: rendering.html } }))))));
+                        react_1.default.createElement("g", { clipPath: `url(#${clipid})` },
+                            react_1.default.createElement(util_1.ReactRendering, { rendering: rendering })))));
             })));
         },
     }))
+        .preProcessSnapshot(snap => {
+        if (!snap) {
+            return snap;
+        }
+        // rewrite "height" from older snapshots to "heightPreConfig", this allows
+        // us to maintain a height "getter" going forward
+        // @ts-ignore
+        const { height, ...rest } = snap;
+        return { heightPreConfig: height, ...rest };
+    })
         .postProcessSnapshot(self => {
         // xref https://github.com/mobxjs/mobx-state-tree/issues/1524 for Omit
         const r = self;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

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package/dist/BaseLinearDisplay/models/configSchema.js

@@ -25,6 +25,14 @@ const baseLinearDisplayConfigSchema = (0, configuration_1.ConfigurationSchema)('
         defaultValue: 1000000,
         description: "maximum data to attempt to download for a given track, used if adapter doesn't specify one",
     },
+    /**
+     * #slot
+     */
+    height: {
+        type: 'number',
+        defaultValue: 100,
+        description: 'default height for the track',
+    },
 }, {
     /**
      * #identifier

package/dist/BaseLinearDisplay/models/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,IAAA,mCAAmB,EACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,kBAAe,6BAA6B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,IAAA,mCAAmB,EACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,GAAG;QACjB,WAAW,EAAE,8BAA8B;KAC5C;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,kBAAe,6BAA6B,CAAA"}

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts

@@ -44,7 +44,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
         maxHeightReached: boolean;
         renderProps: any;
     } | undefined): void;
-    setError(error: Error | unknown): void;
+    setError(error: unknown): void;
     reload(): void;
     beforeDestroy(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js

@@ -10,6 +10,7 @@ const util_1 = require("@jbrowse/core/util");
 const mst_1 = require("@jbrowse/core/util/types/mst");
 const types_1 = require("@jbrowse/core/util/types");
 const tracks_1 = require("@jbrowse/core/util/tracks");
+// locals
 const ServerSideRenderedBlockContent_1 = __importDefault(require("../components/ServerSideRenderedBlockContent"));
 // the MST state of a single server-side-rendered block in a display
 const blockState = mobx_state_tree_1.types
@@ -201,6 +202,9 @@ function renderBlockData(self, optDisplay) {
 }
 exports.renderBlockData = renderBlockData;
 async function renderBlockEffect(props, signal, self) {
+    if (!props) {
+        return;
+    }
     const { rendererType, renderProps, rpcManager, renderArgs, cannotBeRenderedReason, displayError, } = props;
     if (!(0, mobx_state_tree_1.isAlive)(self)) {
         return undefined;
@@ -227,6 +231,7 @@ async function renderBlockEffect(props, signal, self) {
         features,
         layout,
         maxHeightReached,
+        renderProps,
     };
 }
 //# sourceMappingURL=serverSideRenderedBlock.js.map

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":";;;;;;AAEA,qDAOwB;AACxB,+DAA4D;AAC5D,6CAQ2B;AAC3B,sDAAqD;AACrD,oDAGiC;AAEjC,sDAGkC;AAElC,SAAS;AACT,kHAAyF;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,uBAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB,MAAM,EAAE,YAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,wCAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,IAAA,4BAAqB,EACnB,IAAW,EACX,eAAe,EACf,iBAAiB,EAAE,qCAAqC;YACxD;gBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,IAAA,wBAAiB,EAAC,IAAI,CAAC,MAAM,CAAC,YAAY;gBACjE,KAAK,EAAE,OAAO,CAAC,WAAW;gBAC1B,eAAe,EAAE,IAAI;aACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;QACH,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IAAI,gBAAgB,KAAK,SAAS,EAAE;gBAClC,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;oBACpC,gBAAgB,CAAC,KAAK,EAAE,CAAA;iBACzB;aACF;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAc;YACrB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,IAAA,wBAAgB,EAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,wCAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,IAAA,2BAAS,EAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAA,sBAAI,EAAC,IAAI,CAAC,CAAC,CAAA;YAClD,iEAAiE;YACjE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,kBAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,SAAgB,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,IAAA,2BAAoB,EAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,OAAO,CAAC,CAAA;QAC3D,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACnE,MAAM,aAAa,GAAG,IAAA,8BAAqB,EAAC,WAAW,CAAC,CAAA;QACxD,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC1C,IACE,CAAC,aAAa,CAAC,QAAQ,CAAC,SAAS,CAAC;YAClC,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,WAAC,OAAA,MAAA,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,0CAAE,OAAO,CAAC,SAAS,CAAC,CAAA,EAAA,CAAC,EAC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package/dist/LinearBareDisplay/model.d.ts

@@ -9,7 +9,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
@@ -128,6 +128,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
+    readonly height: any;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -157,7 +158,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): number;
+    setHeight(displayHeight: number): any;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -190,6 +191,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
 } & {
     /**
@@ -200,11 +202,67 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
      * #getter
      */
     readonly rendererTypeName: any;
-}, import("mobx-state-tree")._NotCustomized, {
+}, {
+    type: string;
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+            features: Map<string, import("@jbrowse/core/util").Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;